Sed0011700 (gene) Chayote v1

Overview
NameSed0011700
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationLG05: 530459 .. 531228 (+)
RNA-Seq ExpressionSed0011700
SyntenySed0011700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTACAAACTTCACCTACTTGTGAGGATCAAAAAACAAGAGTTTGTTTGTTTGATAATCTTTTTTTGGGGCATTTAAGGTAATGGGGATCTCCAAAAGAGGTTGTTTGGTGTTGTTTGTGTTGATGTTTATTGTGTTGGCTAATCCTATGGAAGCAGCCAGGGTTATGAAAGGAGAGGATTGGATGAAGGACAAGGAAGATATGCCTTTTGTGTTGCCTATTCAAGTTTTGCAGCGTGCCCCGGTTCCACCCTCCGGTCCCAACCCGTGCGGTAACATTCCTGGCCAAAGCAACGGCCGATGCACCCTCCAGACGATGAACATTGCAGGTGGTCGTTTTGTCCATGCGCCGCCACCTCTCGTTGCCTTGGCTGCTCAAAGCTCTTGATGGTTCATAAGGGTGGAACCGTGGAGGCTGTGGTCAGTTTCATGAGGGACCTCTCATTTTATTGAACCTGTTATTTAATTATCTTTTTCTTTTGCTTGGGAGCATCGTCCAAAAAAGAATTGGTTGCAACCCATGTAATTTATGTTCAAGTAAAAGTTTTTTTCCTTTTTAAATTGTTATTATTATTTTCATAGATTGTGTTACTTGATAAAAGATTAGTTTATTCTTTGACAATTTCAAATATGATAAGCTTTACAAAAAGAGCATTTGGAATTATTGTCCGAGTTTAAGACCAACTTATACATATACTATATTTTAAATAAGTTGGTGAAGATTACGGTTTGAATTTCAAACTTGAGAAGTAATTTTAATGTTTTAATT

mRNA sequence

ATTTTACAAACTTCACCTACTTGTGAGGATCAAAAAACAAGAGTTTGTTTGTTTGATAATCTTTTTTTGGGGCATTTAAGGTAATGGGGATCTCCAAAAGAGGTTGTTTGGTGTTGTTTGTGTTGATGTTTATTGTGTTGGCTAATCCTATGGAAGCAGCCAGGGTTATGAAAGGAGAGGATTGGATGAAGGACAAGGAAGATATGCCTTTTGTGTTGCCTATTCAAGTTTTGCAGCGTGCCCCGGTTCCACCCTCCGGTCCCAACCCGTGCGGTAACATTCCTGGCCAAAGCAACGGCCGATGCACCCTCCAGACGATGAACATTGCAGGTGGTCGTTTTGTCCATGCGCCGCCACCTCTCGTTGCCTTGGCTGCTCAAAGCTCTTGATGGTTCATAAGGGTGGAACCGTGGAGGCTGTGGTCAGTTTCATGAGGGACCTCTCATTTTATTGAACCTGTTATTTAATTATCTTTTTCTTTTGCTTGGGAGCATCGTCCAAAAAAGAATTGGTTGCAACCCATGTAATTTATGTTCAAGTAAAAGTTTTTTTCCTTTTTAAATTGTTATTATTATTTTCATAGATTGTGTTACTTGATAAAAGATTAGTTTATTCTTTGACAATTTCAAATATGATAAGCTTTACAAAAAGAGCATTTGGAATTATTGTCCGAGTTTAAGACCAACTTATACATATACTATATTTTAAATAAGTTGGTGAAGATTACGGTTTGAATTTCAAACTTGAGAAGTAATTTTAATGTTTTAATT

Coding sequence (CDS)

ATGGGGATCTCCAAAAGAGGTTGTTTGGTGTTGTTTGTGTTGATGTTTATTGTGTTGGCTAATCCTATGGAAGCAGCCAGGGTTATGAAAGGAGAGGATTGGATGAAGGACAAGGAAGATATGCCTTTTGTGTTGCCTATTCAAGTTTTGCAGCGTGCCCCGGTTCCACCCTCCGGTCCCAACCCGTGCGGTAACATTCCTGGCCAAAGCAACGGCCGATGCACCCTCCAGACGATGAACATTGCAGGTGGTCGTTTTGTCCATGCGCCGCCACCTCTCGTTGCCTTGGCTGCTCAAAGCTCTTGA

Protein sequence

MGISKRGCLVLFVLMFIVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSGPNPCGNIPGQSNGRCTLQTMNIAGGRFVHAPPPLVALAAQSS
Homology
BLAST of Sed0011700 vs. NCBI nr
Match: XP_022995941.1 (uncharacterized protein LOC111491306 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 2.8e-32
Identity = 80/109 (73.39%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MGISKRGCLVLFVLMF-IVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSG 60
           MG+SKR  LV FVL+F I+L NPMEAARVM GE WMK K+DM FVLPIQVLQRAPVPPSG
Sbjct: 1   MGMSKRVSLVFFVLLFTILLPNPMEAARVMSGEKWMKAKQDMAFVLPIQVLQRAPVPPSG 60

Query: 61  PNPCGNIPGQSNGRCTLQTMNIAG--GRFVHAPPPL-----VALAAQSS 102
            NPC  IPGQSNGRCTLQTMN+AG  GRFV APP +     +A AAQSS
Sbjct: 61  RNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Sed0011700 vs. NCBI nr
Match: XP_022931191.1 (uncharacterized protein LOC111437447 [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 6.8e-31
Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0

Query: 1   MGISKRGCLVLFVLMF-IVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSG 60
           MG+SKR  LV FVLM  I+L NPMEAARVM G  WMK K+D+ FVLPIQVLQRAPVPPSG
Sbjct: 1   MGMSKRVSLVFFVLMLTILLPNPMEAARVMSGHKWMKAKQDIAFVLPIQVLQRAPVPPSG 60

Query: 61  PNPCGNIPGQSNGRCTLQTMNIAG--GRFVHAPPPL-----VALAAQSS 102
            NPC  IPGQSNGRCTLQTMN+AG  GRFV APP +     +A AAQSS
Sbjct: 61  RNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Sed0011700 vs. NCBI nr
Match: KAG6606390.1 (hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 68/92 (73.91%), Postives = 74/92 (80.43%), Query Frame = 0

Query: 17  IVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSGPNPCGNIPGQSNGRCTL 76
           I+L NPMEAARVM GE WMK K+D+ FVLPIQVLQRAPVPPSG NPC  IPGQSNGRCTL
Sbjct: 4   ILLPNPMEAARVMSGEKWMKAKQDIAFVLPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTL 63

Query: 77  QTMNIAGG--RFVHAPPPL-----VALAAQSS 102
           QTMN+AGG  RFV APP +     +A AAQSS
Sbjct: 64  QTMNVAGGPARFVQAPPAIHDPAPIASAAQSS 95

BLAST of Sed0011700 vs. NCBI nr
Match: TXG63783.1 (hypothetical protein EZV62_010777 [Acer yangbiense])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 0

Query: 9  LVLFVLMFIVLANP----MEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSGPNPCG 68
          +VL + M +++A+     + A R ++G+ W  +KED    L  Q LQ+ P+PPSG NPC 
Sbjct: 13 VVLIIFMTLLMASHDQHFVAATRPLEGDQW-TNKEDNR--LAFQSLQQGPLPPSGRNPCS 72

Query: 69 NIPGQSNGRCTLQTMNIAGGRFVHAPP 92
          NIPGQ +G CTL   N AGGR    PP
Sbjct: 73 NIPGQGSGVCTLNGKNFAGGRVALEPP 96

BLAST of Sed0011700 vs. NCBI nr
Match: KAG6738307.1 (hypothetical protein POTOM_057918 [Populus tomentosa])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 1   MGISKRG-CLVLFVLMFIVL---ANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVP 60
           MG  +R  CL + + + IV    ++ + AAR ++GE W+  K+D+     IQ L+RAPVP
Sbjct: 100 MGSQRRNQCLTMTIFVAIVFGACSHQILAARPLEGEQWL--KQDLG---NIQSLRRAPVP 159

Query: 61  PSGPNPCGNIPGQSNGRCTLQTMNIAGGRFVHAPP 92
           PSG +PC + PG+ +G C L  MN AG    HAPP
Sbjct: 160 PSGGSPCTHTPGRGSGPCPLGEMNFAGHNVAHAPP 189

BLAST of Sed0011700 vs. ExPASy TrEMBL
Match: A0A6J1K3A7 (uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 80/109 (73.39%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MGISKRGCLVLFVLMF-IVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSG 60
           MG+SKR  LV FVL+F I+L NPMEAARVM GE WMK K+DM FVLPIQVLQRAPVPPSG
Sbjct: 1   MGMSKRVSLVFFVLLFTILLPNPMEAARVMSGEKWMKAKQDMAFVLPIQVLQRAPVPPSG 60

Query: 61  PNPCGNIPGQSNGRCTLQTMNIAG--GRFVHAPPPL-----VALAAQSS 102
            NPC  IPGQSNGRCTLQTMN+AG  GRFV APP +     +A AAQSS
Sbjct: 61  RNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Sed0011700 vs. ExPASy TrEMBL
Match: A0A6J1ET04 (uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC111437447 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.3e-31
Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0

Query: 1   MGISKRGCLVLFVLMF-IVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSG 60
           MG+SKR  LV FVLM  I+L NPMEAARVM G  WMK K+D+ FVLPIQVLQRAPVPPSG
Sbjct: 1   MGMSKRVSLVFFVLMLTILLPNPMEAARVMSGHKWMKAKQDIAFVLPIQVLQRAPVPPSG 60

Query: 61  PNPCGNIPGQSNGRCTLQTMNIAG--GRFVHAPPPL-----VALAAQSS 102
            NPC  IPGQSNGRCTLQTMN+AG  GRFV APP +     +A AAQSS
Sbjct: 61  RNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Sed0011700 vs. ExPASy TrEMBL
Match: A0A0A0LCX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.1e-22
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 1  MGISKRGCLVLFVLMFIVLANPMEAARVMKGEDWMKDKED--MPFVLP-IQVLQRAPVPP 60
          MGIS++  L+ F+++ +  +  M  ARVMK E WMK++++    FVLP IQVLQRAPVPP
Sbjct: 1  MGISQKNVLLFFIIL-VASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPP 60

Query: 61 SGPNPCGNIPGQSNGRCTLQTMNIAGGRFVHAPPP 93
          SG NPC  IPGQSNGRCTLQTMN+AG  FVHA PP
Sbjct: 61 SGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPP 94

BLAST of Sed0011700 vs. ExPASy TrEMBL
Match: A0A2N9F903 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.3e-10
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 9   LVLFVLMFIVLANPMEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSGPNPCGNIPG 68
           +++F+++F++  +   A R + GE W+         L +Q LQR PV PSGPNPC  IPG
Sbjct: 1   MLIFIMLFVLGFHEALAMRPLDGEPWLNKN------LAMQTLQRGPVTPSGPNPCTYIPG 60

Query: 69  QSNGRCTLQTMNIAGGRFVHAPPP----LVALAAQS 101
           +S+GRCTL  M++A     HAPP     +V+ AA S
Sbjct: 61  RSHGRCTLSEMDVA-DHVAHAPPAFPDHVVSFAAAS 89

BLAST of Sed0011700 vs. ExPASy TrEMBL
Match: A0A5C7I2P2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010777 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-09
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 0

Query: 9  LVLFVLMFIVLANP----MEAARVMKGEDWMKDKEDMPFVLPIQVLQRAPVPPSGPNPCG 68
          +VL + M +++A+     + A R ++G+ W  +KED    L  Q LQ+ P+PPSG NPC 
Sbjct: 13 VVLIIFMTLLMASHDQHFVAATRPLEGDQW-TNKEDNR--LAFQSLQQGPLPPSGRNPCS 72

Query: 69 NIPGQSNGRCTLQTMNIAGGRFVHAPP 92
          NIPGQ +G CTL   N AGGR    PP
Sbjct: 73 NIPGQGSGVCTLNGKNFAGGRVALEPP 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022995941.12.8e-3273.39uncharacterized protein LOC111491306 [Cucurbita maxima][more]
XP_022931191.16.8e-3171.56uncharacterized protein LOC111437447 [Cucurbita moschata][more]
KAG6606390.11.6e-2773.91hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sorori... [more]
TXG63783.11.2e-0844.83hypothetical protein EZV62_010777 [Acer yangbiense][more]
KAG6738307.11.2e-0843.16hypothetical protein POTOM_057918 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K3A71.3e-3273.39uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306... [more]
A0A6J1ET043.3e-3171.56uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC1114374... [more]
A0A0A0LCX88.1e-2262.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1[more]
A0A2N9F9039.3e-1041.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1[more]
A0A5C7I2P26.0e-0944.83Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010777 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..101
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 2..92
NoneNo IPR availablePANTHERPTHR33592:SF5TRANSMEMBRANE PROTEINcoord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011700.1Sed0011700.1mRNA