Sed0011663 (gene) Chayote v1

Overview


Name	Sed0011663
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B
Location	LG07: 15719286 .. 15720600 (-)
RNA-Seq Expression	Sed0011663
Synteny	Sed0011663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGGTAAAGAAACATATATATGTTCCTTATAATAACAAGATTCCACCTCTTGGAAGACCATTCTTTGCCATTATTCTAATCACCAATAATTTATTTCATTTATTTTTTCCTCTGTCAAAATCAAACCGTGTTTCCTCTTGATTCAATTTCTCCCCACAACCCCTTTAAAATCCCCACCTCAAACCCCACCCTCCACCACCAAAATCCCCCCCTCCTCCGCCTTTAAATTCCGGCCAAACCCCATCGCCATGAGCGGTAGCAACCGAAACTCCGCCGCCGGAAACATCAGCCCCGTCGGCAGCCCAGAGAGCTCAACGACGAAAGAACAAGACCGGTTCCTCCCGATCGCCAACGTGAGCCGAATCATGAAGAAATCCCTTCCGGCGAACGCGAAGATCTCGAAAGAGGCGAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGGAAAACGATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCCCCCCTTTGAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGACAAGCATTCTTTCGCCAGAAACGACGATCCGCCACCGCCGCCGCCCAAATCCGCCGATTCCGTGCTGGATTTTCAGAATTTGAATTCTGGGTTTTATTCATTTGGGAATCATATTCATGATCAGGCAAATCATAAGAGTTTTCATGTAATCGATGGCGTTGGATTTGGGGAAACTGAAGGGAATCGAGCTCGATCTATGGCGGCTCATCTTCAACAGAGCACTGGTTGGTGATTTGCATATATATATGGTGGAGTGTTTCTGACTGCAATTCAGGGGGGTTTGGTTGAATTTCTTAGCCAAATTTAGATTAAATTAAGGGGATCGAATTTATCATATTCTAATAAATAAATATATTGGAATTTATGGTAGGATTTTATTTTCAGAAAATGGTAGAATTTTATGAGCTAAGTATGGTTTTAGGGATTGTTGAGAGAGATTTTTTTTTTAAAATGTTTTATTTTTGGGGGTTATAAAAGTGATGGGATGTGGGATTTGAATCTAGAATGAGTTCTTTATTTTGTTGGGTTATTAAAGTTAAGAGTGGTATTTGTCATAATATATTATGCTATTGGACCTTTATTCTAATCACATTTAATTTCTTGGTCTCGAGGTACATAGTTTAGTTGGTTTTTGTATTTAGTCTTTTTGTTATGAATTTGGGAATAATATTGTAGTTTGACCGCTTTTTCTTTGTTAGAAAATATTCT

mRNA sequence

AAAAAGGTAAAGAAACATATATATGTTCCTTATAATAACAAGATTCCACCTCTTGGAAGACCATTCTTTGCCATTATTCTAATCACCAATAATTTATTTCATTTATTTTTTCCTCTGTCAAAATCAAACCGTGTTTCCTCTTGATTCAATTTCTCCCCACAACCCCTTTAAAATCCCCACCTCAAACCCCACCCTCCACCACCAAAATCCCCCCCTCCTCCGCCTTTAAATTCCGGCCAAACCCCATCGCCATGAGCGGTAGCAACCGAAACTCCGCCGCCGGAAACATCAGCCCCGTCGGCAGCCCAGAGAGCTCAACGACGAAAGAACAAGACCGGTTCCTCCCGATCGCCAACGTGAGCCGAATCATGAAGAAATCCCTTCCGGCGAACGCGAAGATCTCGAAAGAGGCGAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGGAAAACGATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCCCCCCTTTGAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGACAAGCATTCTTTCGCCAGAAACGACGATCCGCCACCGCCGCCGCCCAAATCCGCCGATTCCGTGCTGGATTTTCAGAATTTGAATTCTGGGTTTTATTCATTTGGGAATCATATTCATGATCAGGCAAATCATAAGAGTTTTCATGTAATCGATGGCGTTGGATTTGGGGAAACTGAAGGGAATCGAGCTCGATCTATGGCGGCTCATCTTCAACAGAGCACTGGTTGGTGATTTGCATATATATATGGTGGAGTGTTTCTGACTGCAATTCAGGGGGGTTTGGTTGAATTTCTTAGCCAAATTTAGATTAAATTAAGGGGATCGAATTTATCATATTCTAATAAATAAATATATTGGAATTTATGGTAGGATTTTATTTTCAGAAAATGGTAGAATTTTATGAGCTAAGTATGGTTTTAGGGATTGTTGAGAGAGATTTTTTTTTTAAAATGTTTTATTTTTGGGGGTTATAAAAGTGATGGGATGTGGGATTTGAATCTAGAATGAGTTCTTTATTTTGTTGGGTTATTAAAGTTAAGAGTGGTATTTGTCATAATATATTATGCTATTGGACCTTTATTCTAATCACATTTAATTTCTTGGTCTCGAGGTACATAGTTTAGTTGGTTTTTGTATTTAGTCTTTTTGTTATGAATTTGGGAATAATATTGTAGTTTGACCGCTTTTTCTTTGTTAGAAAATATTCT

Coding sequence (CDS)

ATGAGCGGTAGCAACCGAAACTCCGCCGCCGGAAACATCAGCCCCGTCGGCAGCCCAGAGAGCTCAACGACGAAAGAACAAGACCGGTTCCTCCCGATCGCCAACGTGAGCCGAATCATGAAGAAATCCCTTCCGGCGAACGCGAAGATCTCGAAAGAGGCGAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGGAAAACGATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCCCCCCTTTGAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGACAAGCATTCTTTCGCCAGAAACGACGATCCGCCACCGCCGCCGCCCAAATCCGCCGATTCCGTGCTGGATTTTCAGAATTTGAATTCTGGGTTTTATTCATTTGGGAATCATATTCATGATCAGGCAAATCATAAGAGTTTTCATGTAATCGATGGCGTTGGATTTGGGGAAACTGAAGGGAATCGAGCTCGATCTATGGCGGCTCATCTTCAACAGAGCACTGGTTGGTGA

Protein sequence

MSGSNRNSAAGNISPVGSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDKHSFARNDDPPPPPPKSADSVLDFQNLNSGFYSFGNHIHDQANHKSFHVIDGVGFGETEGNRARSMAAHLQQSTGW

Homology

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BLAST of Sed0011663 vs. NCBI nr
Match: XP_022136742.1 (nuclear transcription factor Y subunit B-1-like [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 6.4e-78
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 0


Query: 1   MSGSNRNSAAGNISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 60
           MSG  RNS A  +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISKEAK
Sbjct: 1   MSGHKRNSTAAAVSPVGSPTSGDISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 60

Query: 61  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRE 120
           ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKYRE
Sbjct: 61  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVAPLKIYLNKYRE 120

Query: 121 TEEDKHSFARNDDPPPPP--------PKSADSVLDFQNLNSGFYSFGNHIHDQANHKSFH 180
           TEE+KHSFAR DD  PPP         KSA SV+DFQN NSGFYS GN   +Q   KSF+
Sbjct: 121 TEEEKHSFARQDDQAPPPGSAEQIIGGKSASSVMDFQNFNSGFYSLGN--QNQTAQKSFN 180

Query: 181 VIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           +IDGVGFGE              EGNR R+MAAHLQQS+GW
Sbjct: 181 IIDGVGFGENFRGFNVSGVHENGEGNRGRAMAAHLQQSSGW 219

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BLAST of Sed0011663 vs. NCBI nr
Match: XP_004149164.1 (nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nuclear transcription factor Y subunit B-like [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 1.4e-77
Identity = 164/225 (72.89%), Postives = 175/225 (77.78%), Query Frame = 0


Query: 1   MSGSNRNSAAGN--ISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG  RN  A    +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQANH 180
           RETEE+KHS AR +DP   PP          KSA+SV+DFQN NSGFYS GN I +Q N 
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 181 KSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           KSF++IDGVGFGE              EGNRAR+MAAHLQQS+GW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Sed0011663 vs. NCBI nr
Match: XP_038898148.1 (nuclear transcription factor Y subunit B-like [Benincasa hispida])

HSP 1 Score: 297.4 bits (760), Expect = 9.3e-77
Identity = 163/226 (72.12%), Postives = 176/226 (77.88%), Query Frame = 0


Query: 1   MSGSNRN---SAAGNISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISK 60
           MSG  RN   +AA  +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISK
Sbjct: 1   MSGHKRNFTTTAAAAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK 60

Query: 61  EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNK 120
           EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLK+YLNK
Sbjct: 61  EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKMYLNK 120

Query: 121 YRETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQAN 180
           YRETEE+KHS AR DDP   P           KSA+SV+DFQN NSGFYS GN   +Q N
Sbjct: 121 YRETEEEKHSLARQDDPSLSPAKSAAEQIISGKSANSVMDFQNFNSGFYSLGNQNQNQGN 180

Query: 181 HKSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
            KSF++IDGVGFGE+             EGNRAR+MAAHLQQS+GW
Sbjct: 181 QKSFNIIDGVGFGESLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226

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BLAST of Sed0011663 vs. NCBI nr
Match: KAE8637572.1 (hypothetical protein CSA_017849 [Cucumis sativus] >KAE8649163.1 hypothetical protein Csa_014945 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 3.5e-76
Identity = 163/224 (72.77%), Postives = 174/224 (77.68%), Query Frame = 0


Query: 1   MSGSNRNSAAGN--ISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG  RN  A    +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQANH 180
           RETEE+KHS AR +DP   PP          KSA+SV+DFQN NSGFYS GN I +Q N 
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 181 KSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTG 195
           KSF++IDGVGFGE              EGNRAR+MAAHLQQS+G
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSG 224

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BLAST of Sed0011663 vs. NCBI nr
Match: XP_008453748.1 (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA0044740.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa] >TYK16723.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 160/225 (71.11%), Postives = 173/225 (76.89%), Query Frame = 0


Query: 1   MSGSNRN--SAAGNISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG  RN  +    +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQANH 180
           RETEE+KHS AR +DP   P           KSA+SV+DFQN NSGFYS GN I  Q + 
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 181 KSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           KSF++IDGVGFGE              EGNRAR+MAAHLQQS+GW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

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BLAST of Sed0011663 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-45
Identity = 105/189 (55.56%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 1   MSGSNRNSAAG-NISPVGSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQ 60
           M  S+R+S  G N +      S + +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEED 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E +
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KHSFARNDDPPPPPPKSADSVLDFQNLNSGFYSFGN----HIHDQANHKSFHVIDGVGFG 180
           +    R            D+V D      GFY  G     H H Q  H+  H+    G G
Sbjct: 121 RTGLGRPQTGGEVGEHQRDAVGD----GGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGG 180

Query: 181 ETEGNRARS 185
              G  A S
Sbjct: 181 SDSGGGAAS 185

[Close]

BLAST of Sed0011663 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-44
Identity = 88/104 (84.62%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 21  SSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 80
           +++T+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 81  KRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDKHSFA 125
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E +K + A
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTA 119

[Close]

BLAST of Sed0011663 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 17  GSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDK 76
           G    S  KEQDRFLPIANVSRIMK+SLPANAKISKE+KETVQECVSEFISF+TGEASDK
Sbjct: 49  GGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDK 108

Query: 77  CQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDK 121
           CQREKRKTINGDDLLWAMTTLGFE YV PLK YLN+YRE E +K
Sbjct: 109 CQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEK 152

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BLAST of Sed0011663 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-43
Identity = 85/106 (80.19%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 15  PVGSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEAS 74
           P  + E ++ +EQDRFLPIANVSRIMK++LPANAKISK+AKETVQECVSEFISFITGEAS
Sbjct: 11  PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEAS 70

Query: 75  DKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDK 121
           DKCQREKRKTINGDDLLWAMTTLGFE+Y+ PLK+YL+K+RE E +K
Sbjct: 71  DKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Sed0011663 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.1e-43
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 10  AGNISPVGSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFI 69
           +G  S     E S+ +EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFI
Sbjct: 8   SGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFI 67

Query: 70  TGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDK 121
           TGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV PLK YL+K+RE E ++
Sbjct: 68  TGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER 118

[Close]

BLAST of Sed0011663 vs. ExPASy TrEMBL
Match: A0A6J1C6A6 (nuclear transcription factor Y subunit B-1-like OS=Momordica charantia OX=3673 GN=LOC111008372 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.1e-78
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 0


Query: 1   MSGSNRNSAAGNISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 60
           MSG  RNS A  +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISKEAK
Sbjct: 1   MSGHKRNSTAAAVSPVGSPTSGDISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 60

Query: 61  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRE 120
           ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKYRE
Sbjct: 61  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVAPLKIYLNKYRE 120

Query: 121 TEEDKHSFARNDDPPPPP--------PKSADSVLDFQNLNSGFYSFGNHIHDQANHKSFH 180
           TEE+KHSFAR DD  PPP         KSA SV+DFQN NSGFYS GN   +Q   KSF+
Sbjct: 121 TEEEKHSFARQDDQAPPPGSAEQIIGGKSASSVMDFQNFNSGFYSLGN--QNQTAQKSFN 180

Query: 181 VIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           +IDGVGFGE              EGNR R+MAAHLQQS+GW
Sbjct: 181 IIDGVGFGENFRGFNVSGVHENGEGNRGRAMAAHLQQSSGW 219

[Close]

BLAST of Sed0011663 vs. ExPASy TrEMBL
Match: A0A0A0KXV6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G037610 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.9e-78
Identity = 164/225 (72.89%), Postives = 175/225 (77.78%), Query Frame = 0


Query: 1   MSGSNRNSAAGN--ISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG  RN  A    +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQANH 180
           RETEE+KHS AR +DP   PP          KSA+SV+DFQN NSGFYS GN I +Q N 
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 181 KSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           KSF++IDGVGFGE              EGNRAR+MAAHLQQS+GW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Sed0011663 vs. ExPASy TrEMBL
Match: A0A5D3CXU2 (Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005600 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.5e-76
Identity = 160/225 (71.11%), Postives = 173/225 (76.89%), Query Frame = 0


Query: 1   MSGSNRN--SAAGNISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG  RN  +    +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQANH 180
           RETEE+KHS AR +DP   P           KSA+SV+DFQN NSGFYS GN I  Q + 
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 181 KSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           KSF++IDGVGFGE              EGNRAR+MAAHLQQS+GW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Sed0011663 vs. ExPASy TrEMBL
Match: A0A1S3BY72 (nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC103494392 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.5e-76
Identity = 160/225 (71.11%), Postives = 173/225 (76.89%), Query Frame = 0


Query: 1   MSGSNRN--SAAGNISPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKE 60
           MSG  RN  +    +SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEDKHSFARNDDPPPPPP----------KSADSVLDFQNLNSGFYSFGNHIHDQANH 180
           RETEE+KHS AR +DP   P           KSA+SV+DFQN NSGFYS GN I  Q + 
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 181 KSFHVIDGVGFGET-------------EGNRARSMAAHLQQSTGW 196
           KSF++IDGVGFGE              EGNRAR+MAAHLQQS+GW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Sed0011663 vs. ExPASy TrEMBL
Match: A0A6J1IZK6 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481354 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.9e-74
Identity = 160/232 (68.97%), Postives = 169/232 (72.84%), Query Frame = 0


Query: 1   MSGSNRNSAAGNI-SPVGSPES-----STTKEQDRFLPIANVSRIMKKSLPANAKISKEA 60
           M+G  RN     I SPVGSP S     S+TKEQDRFLPIANVSRIMKKSLP NAKISKEA
Sbjct: 1   MNGHKRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEA 60

Query: 61  KETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYR 120
           KETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYR
Sbjct: 61  KETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYR 120

Query: 121 ETEEDKHSFARNDDPPPPPP---------------KSADSVLDFQNLNSGFYSFG----N 180
           ETEE+KHS AR DD  P P                KSA+SV+DFQNLNSGFYS G    N
Sbjct: 121 ETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHN 180

Query: 181 HIHDQANHKSFHVIDGVGFG------------ETEGNRARSMAAHLQQSTGW 196
           H H   N KS+H+IDGVGFG            E EGNR R+MAAHLQQS+GW
Sbjct: 181 HNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW 232

[Close]

BLAST of Sed0011663 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-46
Identity = 105/189 (55.56%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 1   MSGSNRNSAAG-NISPVGSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQ 60
           M  S+R+S  G N +      S + +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEED 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E +
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KHSFARNDDPPPPPPKSADSVLDFQNLNSGFYSFGN----HIHDQANHKSFHVIDGVGFG 180
           +    R            D+V D      GFY  G     H H Q  H+  H+    G G
Sbjct: 121 RTGLGRPQTGGEVGEHQRDAVGD----GGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGG 180

Query: 181 ETEGNRARS 185
              G  A S
Sbjct: 181 SDSGGGAAS 185

[Close]

BLAST of Sed0011663 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 181.0 bits (458), Expect = 9.0e-46
Identity = 88/104 (84.62%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 21  SSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 80
           +++T+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 81  KRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDKHSFA 125
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E +K + A
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTA 119

[Close]

BLAST of Sed0011663 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 171.8 bits (434), Expect = 5.5e-43
Identity = 85/110 (77.27%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 17  GSPESST------TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 76
           GSP S T       KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 77  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDK 121
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE +K
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]

BLAST of Sed0011663 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 18  SPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC 77
           SP S   +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVSEFISF+T EASDKC
Sbjct: 22  SPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKC 81

Query: 78  QREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDKHSFARNDDP 130
           QREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E D    A+  DP
Sbjct: 82  QREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDP 133

[Close]

BLAST of Sed0011663 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 18  SPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC 77
           SP S   +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVSEFISF+T EASDKC
Sbjct: 22  SPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKC 81

Query: 78  QREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDKHSFARNDDP 130
           QREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E D    A+  DP
Sbjct: 82  QREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDP 133

The following BLAST results are available for this feature:

BLAST of Sed0011663 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136742.1	6.4e-78	74.21	nuclear transcription factor Y subunit B-1-like [Momordica charantia]	[more]
XP_004149164.1	1.4e-77	72.89	nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nucle...	[more]
XP_038898148.1	9.3e-77	72.12	nuclear transcription factor Y subunit B-like [Benincasa hispida]	[more]
KAE8637572.1	3.5e-76	72.77	hypothetical protein CSA_017849 [Cucumis sativus] >KAE8649163.1 hypothetical pro...	[more]
XP_008453748.1	1.7e-75	71.11	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA00...	[more]

BLAST of Sed0011663 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ3	4.4e-45	55.56	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	1.3e-44	84.62	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q0J7P4	1.8e-43	84.62	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q69J40	2.4e-43	80.19	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q75IZ7	9.1e-43	79.28	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Sed0011663 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6A6	3.1e-78	74.21	nuclear transcription factor Y subunit B-1-like OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KXV6	6.9e-78	72.89	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0376...	[more]
A0A5D3CXU2	8.5e-76	71.11	Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BY72	8.5e-76	71.11	nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1IZK6	7.9e-74	68.97	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0011663 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47640.1	3.1e-46	55.56	nuclear factor Y, subunit B2	[more]
AT4G14540.1	9.0e-46	84.62	nuclear factor Y, subunit B3	[more]
AT2G13570.1	5.5e-43	77.27	nuclear factor Y, subunit B7	[more]
AT2G37060.1	1.2e-42	73.21	nuclear factor Y, subunit B8	[more]
AT2G37060.2	1.2e-42	73.21	nuclear factor Y, subunit B8	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 58..76 score: 50.24 coord: 96..114 score: 41.63 coord: 77..95 score: 38.52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..138
None	No IPR available	PANTHER	PTHR11064:SF98	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11	coord: 9..128
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 18..131 e-value: 4.3E-47 score: 161.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 27..129
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 30..94 e-value: 5.0E-27 score: 94.0
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 9..128
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 61..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011663.1	Sed0011663.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding