Sed0011660 (gene) Chayote v1

Overview
NameSed0011660
Typegene
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 1
LocationLG04: 34547367 .. 34548041 (+)
RNA-Seq ExpressionSed0011660
SyntenySed0011660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTAATATTGTTTAGATTGACGTGTACTCCAACAAGATGGGAGGTGAATGGAAGAGAGTGAGTTTGTTGTTATGTTTGTTGTGTTTTCATGTTCTTATGTCCACTGCCACTCAAGTGGAAGAGAGGCTGCTATTCTCTGACGAATCTGGTGGAAGTGGAGGTGGTTTTGGAGGAGGATTCGGTGGCGGCGGTGGCGGAAATGGCGGTGGTTCTGGAGGGGGACATGGGGTGGGAGGCGGAAGCGGAAGTGGTGGCGGTTTTGGAGGGGGACATGGGGCTGGAAGTGGCAGTGGCAGTGGCAGTGGAAGTGGAAGTGGCAATGGTTTTGGAGGGGGACATGGGGTTGGCGGCGGAAGCGGAAGTGGCGGCGGTTTTGGAGGGGGACATGGGGTTGGCAGTGGTAGCGGAGGAGGACGAGGGGTTGGAGGCAGTAACGGAAGAGGTGGAGGAGACGGGGTTGGCAGCGGAAGCGGAAATGGTGGCGGTTTTGGAGGGGGACGTGGAGTTGGCAGCGGAAGTGGTGGAGGATTTGGTAAAGGTGGAGGTGTTGGCGGCAGCTTTGGAAAAGGTGATGGTGGAGGTTTTGGTGGTGGTTCTGATGGTGGTCGTGGATTCGGAAGCGGTGGCGGAGGAGGTGGTGGAAGTGGCAGCGGCCAAATTGAACACCACTAA

mRNA sequence

CAAATTAATATTGTTTAGATTGACGTGTACTCCAACAAGATGGGAGGTGAATGGAAGAGAGTGAGTTTGTTGTTATGTTTGTTGTGTTTTCATGTTCTTATGTCCACTGCCACTCAAGTGGAAGAGAGGCTGCTATTCTCTGACGAATCTGGTGGAAGTGGAGGTGGTTTTGGAGGAGGATTCGGTGGCGGCGGTGGCGGAAATGGCGGTGGTTCTGGAGGGGGACATGGGGTGGGAGGCGGAAGCGGAAGTGGTGGCGGTTTTGGAGGGGGACATGGGGCTGGAAGTGGCAGTGGCAGTGGCAGTGGAAGTGGAAGTGGCAATGGTTTTGGAGGGGGACATGGGGTTGGCGGCGGAAGCGGAAGTGGCGGCGGTTTTGGAGGGGGACATGGGGTTGGCAGTGGTAGCGGAGGAGGACGAGGGGTTGGAGGCAGTAACGGAAGAGGTGGAGGAGACGGGGTTGGCAGCGGAAGCGGAAATGGTGGCGGTTTTGGAGGGGGACGTGGAGTTGGCAGCGGAAGTGGTGGAGGATTTGGTAAAGGTGGAGGTGTTGGCGGCAGCTTTGGAAAAGGTGATGGTGGAGGTTTTGGTGGTGGTTCTGATGGTGGTCGTGGATTCGGAAGCGGTGGCGGAGGAGGTGGTGGAAGTGGCAGCGGCCAAATTGAACACCACTAA

Coding sequence (CDS)

ATGGGAGGTGAATGGAAGAGAGTGAGTTTGTTGTTATGTTTGTTGTGTTTTCATGTTCTTATGTCCACTGCCACTCAAGTGGAAGAGAGGCTGCTATTCTCTGACGAATCTGGTGGAAGTGGAGGTGGTTTTGGAGGAGGATTCGGTGGCGGCGGTGGCGGAAATGGCGGTGGTTCTGGAGGGGGACATGGGGTGGGAGGCGGAAGCGGAAGTGGTGGCGGTTTTGGAGGGGGACATGGGGCTGGAAGTGGCAGTGGCAGTGGCAGTGGAAGTGGAAGTGGCAATGGTTTTGGAGGGGGACATGGGGTTGGCGGCGGAAGCGGAAGTGGCGGCGGTTTTGGAGGGGGACATGGGGTTGGCAGTGGTAGCGGAGGAGGACGAGGGGTTGGAGGCAGTAACGGAAGAGGTGGAGGAGACGGGGTTGGCAGCGGAAGCGGAAATGGTGGCGGTTTTGGAGGGGGACGTGGAGTTGGCAGCGGAAGTGGTGGAGGATTTGGTAAAGGTGGAGGTGTTGGCGGCAGCTTTGGAAAAGGTGATGGTGGAGGTTTTGGTGGTGGTTCTGATGGTGGTCGTGGATTCGGAAGCGGTGGCGGAGGAGGTGGTGGAAGTGGCAGCGGCCAAATTGAACACCACTAA

Protein sequence

MGGEWKRVSLLLCLLCFHVLMSTATQVEERLLFSDESGGSGGGFGGGFGGGGGGNGGGSGGGHGVGGGSGSGGGFGGGHGAGSGSGSGSGSGSGNGFGGGHGVGGGSGSGGGFGGGHGVGSGSGGGRGVGGSNGRGGGDGVGSGSGNGGGFGGGRGVGSGSGGGFGKGGGVGGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSGQIEHH
Homology
BLAST of Sed0011660 vs. NCBI nr
Match: XP_021752225.1 (glycine-rich cell wall structural protein-like [Chenopodium quinoa])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 129/224 (57.59%), Postives = 142/224 (63.39%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTAT--------QVEERLLFSDESGGSGGGFGGGFGGGG 60
           M G  KR+SLL  L+CFHV +S+ +          +E+ LF     G GGGFGGGFGGGG
Sbjct: 1   MKGGTKRLSLLF-LVCFHVFVSSVSGRSLEATKDEDEKFLF-----GKGGGFGGGFGGGG 60

Query: 61  GGNGGGSGGGHGVGGGSGSGGGFGGGHGAGSGSGSGSGSGSGNGFGGGHGVGGGSGSGGG 120
           GG GGG GGG G GGG G GGG G G GAG G G G G G G G GGG G+GGG G GGG
Sbjct: 61  GGGGGGGGGGGGFGGGGGYGGGGGFGGGAGGGGGLGGGGGGGLGGGGGGGLGGGHGVGGG 120

Query: 121 FGGGHGVGSGSGGGRGVGGSNGRGG--GDGVGSGSGNGGGFGGGRGVGSGSGGGFGKGGG 180
            GGGHGVG G GGG G+GG  G+GG  G G+G G G GGG GGG GVG G GGG+GKGGG
Sbjct: 121 IGGGHGVGGGIGGGHGIGGGIGKGGGIGGGIGKGGGLGGGVGGGHGVGGGVGGGYGKGGG 180

Query: 181 VGGSF--------GKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           +GG          G G GGG GGG  GG G G G GGG G G G
Sbjct: 181 LGGGHGLGGGVGGGYGKGGGLGGGVGGGHGVGGGVGGGYGKGGG 218

BLAST of Sed0011660 vs. NCBI nr
Match: XP_016902584.1 (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 138/240 (57.50%), Postives = 145/240 (60.42%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTATQ----VEERLLFSDESGGSGGGFGG--GFGGG-GG 60
           M   WKRV+ LL LLCFHVL+          EE+ LF  +SGG GGGFGG  GFGGG GG
Sbjct: 22  MASGWKRVA-LLSLLCFHVLVYNVVAKEDGKEEKFLFFGKSGGLGGGFGGGSGFGGGFGG 81

Query: 61  GNGGGSGGGHGVGGGSGSGGGFGGGHGAGS--GSGSGSGSGSGNGFGGGHGVGGGSGSGG 120
           G GGG GGG G GGG G GGG+GGGHG G   G G G G G G G GGG GVGGG G GG
Sbjct: 82  GGGGGGGGGGGGGGGFGGGGGYGGGHGIGGGFGKGGGVGGGIGGGAGGGGGVGGGIGKGG 141

Query: 121 GFGGGHGVGSGSGGGRG-------------------VGGSNGRGG------GDGVGSGSG 180
           G GGG G G G GGG G                   VGG  G+GG      G G G G G
Sbjct: 142 GLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKVGGGIGKGGGLGGGAGGGFGKGGG 201

Query: 181 NGGGFGGGRGVGSGSGGGFGKGGGVGGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
            GGG G G G G G+GGGFGKGGGVGG FGK  GGGFGGG  GG G G GGGGGGG G G
Sbjct: 202 LGGGIGKGGGFGGGAGGGFGKGGGVGGGFGK--GGGFGGGVGGGAGGGGGGGGGGGGGGG 258

BLAST of Sed0011660 vs. NCBI nr
Match: XP_010670979.1 (PREDICTED: glycine-rich cell wall structural protein [Beta vulgaris subsp. vulgaris] >KMT16572.1 hypothetical protein BVRB_3g048620 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 130/242 (53.72%), Postives = 144/242 (59.50%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTA----------TQVEERLLFSDESGGSGGGFGGGFGG 60
           M G  KR+SLL  LLCFH+ +++           +  +E+ LF     G GGGFGGGFGG
Sbjct: 1   MKGGTKRLSLLF-LLCFHIAITSVSARYAVTTEKSTEDEKFLF-----GKGGGFGGGFGG 60

Query: 61  GGGGNGGGSGGGHGVGGGSGSGGGFGGGHGAGSGSGSGSGSGSGNGFGGGHGVGGGSGSG 120
           GGGG GGG GGG G GGG+G GGGFGGG G G G G+G G G G G GGGHG+GG    G
Sbjct: 61  GGGGGGGGGGGG-GFGGGAGGGGGFGGGAGGGFGGGAGGGHGIGGGIGGGHGIGG----G 120

Query: 121 GGFGGGHGVGSGSGGGRGVGGSNGRGGGDGVGSGSGN------------------GGGFG 180
           GG GGGHG+G G GGG G+GG  G GGG GVG G G                   GGGFG
Sbjct: 121 GGLGGGHGIGGGIGGGHGIGGGGGLGGGHGVGGGIGGGHGVGGGIGGGHGVGGGVGGGFG 180

Query: 181 GGRGVGSGSGGGFGKGGGVGGSFGK--------GDGGGFGGGSDGGRGFGSGGGGGGGSG 207
           GG GVG G GGG GKGGG+GG  GK        G GGGFGGG   G G G G GGG G G
Sbjct: 181 GGHGVGGGIGGGIGKGGGIGGGIGKGGGIGGGIGKGGGFGGGIGKGGGLGGGVGGGYGKG 231

BLAST of Sed0011660 vs. NCBI nr
Match: KAA0050716.1 (hypothetical protein E6C27_scaffold560G00130 [Cucumis melo var. makuwa] >TYK01449.1 hypothetical protein E5676_scaffold772G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-05
Identity = 130/215 (60.47%), Postives = 140/215 (65.12%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTATQ----VEERLLFSDESGGSGGGFGG--GFGGG-GG 60
           M   WKRV+ LL LLCFHVL+          EE+ LF  +SGG GGGFGG  GFGGG GG
Sbjct: 1   MASGWKRVA-LLSLLCFHVLVYNVVAKEDGKEEKFLFFGKSGGLGGGFGGGSGFGGGFGG 60

Query: 61  GNGGGSGGGHGVGGGSGSGGGFGGGHGAGS--GSGSGSGSGSGNGFGGGHGVGGGSGSGG 120
           G GGG GGG G GGG G GGG+GGGHG G   G G G G G G G GGG GVGGG G GG
Sbjct: 61  GGGGGGGGGGGGGGGFGGGGGYGGGHGIGGGFGKGGGVGGGIGGGAGGGGGVGGGIGKGG 120

Query: 121 GFGGGHGVGSGSGGGRGVGGSNGRGGGDGVGSGSGNGGGFGGGRGVGSGSGGGFGKGGGV 180
           G GGG G G G GGG G G   G G G G+G G G GGG GG    G+G+GGGFGKGGG+
Sbjct: 121 GLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKGGGLGG----GAGAGGGFGKGGGL 180

Query: 181 GGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           GG  GK  GGG GGG+  G GFG GGG GGG G G
Sbjct: 181 GGGIGK--GGGLGGGAGAGGGFGKGGGLGGGIGKG 208

BLAST of Sed0011660 vs. NCBI nr
Match: XP_021721872.1 (glycine-rich cell wall structural protein-like [Chenopodium quinoa])

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-04
Identity = 131/225 (58.22%), Postives = 143/225 (63.56%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMS--------TATQVEERLLFSDESGGSGGGFGGGFGG-G 60
           M G  KR+SLL  L+CFHV +S        T    +E+ LFS + GG GGGFGGG GG G
Sbjct: 1   MKGGTKRLSLLF-LVCFHVFVSSVSARSLETTKNEDEKFLFS-KGGGFGGGFGGGGGGSG 60

Query: 61  GGGNGGGSGGGHGVGGGSGSGGGFGGGHGAGSGSGSGSGSGSGNGFGGGHGVGGGSGSGG 120
           GGG GGG GGG G GGG G GGGFGGG G G G G G G G G   GGG G+GGG G GG
Sbjct: 61  GGGGGGGGGGGFGGGGGYGGGGGFGGGVGGGGGLGGGGGGGLGG--GGGGGLGGGHGIGG 120

Query: 121 GFGGGHGVGSGSGGGRGVGGSNGRGG--GDGVGSGSGNGGGFGGGRGVGSGSGGGFGKGG 180
           G GGGHGVG G GGG G+GG  G+GG  G G+G G G GGG GGG GVG G GGG+GKGG
Sbjct: 121 GVGGGHGVGGGIGGGHGIGGGIGKGGGIGGGIGKGGGLGGGVGGGHGVGGGIGGGYGKGG 180

Query: 181 GVGGSF--------GKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           G+GG          G G GGG GGG  GG G G G GGG G G G
Sbjct: 181 GLGGGHGIGGGVGGGYGKGGGLGGGVGGGHGIGGGVGGGYGKGGG 221

BLAST of Sed0011660 vs. ExPASy Swiss-Prot
Match: P09789 (Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-04
Identity = 116/176 (65.91%), Postives = 126/176 (71.59%), Query Frame = 0

Query: 38  GGSGGGFGGGFGGGGG-GNGGGSGGGHGVGGGSGSGGGFGGGHGAGS----GSGSGSGSG 97
           GG+GGG GGG GGGGG G GGG+GGG G+GGG G+GGGFGGG G G+    G G G G G
Sbjct: 73  GGAGGGAGGGLGGGGGLGGGGGAGGGGGLGGGGGAGGGFGGGAGGGAGGGLGGGGGLGGG 132

Query: 98  SGNGFGGGHGVGGGSGSGGGFGGGHGVGSGSGGGRGVGGSN--GRGGGDGVGSGSGNGGG 157
            G G GGG GVGGG+GSGGGFG G GVG G+G G GVGG    G GGG GVG GSG+GGG
Sbjct: 133 GGGGAGGGGGVGGGAGSGGGFGAGGGVGGGAGAGGGVGGGGGFGGGGGGGVGGGSGHGGG 192

Query: 158 FGGGRGVGSGSGGGFGKGGGVGGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           FG G GVG G+GGG G G G GG  G G GGG GGGS  G GFG+GGG GGG G G
Sbjct: 193 FGAGGGVGGGAGGGLGGGVGGGGGGGSGGGGGIGGGSGHGGGFGAGGGVGGGVGGG 248

BLAST of Sed0011660 vs. ExPASy TrEMBL
Match: A0A1S4E2X3 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103499434 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 138/240 (57.50%), Postives = 145/240 (60.42%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTATQ----VEERLLFSDESGGSGGGFGG--GFGGG-GG 60
           M   WKRV+ LL LLCFHVL+          EE+ LF  +SGG GGGFGG  GFGGG GG
Sbjct: 22  MASGWKRVA-LLSLLCFHVLVYNVVAKEDGKEEKFLFFGKSGGLGGGFGGGSGFGGGFGG 81

Query: 61  GNGGGSGGGHGVGGGSGSGGGFGGGHGAGS--GSGSGSGSGSGNGFGGGHGVGGGSGSGG 120
           G GGG GGG G GGG G GGG+GGGHG G   G G G G G G G GGG GVGGG G GG
Sbjct: 82  GGGGGGGGGGGGGGGFGGGGGYGGGHGIGGGFGKGGGVGGGIGGGAGGGGGVGGGIGKGG 141

Query: 121 GFGGGHGVGSGSGGGRG-------------------VGGSNGRGG------GDGVGSGSG 180
           G GGG G G G GGG G                   VGG  G+GG      G G G G G
Sbjct: 142 GLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKVGGGIGKGGGLGGGAGGGFGKGGG 201

Query: 181 NGGGFGGGRGVGSGSGGGFGKGGGVGGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
            GGG G G G G G+GGGFGKGGGVGG FGK  GGGFGGG  GG G G GGGGGGG G G
Sbjct: 202 LGGGIGKGGGFGGGAGGGFGKGGGVGGGFGK--GGGFGGGVGGGAGGGGGGGGGGGGGGG 258

BLAST of Sed0011660 vs. ExPASy TrEMBL
Match: A0A0A0LIH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173020 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 134/223 (60.09%), Postives = 142/223 (63.68%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTATQ----VEERLLFSDESGGSGGGFGGGFG-GGGGGN 60
           M   WKRV+ LL LLCF V++          EE+ LF  +SGG G GFGGG G GGGGG 
Sbjct: 1   MASGWKRVA-LLSLLCFQVIVYNVVAKEDGKEEKFLFFGKSGGLGSGFGGGSGFGGGGGG 60

Query: 61  GGGSGGGHGVGGGSGSGGGFGGGHGAGS--GSGSGSGSGSGNGFGGGHGVGG-------- 120
           GGG GGG G GGG G G GFGGGHG G   G G G G G G G GGG GVGG        
Sbjct: 61  GGGGGGGGGGGGGFGGGVGFGGGHGIGGGFGKGGGVGGGVGGGAGGGSGVGGGIGKGGGL 120

Query: 121 GSGSGGGFGGGHGVGSGSGGGRGVGGSNGRGGGDGVGSGSGNGGGF--GGGRGVGSGSGG 180
           G GSGGGFG G G+G G+GGG G GG  G G G G G G G GGG   GGG G G G+GG
Sbjct: 121 GGGSGGGFGKGGGLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKGGGLGGGGGAGG 180

Query: 181 GFGKGGGVGGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           GFGKGGGVGG FGK  GGGFGGG  GG G G GGGGGGG G G
Sbjct: 181 GFGKGGGVGGGFGK--GGGFGGGVGGGAGGGGGGGGGGGGGGG 220

BLAST of Sed0011660 vs. ExPASy TrEMBL
Match: A0A5D3BTN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00390 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 130/215 (60.47%), Postives = 140/215 (65.12%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTATQ----VEERLLFSDESGGSGGGFGG--GFGGG-GG 60
           M   WKRV+ LL LLCFHVL+          EE+ LF  +SGG GGGFGG  GFGGG GG
Sbjct: 1   MASGWKRVA-LLSLLCFHVLVYNVVAKEDGKEEKFLFFGKSGGLGGGFGGGSGFGGGFGG 60

Query: 61  GNGGGSGGGHGVGGGSGSGGGFGGGHGAGS--GSGSGSGSGSGNGFGGGHGVGGGSGSGG 120
           G GGG GGG G GGG G GGG+GGGHG G   G G G G G G G GGG GVGGG G GG
Sbjct: 61  GGGGGGGGGGGGGGGFGGGGGYGGGHGIGGGFGKGGGVGGGIGGGAGGGGGVGGGIGKGG 120

Query: 121 GFGGGHGVGSGSGGGRGVGGSNGRGGGDGVGSGSGNGGGFGGGRGVGSGSGGGFGKGGGV 180
           G GGG G G G GGG G G   G G G G+G G G GGG GG    G+G+GGGFGKGGG+
Sbjct: 121 GLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKGGGLGG----GAGAGGGFGKGGGL 180

Query: 181 GGSFGKGDGGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           GG  GK  GGG GGG+  G GFG GGG GGG G G
Sbjct: 181 GGGIGK--GGGLGGGAGAGGGFGKGGGLGGGIGKG 208

BLAST of Sed0011660 vs. ExPASy TrEMBL
Match: A0A5N6RDW5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014750 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 126/221 (57.01%), Postives = 143/221 (64.71%), Query Frame = 0

Query: 1   MGGEWKRVSLLLCLLCFHVLMSTAT--------QVEERLLFSDESGGSGGGFGGGFGGGG 60
           MG   +RV+ LL LLC +VL+ +          + EE   FS  SGG GGGFGGGFGGGG
Sbjct: 1   MGRGPRRVA-LLSLLCLYVLVGSVVARNVVSVEKNEEERKFS--SGGKGGGFGGGFGGGG 60

Query: 61  GGNGG---GSGGGHGVGGGSGSGGGFGGGHGAGSGSGSGSGSGSGNGFGGGHGVGGGSGS 120
           G  GG   G G G G GGG+G GGG GGGHG G G+G G+G G+G GF      GGG+G 
Sbjct: 61  GAGGGGGVGGGAGGGFGGGAGGGGGIGGGHGIGGGAGGGAGGGAGGGF------GGGAGG 120

Query: 121 GGGFGGGHGVGSGSGGGRGVGG--SNGRGGGDGVGSGSGNGGGFGGGRGVGSGSGGGFGK 180
           GGG GGGHG+G G+GGG G GG    G G G GVG G+G GGG GGG G+G G+GGGFGK
Sbjct: 121 GGGLGGGHGIGGGAGGGFGKGGGIGGGIGKGGGVGGGAGGGGGLGGGHGIGGGAGGGFGK 180

Query: 181 GGGVGGSFGKGD--GGGFGGGSDGGRGFGSGGGGGGGSGSG 207
           GGG+GG  GKG   GGG GGG   G G G GGG GGG G G
Sbjct: 181 GGGIGGGIGKGGGVGGGAGGGFGKGGGHGIGGGAGGGFGKG 212

BLAST of Sed0011660 vs. ExPASy TrEMBL
Match: A0A1S2XY29 (glycine-rich cell wall structural protein isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101503606 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 129/216 (59.72%), Postives = 143/216 (66.20%), Query Frame = 0

Query: 6   KRVSLLLCLLCFHVLMSTAT--------QVEERLLFSDESGGSGGGFGGGFGGGGGGNGG 65
           KRV++LL LLC HV +++          + EE+ L   + GG GGGFGGG GG GGG GG
Sbjct: 6   KRVAILL-LLCAHVFVASVVARNVASVKEEEEKNLGFGKGGGFGGGFGGG-GGAGGGGGG 65

Query: 66  GSGGGHGVGGGSGSGGGFGGGHGAGSGSGSGSGSGSGNGFGGGHGVGGGSGSGGGFGGGH 125
           G GGG G+GGG+G GGGFGGG G G G G G G G G G GGGHG+GGG G GGG GGG 
Sbjct: 66  GFGGGGGIGGGAGGGGGFGGGAGGGHGIGGGGGFGGGGGAGGGHGIGGGIGKGGGLGGGG 125

Query: 126 GVGSGSGGGRGVGGSNGRGG--GDGVGSGSGNGGGFGGGRGVGSGSGGGFGKGGGVGGSF 185
           G G G G G G GG  G+GG  G G G G G GGGFG G GVG G+GGGFGKGGG+GG  
Sbjct: 126 GFGKGGGLGGGGGGGFGKGGGLGGGHGGGIGKGGGFGKGGGVGGGAGGGFGKGGGLGGGI 185

Query: 186 GKGDGGGFG-----GGSDGGRGFGSGGGGGGGSGSG 207
           GKG GGGFG     GG  GG GFG GGG GGG G G
Sbjct: 186 GKGGGGGFGKGGGVGGGAGG-GFGKGGGLGGGIGKG 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021752225.11.2e-0557.59glycine-rich cell wall structural protein-like [Chenopodium quinoa][more]
XP_016902584.11.6e-0557.50PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo][more]
XP_010670979.11.6e-0553.72PREDICTED: glycine-rich cell wall structural protein [Beta vulgaris subsp. vulga... [more]
KAA0050716.13.5e-0560.47hypothetical protein E6C27_scaffold560G00130 [Cucumis melo var. makuwa] >TYK0144... [more]
XP_021721872.11.0e-0458.22glycine-rich cell wall structural protein-like [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
P097894.0e-0465.91Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 ... [more]
Match NameE-valueIdentityDescription
A0A1S4E2X37.7e-0657.50glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103499... [more]
A0A0A0LIH71.0e-0560.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173020 PE=4 SV=1[more]
A0A5D3BTN61.7e-0560.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5N6RDW58.5e-0557.01Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014750 PE=4 SV=1[more]
A0A1S2XY291.4e-0459.72glycine-rich cell wall structural protein isoform X1 OS=Cicer arietinum OX=3827 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011660.1Sed0011660.1mRNA