Sed0011654 (gene) Chayote v1

Overview


Name	Sed0011654
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribonuclease MC-like
Location	LG08: 27350142 .. 27351154 (+)
RNA-Seq Expression	Sed0011654
Synteny	Sed0011654

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGTTGTCGAATTTTACTATACACGGTGTGTGGCCGCAAAAAGGAAACACATCAGTAATTAATTGCAAGGGCATTCCATACGATTTGAAAAAGGTAAGACTAAGCTCAACTCTCCAATCTCTATCTCAAACCTGCATTGATTATAATGATAGCTAAATAAGTTAACATATTATATTAATTCAATCTTAATTTCCATCTCATATTATTGAAATAAATATAGTCTTTATTGTTTAAAAAGCTTATGTTTGTATTTTTTTTCTTTTCATTTTAATAGGTTTCATTTATTTATTTTTGAAAGAGTTTTATTTATACTCTTAATTTTGGCGATATAAAAATTAATCTTTTGATAAGTTTATATGACTTGATTTGTAATGATTAAAAAAAAAAGCCCATAAATCATTTAGTTTAATTAACTAATATGTCATGATCACATGCAAGTATATTATGACCAATTTTACTACTTTGAAGTGTCTAGCATAAAATGCAAAAAATATTATATTCCAATACTAGAAGAAAAACCATGTAATATAAAAGATAATATATATATATATATAGCAAAAAAGAGGAGTGATTTTACTGATATCTATTATTTTTGTTTTCAGATTTCAAGTATACAAAGAAATTTAAACAAGGTTTGGCCGGATCTTGAAAATGGTCAAAGTAGTAACTTTTGGGGGTATGAGTGGAAGAAACATGGGATGTGTTCCGAAAGCATGTATGACGAGGCACAATACTTCCAAATGGCTTTGAACATGAAGAACAATATCAACCTTTTCGATGCCCTTAATGTTGGTGGGTTAAAACCAACCAAGCAATCTAAATTGGAAAAAGAAATTCGAACGGTTATAGTAAACAAATATGGGAAGGAACCAGGTCTTCGTTGCAAAGCCAAAACAAAAGGTCCAGAAACTTTGGTCGAGATTGTGATGTGCTTTGATGTTGATGGGATCACCCTTATCGACTGCCCTGCTGCTACTTCCAATTGCTCTCAATCTATTATTTTCTGA

mRNA sequence

ATGAAAGGGTTGTCGAATTTTACTATACACGGTGTGTGGCCGCAAAAAGGAAACACATCAGTAATTAATTGCAAGGGCATTCCATACGATTTGAAAAAGATTTCAAGTATACAAAGAAATTTAAACAAGGTTTGGCCGGATCTTGAAAATGGTCAAAGTAGTAACTTTTGGGGGTATGAGTGGAAGAAACATGGGATGTGTTCCGAAAGCATGTATGACGAGGCACAATACTTCCAAATGGCTTTGAACATGAAGAACAATATCAACCTTTTCGATGCCCTTAATGTTGGTGGGTTAAAACCAACCAAGCAATCTAAATTGGAAAAAGAAATTCGAACGGTTATAGTAAACAAATATGGGAAGGAACCAGGTCTTCGTTGCAAAGCCAAAACAAAAGGTCCAGAAACTTTGGTCGAGATTGTGATGTGCTTTGATGTTGATGGGATCACCCTTATCGACTGCCCTGCTGCTACTTCCAATTGCTCTCAATCTATTATTTTCTGA

Coding sequence (CDS)

ATGAAAGGGTTGTCGAATTTTACTATACACGGTGTGTGGCCGCAAAAAGGAAACACATCAGTAATTAATTGCAAGGGCATTCCATACGATTTGAAAAAGATTTCAAGTATACAAAGAAATTTAAACAAGGTTTGGCCGGATCTTGAAAATGGTCAAAGTAGTAACTTTTGGGGGTATGAGTGGAAGAAACATGGGATGTGTTCCGAAAGCATGTATGACGAGGCACAATACTTCCAAATGGCTTTGAACATGAAGAACAATATCAACCTTTTCGATGCCCTTAATGTTGGTGGGTTAAAACCAACCAAGCAATCTAAATTGGAAAAAGAAATTCGAACGGTTATAGTAAACAAATATGGGAAGGAACCAGGTCTTCGTTGCAAAGCCAAAACAAAAGGTCCAGAAACTTTGGTCGAGATTGTGATGTGCTTTGATGTTGATGGGATCACCCTTATCGACTGCCCTGCTGCTACTTCCAATTGCTCTCAATCTATTATTTTCTGA

Protein sequence

MKGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF

Homology

[Close]

BLAST of Sed0011654 vs. NCBI nr
Match: XP_022155091.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-47
Identity = 89/166 (53.61%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +GL  FTIHGVWPQKG TSV+NC G P+D  KISS++ +LN+VWP++  G +  FW +EW
Sbjct: 52  QGLRTFTIHGVWPQKGGTSVVNCPGTPFDFTKISSLETDLNRVWPNVITGDNKFFWSHEW 111

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES ++   YFQMA+NM+N+I+L +AL VGGL P   SK ++ +++ +   +GK
Sbjct: 112 NKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGK 171

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           EP LRC+  T     L+EIVMCFD DG+TLI+C   +SNC+ S IF
Sbjct: 172 EPVLRCRG-TGSNIRLIEIVMCFDDDGVTLINCNPVSSNCANSFIF 216

[Close]

BLAST of Sed0011654 vs. NCBI nr
Match: XP_022142280.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-46
Identity = 85/166 (51.20%), Postives = 122/166 (73.49%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +GL  FT+HG+WPQKG TSVINC G  +D  ++S +Q +LN+VWP++  G +  FWG+EW
Sbjct: 56  QGLRTFTVHGLWPQKGGTSVINCSGTRFDFTQVSHLQNDLNRVWPNVITGNNRFFWGHEW 115

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES +D   YFQMA+NM+++++L +AL VGGL P  ++K  + +++ I  ++GK
Sbjct: 116 NKHGICSESKFDMKAYFQMAINMRDSLDLMNALRVGGLAPNGRTKSRQRVQSAIRAQFGK 175

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           EP LRC+   +    L+EIVMCFD DG+TLI+C  A+SNC+ S IF
Sbjct: 176 EPVLRCRGTGRNVR-LIEIVMCFDDDGVTLINCNPASSNCANSFIF 220

[Close]

BLAST of Sed0011654 vs. NCBI nr
Match: XP_004147499.1 (ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-45
Identity = 85/166 (51.20%), Postives = 115/166 (69.28%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +G  +FTIHG+WPQKG  SV NC G  +D  KI+ ++ +LN VWP++  G +  FWG+EW
Sbjct: 52  RGTRSFTIHGLWPQKGGRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEW 111

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES +DEA+YFQ A+NM++ I+L   L  GG+ P   SK ++ + T I + +GK
Sbjct: 112 NKHGICSESKFDEAKYFQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGK 171

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           +P LRCK  + G   L EIVMCFD DG+TLI+C  A SNC+ S IF
Sbjct: 172 DPILRCKKASNGQVLLTEIVMCFDDDGVTLINCNKARSNCAGSFIF 217

[Close]

BLAST of Sed0011654 vs. NCBI nr
Match: BAA10891.1 (ribonuclease (RNase LC1) [Luffa aegyptiaca])

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-45
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +GL +FTIHGVWPQKG TSVINC G  +D  KIS ++  LN  WP++  G +  FWG+EW
Sbjct: 50  QGLRSFTIHGVWPQKGGTSVINCPGPTFDFTKISHLESTLNVDWPNVITGNNKWFWGHEW 109

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CS S +D+  YFQMA+NM+N+I+L  AL VGG+ P  +SK  + +++ I  + GK
Sbjct: 110 NKHGICSVSKFDQQAYFQMAINMRNSIDLLSALRVGGVVPNGRSKARQRVQSAIRAQLGK 169

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           EP LRC+  T     L+EIVMCFD DG+TLI+C  A SNC  S IF
Sbjct: 170 EPVLRCRG-TGRQSRLLEIVMCFDDDGVTLINCNPANSNCPNSFIF 214

[Close]

BLAST of Sed0011654 vs. NCBI nr
Match: XP_008443402.1 (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 8.0e-45
Identity = 82/166 (49.40%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +G  +FTIHG+WPQKG  SV NC G  +D  KI+ ++ +LN VWP++  G +  FWG+EW
Sbjct: 51  RGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKIAHLESDLNVVWPNVVTGNNKFFWGHEW 110

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES +D+A+YFQ A+NM+++I+L   L  GG+ P   SK ++ + T I + + K
Sbjct: 111 NKHGICSESKFDQAKYFQTAINMRHSIDLLSVLRTGGIVPNGASKAKQRVETAISSHFAK 170

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           +P LRCK  + G   L EIV+CFD DG+TLI+C  A SNC++S IF
Sbjct: 171 DPILRCKTASNGQVLLTEIVICFDDDGVTLINCNKARSNCARSFIF 216

[Close]

BLAST of Sed0011654 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.4e-36
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 3   GLSNFTIHGVWPQKGNTSVINC-KGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 62
           GL  FTIHG+WPQ   TS+ NC +G P+D+ KIS +Q  LN +WP++    +  FW +EW
Sbjct: 27  GLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVLRANNQQFWSHEW 86

Query: 63  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 122
            KHG CSES +++A YF++A++M+NN ++  AL      P  ++K  + I+  +  K+GK
Sbjct: 87  TKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGK 146

Query: 123 EPGLRCKAKTKGPET----LVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
            PGLRC+     P+T    LV++V CF  DG TLIDC   T  C  + IF
Sbjct: 147 FPGLRCRT---DPQTKVSYLVQVVACFAQDGSTLIDCTRDT--CGANFIF 191

[Close]

BLAST of Sed0011654 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQ-KGNTSVINCKGI-PYDLKKISSIQRNLNKVWPDL--ENGQSSNFW 61
           K  ++F IHG+WP  K  T   NC    P+D   IS +  ++ K WP L   +G    FW
Sbjct: 57  KPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFW 116

Query: 62  GYEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVN 121
            +EW+KHG CSES+ D+ +YFQ ALN+K   NL  AL   G+ P  +S   + IR  I  
Sbjct: 117 EHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKE 176

Query: 122 KYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCP 156
             G  P + C     G   L ++ +C D  G  LI+CP
Sbjct: 177 SIGFTPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECP 214

[Close]

BLAST of Sed0011654 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 60/172 (34.88%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGN-TSVINC-KGIPYDLKKISSIQRNLNKVWPDL--ENGQSSNFW 61
           K  ++F IHG+WP   + T   NC    PYD  +IS +  ++ + WP L   +G  S FW
Sbjct: 56  KPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFW 115

Query: 62  GYEWKKHGMCSES-MYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIV 121
            +EW+KHG C+ES + ++  YF+ AL++KN I+L   L    + P  +S     IR  I 
Sbjct: 116 SHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDGESYDLVNIRNAIK 175

Query: 122 NKYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPA-ATSNCSQSIIF 168
           +  G  P ++C     G   L ++ +C D  G +LI+CP      C  SI F
Sbjct: 176 SAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSSLIECPIFPGGKCGTSIEF 227

[Close]

BLAST of Sed0011654 vs. ExPASy Swiss-Prot
Match: P42815 (Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-20
Identity = 52/158 (32.91%), Postives = 76/158 (48.10%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQ-KGNTSVINCK-GIPYDLKKISSIQRNLNKVWPDLE--NGQSSNFW 61
           K  ++F IHG+WP  K      NC     +D  ++S +  +L + WP L   +     FW
Sbjct: 49  KPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFW 108

Query: 62  GYEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVN 121
            +EW+KHG C+ES  D+  YF+  L +K   NL  AL   G+KP  +    K+I   I  
Sbjct: 109 THEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQ 168

Query: 122 KYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCP 156
             G  PG+ C   +     L +I +C D      I+CP
Sbjct: 169 VVGFAPGIECNKDSSHNSQLYQIYLCVDTSASKFINCP 206

[Close]

BLAST of Sed0011654 vs. ExPASy Swiss-Prot
Match: Q38716 (Ribonuclease S-2 OS=Antirrhinum hispanicum OX=49039 GN=S2 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.9e-19
Identity = 56/158 (35.44%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 5   SNFTIHGVWPQKGNTSVINCKGIPYDLKKIS--SIQRNLNKVWPDLENGQ----SSNFWG 64
           S FTIHG+WP   +  + NC+    D+ KI+   + ++L   WPDL   Q       FW 
Sbjct: 61  SQFTIHGLWPDNKSWPLSNCRDTSADVLKITDKGLIQDLAVHWPDLTRRQRKVPGQKFWV 120

Query: 65  YEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNK 124
            +WKKHG C+  MY    YF  AL +K   N+ D L+   L P  Q     ++   I   
Sbjct: 121 TQWKKHGACALPMYSFNDYFVKALELKKRNNVLDMLSRKSLTPGDQRVDVSDVNGAITKV 180

Query: 125 YGKEPGLRCKAKTKGPE-TLVEIVMCFDVDGITLIDCP 156
            G    L+C      PE  L E+++CFD  G  +IDCP
Sbjct: 181 TGGIAILKC------PEGYLTEVIICFDPSGFPVIDCP 212

[Close]

BLAST of Sed0011654 vs. ExPASy TrEMBL
Match: A0A6J1DQN7 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 89/166 (53.61%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +GL  FTIHGVWPQKG TSV+NC G P+D  KISS++ +LN+VWP++  G +  FW +EW
Sbjct: 52  QGLRTFTIHGVWPQKGGTSVVNCPGTPFDFTKISSLETDLNRVWPNVITGDNKFFWSHEW 111

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES ++   YFQMA+NM+N+I+L +AL VGGL P   SK ++ +++ +   +GK
Sbjct: 112 NKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGK 171

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           EP LRC+  T     L+EIVMCFD DG+TLI+C   +SNC+ S IF
Sbjct: 172 EPVLRCRG-TGSNIRLIEIVMCFDDDGVTLINCNPVSSNCANSFIF 216

[Close]

BLAST of Sed0011654 vs. ExPASy TrEMBL
Match: A0A6J1CKH7 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 85/166 (51.20%), Postives = 122/166 (73.49%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +GL  FT+HG+WPQKG TSVINC G  +D  ++S +Q +LN+VWP++  G +  FWG+EW
Sbjct: 56  QGLRTFTVHGLWPQKGGTSVINCSGTRFDFTQVSHLQNDLNRVWPNVITGNNRFFWGHEW 115

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES +D   YFQMA+NM+++++L +AL VGGL P  ++K  + +++ I  ++GK
Sbjct: 116 NKHGICSESKFDMKAYFQMAINMRDSLDLMNALRVGGLAPNGRTKSRQRVQSAIRAQFGK 175

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           EP LRC+   +    L+EIVMCFD DG+TLI+C  A+SNC+ S IF
Sbjct: 176 EPVLRCRGTGRNVR-LIEIVMCFDDDGVTLINCNPASSNCANSFIF 220

[Close]

BLAST of Sed0011654 vs. ExPASy TrEMBL
Match: A0A0A0LC37 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.0e-46
Identity = 85/166 (51.20%), Postives = 115/166 (69.28%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +G  +FTIHG+WPQKG  SV NC G  +D  KI+ ++ +LN VWP++  G +  FWG+EW
Sbjct: 52  RGTRSFTIHGLWPQKGGRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEW 111

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES +DEA+YFQ A+NM++ I+L   L  GG+ P   SK ++ + T I + +GK
Sbjct: 112 NKHGICSESKFDEAKYFQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGK 171

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           +P LRCK  + G   L EIVMCFD DG+TLI+C  A SNC+ S IF
Sbjct: 172 DPILRCKKASNGQVLLTEIVMCFDDDGVTLINCNKARSNCAGSFIF 217

[Close]

BLAST of Sed0011654 vs. ExPASy TrEMBL
Match: Q40115 (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-45
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +GL +FTIHGVWPQKG TSVINC G  +D  KIS ++  LN  WP++  G +  FWG+EW
Sbjct: 50  QGLRSFTIHGVWPQKGGTSVINCPGPTFDFTKISHLESTLNVDWPNVITGNNKWFWGHEW 109

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CS S +D+  YFQMA+NM+N+I+L  AL VGG+ P  +SK  + +++ I  + GK
Sbjct: 110 NKHGICSVSKFDQQAYFQMAINMRNSIDLLSALRVGGVVPNGRSKARQRVQSAIRAQLGK 169

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           EP LRC+  T     L+EIVMCFD DG+TLI+C  A SNC  S IF
Sbjct: 170 EPVLRCRG-TGRQSRLLEIVMCFDDDGVTLINCNPANSNCPNSFIF 214

[Close]

BLAST of Sed0011654 vs. ExPASy TrEMBL
Match: A0A1S3B8Q3 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103486996 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.9e-45
Identity = 82/166 (49.40%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQKGNTSVINCKGIPYDLKKISSIQRNLNKVWPDLENGQSSNFWGYEW 61
           +G  +FTIHG+WPQKG  SV NC G  +D  KI+ ++ +LN VWP++  G +  FWG+EW
Sbjct: 51  RGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKIAHLESDLNVVWPNVVTGNNKFFWGHEW 110

Query: 62  KKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNKYGK 121
            KHG+CSES +D+A+YFQ A+NM+++I+L   L  GG+ P   SK ++ + T I + + K
Sbjct: 111 NKHGICSESKFDQAKYFQTAINMRHSIDLLSVLRTGGIVPNGASKAKQRVETAISSHFAK 170

Query: 122 EPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPAATSNCSQSIIF 168
           +P LRCK  + G   L EIV+CFD DG+TLI+C  A SNC++S IF
Sbjct: 171 DPILRCKTASNGQVLLTEIVICFDDDGVTLINCNKARSNCARSFIF 216

[Close]

BLAST of Sed0011654 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQ-KGNTSVINCKGI-PYDLKKISSIQRNLNKVWPDL--ENGQSSNFW 61
           K  ++F IHG+WP  K  T   NC    P+D   IS +  ++ K WP L   +G    FW
Sbjct: 57  KPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFW 116

Query: 62  GYEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVN 121
            +EW+KHG CSES+ D+ +YFQ ALN+K   NL  AL   G+ P  +S   + IR  I  
Sbjct: 117 EHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKE 176

Query: 122 KYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCP 156
             G  P + C     G   L ++ +C D  G  LI+CP
Sbjct: 177 SIGFTPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECP 214

[Close]

BLAST of Sed0011654 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein )

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-23
Identity = 58/171 (33.92%), Postives = 84/171 (49.12%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQ-KGNTSVINC-KGIPYDLKKISSIQRNLNKVWPDLE--NGQSSNFW 61
           K  ++F IHG+WP   G +   NC     +D  +IS +  +L K WP L   + +  NFW
Sbjct: 55  KPAADFGIHGLWPNYNGGSWPSNCDPDSQFDRSQISDLVSSLKKNWPTLSCPSNEGFNFW 114

Query: 62  GYEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVN 121
            +EW+KHG CSES+ D+ +YF+ AL +K   NL   L   G+ P        +I   I +
Sbjct: 115 EHEWEKHGTCSESVMDQHEYFENALKLKQKANLLQILKNSGINPDDGFYNLDKITNAIKD 174

Query: 122 KYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCPA-ATSNCSQSIIF 168
             G  PG+ C    +    L +I +C D  G   I+CP     +C   I F
Sbjct: 175 GIGFTPGIECNKDPERNAQLHQIYICVDTSGTEFIECPVLPRGSCPSQIQF 225

[Close]

BLAST of Sed0011654 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 )

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-21
Identity = 52/158 (32.91%), Postives = 76/158 (48.10%), Query Frame = 0


Query: 2   KGLSNFTIHGVWPQ-KGNTSVINCK-GIPYDLKKISSIQRNLNKVWPDLE--NGQSSNFW 61
           K  ++F IHG+WP  K      NC     +D  ++S +  +L + WP L   +     FW
Sbjct: 49  KPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFW 108

Query: 62  GYEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVN 121
            +EW+KHG C+ES  D+  YF+  L +K   NL  AL   G+KP  +    K+I   I  
Sbjct: 109 THEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQ 168

Query: 122 KYGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCP 156
             G  PG+ C   +     L +I +C D      I+CP
Sbjct: 169 VVGFAPGIECNKDSSHNSQLYQIYLCVDTSASKFINCP 206

[Close]

BLAST of Sed0011654 vs. TAIR 10
Match: AT1G14210.1 (Ribonuclease T2 family protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-20
Identity = 54/170 (31.76%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 5   SNFTIHGVWPQKGN-TSVINCKGIP-YDLKKISSIQRNLNKVWPDLE----NGQSSNFWG 64
           S+F IHG+WPQ  N T    C     +D+ KIS +   + K W +          +N W 
Sbjct: 56  SDFIIHGLWPQFNNGTWPAFCDQTNLFDISKISDLVCQMEKKWTEWGVWACPSNETNLWE 115

Query: 65  YEWKKHGMCSESMYDEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLEKEIRTVIVNK 124
           +EW KHG C +S++D+  YF+  L  K+ ++L + L   G+KP        EI+  I   
Sbjct: 116 HEWNKHGTCVQSIFDQHSYFRTNLKFKHKVHLLNILIQKGIKPNDGFYSLDEIKNAIKCA 175

Query: 125 YGKEPGLRCKAKTKGPETLVEIVMCFDVDGITLIDCP-AATSNCSQSIIF 168
            G  PG+ C    KG + L +I +C D      ++CP     +C+  I F
Sbjct: 176 IGFAPGIECNEDVKGNKQLFQIYICLDNYAKEFVECPYVPDKSCASKIKF 225

[Close]

BLAST of Sed0011654 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 52/153 (33.99%), Postives = 73/153 (47.71%), Query Frame = 0


Query: 5   SNFTIHGVWPQKGNTSVIN-CKGIPYDLKKISSIQRNLNKVWPDLE-------NGQSSNF 64
           + FTIHG+WP   + S  + C    +  K+IS++   L K WP L        NG   +F
Sbjct: 66  TQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSF 125

Query: 65  WGYEWKKHGMCSESMY-DEAQYFQMALNMKNNINLFDALNVGGLKPTKQSKLE-KEIRTV 124
           WG+EW+KHG CS  ++ DE  YF   LN+    N+ D L   G   +   K     I T 
Sbjct: 126 WGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTA 185

Query: 125 IVNKYGKEPGLRCKAKTKGPETLVEIVMCFDVD 148
           I N +   P + CK      + + EI +CF  D
Sbjct: 186 IQNAFHITPEVVCKR-----DAIDEIRICFYKD 213

The following BLAST results are available for this feature:

BLAST of Sed0011654 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155091.1	2.3e-47	53.61	ribonuclease MC-like [Momordica charantia]	[more]
XP_022142280.1	2.5e-46	51.20	ribonuclease MC-like [Momordica charantia]	[more]
XP_004147499.1	1.2e-45	51.20	ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [C...	[more]
BAA10891.1	6.1e-45	53.61	ribonuclease (RNase LC1) [Luffa aegyptiaca]	[more]
XP_008443402.1	8.0e-45	49.40	PREDICTED: ribonuclease MC-like [Cucumis melo]	[more]

BLAST of Sed0011654 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23540	5.4e-36	43.53	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
P42813	1.5e-25	38.61	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
P80022	1.2e-22	34.88	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
P42815	3.2e-20	32.91	Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1	[more]
Q38716	7.9e-19	35.44	Ribonuclease S-2 OS=Antirrhinum hispanicum OX=49039 GN=S2 PE=2 SV=1	[more]

BLAST of Sed0011654 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQN7	1.1e-47	53.61	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1	[more]
A0A6J1CKH7	1.2e-46	51.20	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1	[more]
A0A0A0LC37	6.0e-46	51.20	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1	[more]
Q40115	3.0e-45	53.61	Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A1S3B8Q3	3.9e-45	49.40	Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103486996 PE=3 SV=1	[more]

BLAST of Sed0011654 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02990.1	1.0e-26	38.61	ribonuclease 1	[more]
AT1G14220.1	5.4e-23	33.92	Ribonuclease T2 family protein	[more]
AT1G26820.1	2.3e-21	32.91	ribonuclease 3	[more]
AT1G14210.1	3.3e-20	31.76	Ribonuclease T2 family protein	[more]
AT2G39780.1	1.9e-15	33.99	ribonuclease 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 2..166 e-value: 2.3E-44 score: 153.6
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 4..167
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 4..154 e-value: 1.9E-35 score: 122.7
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 5..166
None	No IPR available	PANTHER	PTHR11240:SF49	RIBONUCLEASE 3	coord: 5..166
IPR033130	Ribonuclease T2, His active site 2	PROSITE	PS00531	RNASE_T2_2	coord: 56..67
IPR033697	Ribonuclease T2, eukaryotic	CDD	cd01061	RNase_T2_euk	coord: 2..167 e-value: 1.37182E-50 score: 159.035

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011654.1	Sed0011654.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding