Sed0011608 (gene) Chayote v1

Overview
NameSed0011608
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG11: 1631056 .. 1631975 (-)
RNA-Seq ExpressionSed0011608
SyntenySed0011608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTCTTCTTCTTTTACTTATCATCTCCAAAGCTCAAGGTATTGATTAATTCCTCAACCTTTTTTTTTTGTTTAAATGTATTGAATTTGACATTTATAGTTTGTAGTTTCTTCCATAAAATGGGTCTATAACAATTATTAGGGGTGTTAAAATACGTGACAACCTGATTAATATGAACTAATCTGACTTCCGCTATCTAATTTATTTGAGTTGTGTTGAGTTCAAATAAATGAAATTTTCTTATGTTGAGTTGATTCTTGACTTGACTCGAACTGACTTAATTTTTTTTATTAATATTGTTTTTTATTTAATTTATAACTTAATCATATATGTATATTTATTTTATTTAATTATTATTTTTGGAGTTCTCGTTTCTTGAGGTTGAATAGATGATAGAAGTTATTAGGTGGATTTCTATTAAATAAATTAAATAAAAATTATATGCTCTAATTAAAAACGAAAGTAAAAGTAAGATGAATCCAACCCAATCTAATTCAAAATAAGGATTAAGTTGTTCAAACACATAATAAGGTTGGCTCGGTTATGGATTTACCAATTTAAAATTTTGGATTGATTCAAAAAATTCTTTTAATCCAACTCAATTCATATATACCTCAATAATAAAAGATCAAATAATTTTGTGTGACATTGATTTCTTTTTTCTTTCTTTTTTTTATATATACATATATTTTTTATTGACATAATAATTTTGTTTTTGAAGGTATTAGATTGTTGGAGAAAGAATTAAACAAAGAGTACAAGGAAAATGTAGCTGTTTTGGGGGGTAAAAATGGAGGAGATTTGTTGGTGAGCATGAAGAGAAAAGCCTTAAGAAAATTACCCTCTTCTCATTGGCTACCAGGCTTCCAAGAAGATTACCATGGTCCAAGAAGTCATAATTCTAGGCACCATTAG

mRNA sequence

ATGGCGATTCTTCTTCTTTTACTTATCATCTCCAAAGCTCAAGGTATTAGATTGTTGGAGAAAGAATTAAACAAAGAGTACAAGGAAAATGTAGCTGTTTTGGGGGGTAAAAATGGAGGAGATTTGTTGGTGAGCATGAAGAGAAAAGCCTTAAGAAAATTACCCTCTTCTCATTGGCTACCAGGCTTCCAAGAAGATTACCATGGTCCAAGAAGTCATAATTCTAGGCACCATTAG

Coding sequence (CDS)

ATGGCGATTCTTCTTCTTTTACTTATCATCTCCAAAGCTCAAGGTATTAGATTGTTGGAGAAAGAATTAAACAAAGAGTACAAGGAAAATGTAGCTGTTTTGGGGGGTAAAAATGGAGGAGATTTGTTGGTGAGCATGAAGAGAAAAGCCTTAAGAAAATTACCCTCTTCTCATTGGCTACCAGGCTTCCAAGAAGATTACCATGGTCCAAGAAGTCATAATTCTAGGCACCATTAG

Protein sequence

MAILLLLLIISKAQGIRLLEKELNKEYKENVAVLGGKNGGDLLVSMKRKALRKLPSSHWLPGFQEDYHGPRSHNSRHH
Homology
[Close]
BLAST of Sed0011608 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 9.6e-09
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 1  MAILLLLLIISKAQGIRLLEKELNKEYKENVAVLGGKNGGDLLVSMK----RKALRKLPS 60
          MA+LLL LIIS+A+GIRLL+K ++KE K        +NGGDLL +MK     KA RK P 
Sbjct: 6  MAVLLLFLIISEAEGIRLLDKRMSKEDK--------RNGGDLLGTMKWRAPNKAWRK-PY 65

Query: 61 SHWLPGFQEDYH 69
          SHWLPG QEDYH
Sbjct: 66 SHWLPGIQEDYH 68

[Close]
BLAST of Sed0011608 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.1e-17
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 1  MAILLL-LLIISKAQGIRLLEKELNKEYKENVAVLGGKNGGDLLVSMKR----KALRKLP 60
          MA+LLL L+I+ +AQGIRLLEK ++KEYK++   L  KNGGD L++MK+    +ALRK P
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRK-P 60

Query: 61 SSHWLPGFQEDYHGPRSHNSRHH 79
           SHWLPG QEDYHGPRSH SRHH
Sbjct: 61 YSHWLPGIQEDYHGPRSHKSRHH 82

The following BLAST results are available for this feature:
BLAST of Sed0011608 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6586348.19.6e-0959.72Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ... [more]
BLAST of Sed0011608 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0011608 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ486.1e-1765.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1[more]
BLAST of Sed0011608 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011608.1Sed0011608.1mRNA