Sed0011597 (gene) Chayote v1

Overview


Name	Sed0011597
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase RNF181-like
Location	LG14: 2052390 .. 2052830 (+)
RNA-Seq Expression	Sed0011597
Synteny	Sed0011597

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTCTACAGTTAACGACGCTGCCAACCAACCCGCTCTGCGACTCGAAGTGAACTTAGCCCGGCGCGTGGTCAACATCGAATCAAACGGAACCATGAACATTGTCATCCGAATCGGGAACAATTACCAAAGCACCATCACACCTCCACTCCCCGCCAGGTACCACCTGGAGCGGGAGCCGGCGGGGTTCAGGTTGGTTCAGGAAAACCCTACGCCCGCAGGAGCGGAGAGGTTTCAAATGGAGAAATTGGAAGAGAAGGAAGAACAACGAGATTTGAAAAATTGCAGTATATGTTTGGAGGAAGTAGATTGCAAGAAGTGTGAATGCGTAAGGATCGTCTGCGGACATGTGTATCATAAATCATGCATCCTCAACTGGCTTAATAGTTCCAATTCTTGCCCTATGTGTAGAACCCCAGTGCCCTTAAAATTATAA

mRNA sequence

ATGCCTTCTTCTACAGTTAACGACGCTGCCAACCAACCCGCTCTGCGACTCGAAGTGAACTTAGCCCGGCGCGTGGTCAACATCGAATCAAACGGAACCATGAACATTGTCATCCGAATCGGGAACAATTACCAAAGCACCATCACACCTCCACTCCCCGCCAGGTACCACCTGGAGCGGGAGCCGGCGGGGTTCAGGTTGGTTCAGGAAAACCCTACGCCCGCAGGAGCGGAGAGGTTTCAAATGGAGAAATTGGAAGAGAAGGAAGAACAACGAGATTTGAAAAATTGCAGTATATGTTTGGAGGAAGTAGATTGCAAGAAGTGTGAATGCGTAAGGATCGTCTGCGGACATGTGTATCATAAATCATGCATCCTCAACTGGCTTAATAGTTCCAATTCTTGCCCTATGTGTAGAACCCCAGTGCCCTTAAAATTATAA

Coding sequence (CDS)

ATGCCTTCTTCTACAGTTAACGACGCTGCCAACCAACCCGCTCTGCGACTCGAAGTGAACTTAGCCCGGCGCGTGGTCAACATCGAATCAAACGGAACCATGAACATTGTCATCCGAATCGGGAACAATTACCAAAGCACCATCACACCTCCACTCCCCGCCAGGTACCACCTGGAGCGGGAGCCGGCGGGGTTCAGGTTGGTTCAGGAAAACCCTACGCCCGCAGGAGCGGAGAGGTTTCAAATGGAGAAATTGGAAGAGAAGGAAGAACAACGAGATTTGAAAAATTGCAGTATATGTTTGGAGGAAGTAGATTGCAAGAAGTGTGAATGCGTAAGGATCGTCTGCGGACATGTGTATCATAAATCATGCATCCTCAACTGGCTTAATAGTTCCAATTCTTGCCCTATGTGTAGAACCCCAGTGCCCTTAAAATTATAA

Protein sequence

MPSSTVNDAANQPALRLEVNLARRVVNIESNGTMNIVIRIGNNYQSTITPPLPARYHLEREPAGFRLVQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPLKL

Homology

[Close]

BLAST of Sed0011597 vs. NCBI nr
Match: XP_023512244.1 (RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 79  RFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMC 138
           R++MEK+E +EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+C
Sbjct: 157 RYRMEKVEAEEEEEDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLC 216

Query: 139 RTPVPL 145
           RT  PL
Sbjct: 217 RTKFPL 222

[Close]

BLAST of Sed0011597 vs. NCBI nr
Match: XP_022985641.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-15
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 79  RFQMEKLEEKEEQR-DLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPM 138
           R++MEK+EEKEE+  DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+
Sbjct: 158 RYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPL 217

Query: 139 CRTPVPL 145
           CRT  PL
Sbjct: 218 CRTQFPL 224

[Close]

BLAST of Sed0011597 vs. NCBI nr
Match: XP_022944063.1 (RING-H2 finger protein ATL16-like [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 7.6e-15
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 79  RFQMEKLE-EKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPM 138
           R++MEK+E E+EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+
Sbjct: 157 RYRMEKVEAEEEEEEDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPL 216

Query: 139 CRTPVPL 145
           CRT  PL
Sbjct: 217 CRTQFPL 223

[Close]

BLAST of Sed0011597 vs. NCBI nr
Match: KAG6571005.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-15
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 67  LVQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCIL 126
           +V+E     G  R +  + EE+EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI 
Sbjct: 148 VVEEVAAANGRYRMEKVEAEEEEEEEDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIF 207

Query: 127 NWLNSSNSCPMCRTPVPL 145
            WL++S+SCP+CRT  PL
Sbjct: 208 RWLDNSDSCPLCRTQFPL 225

[Close]

BLAST of Sed0011597 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-15
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 72  PTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNS 131
           P   G E+  +E++ E + Q +L +C ICLEE+ C+K E +RI CGHVYH+SC+  WL  
Sbjct: 150 PPRRGVEKVAVERVRELKSQEELGDCCICLEELSCEKREVIRIPCGHVYHESCVFKWLRK 209

Query: 132 SNSCPMCRTPVPL 145
           +NSCP+CR P+PL
Sbjct: 210 NNSCPLCRKPLPL 222

[Close]

BLAST of Sed0011597 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-06
Identity = 34/115 (29.57%), Postives = 52/115 (45.22%), Query Frame = 0


Query: 30  SNGTMNIVIRIGNNYQSTITPPLPARYHLEREPAGFRLVQENPTPAGA-ERFQMEKLEEK 89
           + G+  I I  GN       P L   +  E+  AG       P P  A +     K+ ++
Sbjct: 124 NGGSPGIGITRGNTGDYFFGPGLEELF--EQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 183

Query: 90  EEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP 144
             +    NC +C +E +    E  ++ C H+YH  CI+ WL   NSCP+CR  +P
Sbjct: 184 HLRSSDSNCPVCKDEFELGS-EAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

[Close]

BLAST of Sed0011597 vs. ExPASy Swiss-Prot
Match: P90990 (E3 ubiquitin-protein ligase trul-1 OS=Caenorhabditis elegans OX=6239 GN=trul-1 PE=3 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-06
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 96  NCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP 144
           +CSIC E++  +  +   IVCGH+YH  CI  W+ +   CP CR  VP
Sbjct: 12  SCSICFEDLK-QNDKISAIVCGHIYHHGCISQWIATKRQCPSCRRTVP 58

[Close]

BLAST of Sed0011597 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-06
Identity = 22/60 (36.67%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 84  KLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP 143
           K+ +K  +    +C +C +E + K  E  ++ C H+YH  CI+ WL   NSCP+CR  +P
Sbjct: 173 KITQKHLKSSDSHCPVCKDEFELKS-EAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELP 231

[Close]

BLAST of Sed0011597 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05
Identity = 35/115 (30.43%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 40  IGNNYQSTITPPLP---ARYHLEREPAGFRLVQENPTPA--GAERFQMEK---------- 99
           + N Y S ++PP+P      +L+  P      Q N + A  G  +   EK          
Sbjct: 31  LSNAYSSPLSPPIPLAITNINLQTSPPKLPRTQGNSSEASPGLTQVVPEKKTWHVDDLTD 90

Query: 100 LEEKEEQRD-LKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMC 139
            E K++ R+ +  C ICLEE +    + +   CGH +H +CIL W+  S +CP+C
Sbjct: 91  FELKKQYREAIDECPICLEEYEIDNPKLL-TKCGHDFHLACILAWMERSEACPVC 144

[Close]

BLAST of Sed0011597 vs. ExPASy Swiss-Prot
Match: Q7ZW78 (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 97  CSICLEEVDCKKCECVR-IVCGHVYHKSCILNWLNSSNSCPMCRTPVP 144
           C +CL E +  + E VR + C H++H  CIL WLN +NSCP+CR  +P
Sbjct: 79  CPVCLLEFE--EQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELP 124

[Close]

BLAST of Sed0011597 vs. ExPASy TrEMBL
Match: A0A6J1J8T7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 79  RFQMEKLEEKEEQR-DLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPM 138
           R++MEK+EEKEE+  DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+
Sbjct: 158 RYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPL 217

Query: 139 CRTPVPL 145
           CRT  PL
Sbjct: 218 CRTQFPL 224

[Close]

BLAST of Sed0011597 vs. ExPASy TrEMBL
Match: A0A0A0KYC0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 68  VQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILN 127
           ++E P   G     +E+L + + + +  +CS+CL+E+DC+K E +RI CGHVYH+SCI  
Sbjct: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180

Query: 128 WLNSSNSCPMCRTPVPL 145
           WLNSSNSCP+CR+  PL
Sbjct: 181 WLNSSNSCPLCRSSFPL 197

[Close]

BLAST of Sed0011597 vs. ExPASy TrEMBL
Match: A0A6J1FXN0 (RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111448613 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-15
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 79  RFQMEKLE-EKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPM 138
           R++MEK+E E+EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+
Sbjct: 157 RYRMEKVEAEEEEEEDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPL 216

Query: 139 CRTPVPL 145
           CRT  PL
Sbjct: 217 CRTQFPL 223

[Close]

BLAST of Sed0011597 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-15
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 76  GAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSC 135
           G  + + E+L+ +E+  DL +CSICL+E+ C+K E +RI CGHVYH+SCI  WL + NSC
Sbjct: 153 GVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPCGHVYHESCIFKWLKNHNSC 212

Query: 136 PMCRTPVPLK 146
           P+CR P+PLK
Sbjct: 213 PLCRKPLPLK 222

[Close]

BLAST of Sed0011597 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-15
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 76  GAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSC 135
           G  + + E+L+ +E+  DL +CSICL+E+ C+K E +RI CGHVYH+SCI  WL + NSC
Sbjct: 153 GVGKARGERLKSEEKVEDLGDCSICLDELSCEKREVIRIPCGHVYHESCIFKWLKNHNSC 212

Query: 136 PMCRTPVPLK 146
           P+CR P+PLK
Sbjct: 213 PLCRKPLPLK 222

[Close]

BLAST of Sed0011597 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-08
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 84  KLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP 143
           K+  +    D+  C++C+EE      +   + C H+YHK CI+ WL  +NSCP+CR  +P
Sbjct: 211 KITPQHLTNDMSQCTVCMEEF-IVGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDLP 270

Query: 144 L 145
           L
Sbjct: 271 L 270

[Close]

BLAST of Sed0011597 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-08
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 81  QMEKLEEKEEQRDLKNCSICLEEV--DCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMC 140
           +M+  E K  + + + CSICLE +    K  +  R+ C HV+H  C+L WL   N+CP+C
Sbjct: 141 RMKAEEFKSLKMETEPCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLC 200

Query: 141 RTPV 143
           RT +
Sbjct: 201 RTEI 204

[Close]

BLAST of Sed0011597 vs. TAIR 10
Match: AT4G12140.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-08
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 82  MEKLEEKEEQRDLKNCSICLEE-VDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRT 141
           M+  E K    +  +CSICL+  V   K    R+ C HV+H SC++ WL   N+CPMCRT
Sbjct: 138 MKAEELKSFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCLVEWLKRKNTCPMCRT 197

[Close]

BLAST of Sed0011597 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.3e-08
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 75  AGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNS 134
           AG E   +E   E+  +R L  C+IC EE+   +     + C H YHK CI NWL++ N+
Sbjct: 75  AGEELPVVEFTAEEMMERGLVVCAICREELAANE-RLSELPCRHYYHKECISNWLSNRNT 134

Query: 135 CPMCRTPVPL 145
           CP+CR  V L
Sbjct: 135 CPLCRHNVEL 143

[Close]

BLAST of Sed0011597 vs. TAIR 10
Match: AT3G28620.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 77  AERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWL-NSSNSC 136
           A  F  E  +E+EE+   K C+ICLE +   +  C    C H +H+ C+  WL   +NSC
Sbjct: 142 ATDFDQESQQEEEEES--KTCAICLENLLRSEDYCEMPTCSHYFHEPCLTEWLTRDNNSC 201

Query: 137 PMCRTPV 143
           P+CR PV
Sbjct: 202 PLCRKPV 206

The following BLAST results are available for this feature:

BLAST of Sed0011597 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512244.1	1.5e-15	59.09	RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985641.1	2.6e-15	61.19	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]
XP_022944063.1	7.6e-15	59.70	RING-H2 finger protein ATL16-like [Cucurbita moschata]	[more]
KAG6571005.1	9.9e-15	51.28	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_038883574.1	9.9e-15	50.68	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]

BLAST of Sed0011597 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22197	5.1e-06	29.57	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
P90990	5.1e-06	43.75	E3 ubiquitin-protein ligase trul-1 OS=Caenorhabditis elegans OX=6239 GN=trul-1 P...	[more]
Q94AK4	6.7e-06	36.67	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
Q93ZF6	1.1e-05	30.43	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]
Q7ZW78	1.1e-05	47.92	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2	[more]

BLAST of Sed0011597 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J8T7	1.3e-15	61.19	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE...	[more]
A0A0A0KYC0	3.7e-15	49.35	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G003650 P...	[more]
A0A6J1FXN0	3.7e-15	59.70	RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111448613 ...	[more]
A0A5D3E1S5	8.2e-15	54.29	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	8.2e-15	54.29	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]

BLAST of Sed0011597 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60360.1	5.6e-08	37.70	RING/U-box superfamily protein	[more]
AT4G05350.1	5.6e-08	39.06	RING/U-box superfamily protein	[more]
AT4G12140.1	5.6e-08	43.33	RING/U-box superfamily protein	[more]
AT3G30460.1	7.3e-08	41.43	RING/U-box superfamily protein	[more]
AT3G28620.1	1.2e-07	40.30	Zinc finger, C3HC4 type (RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 97..138 e-value: 9.1E-6 score: 35.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 96..139 e-value: 1.1E-10 score: 41.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 97..139 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 75..144 e-value: 9.2E-17 score: 62.0
None	No IPR available	PANTHER	PTHR15710:SF137	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 77..142
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 77..142
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011597.1	Sed0011597.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity