Sed0011533 (gene) Chayote v1

Overview


Name	Sed0011533
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG07: 12375270 .. 12376288 (+)
RNA-Seq Expression	Sed0011533
Synteny	Sed0011533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAATTTCTAAGGCTCAAGGTGTCGATTGACATTCGTTTACCGCTGAGAAGAGCTCTGAAGGTGAAGAGTGGAGCAATGACGGATGAAAAATGGGTTCGAATTTTGTATGAAAAATTACCTGATTTTTGTCATGGTTGTGGGAGAATAGGTCACTTGGCTAGTGGATGCACTTTTGTGGTCATAGGTGAAGGTCTTCGGTTTCCATTCGGAGAAGATTTGAGAGAGCCGACGAATTACTTCAAAGGGGATAGATCTGATTTTCAGAGGCATGGAGGAAGAGGGAGAGGTCGTGGAAGAGGAAGATTGAATGAACATAGATCAGAGGACCTCACTTTTTCGGAAGGGCGCGCTTGTGAGAAGGTTGGTTGCGATCAAAGAAGATCGGAGGAGATGAAGGAAGAGAAGTTTCAGGCGAGATTTGAGAGGAGCTCTACTACCAACGGTTCGCCGGACTTTACCTCGGGAGAAGGCGAGGTTTTTCGGGGTGAAGGTCAGTTTGCGCAGAAGAATTCGGCCAATTTTGGGGCTAGGTCAGGTACGGAGGAAAAAAAACTGTGCAGAGACTTCTCAAATTAGTTTAATGAAGTGGCAGAGAAGGGACATGTGGCAAAATCTCAAAATGACAGATGTGATGAAAAAGGGAAAGCTAAAGTTATTGCAAAAGGTTTGAACGAGCTTTTATTTAGGCCATTTGATATTCATATTAAAGCCCACCAAAACTTGGATTTGAGAGCTTCTTTTTATGGGTCAAGGAAATGTGTGGTAATTAATGAATTGGGTTCCATGAATAATCCTAAAAAAGGAAGCAAGAATTTACATTCTGCCTGTGTGGAGAAAAAATTTAAAAATGTGGTTAAAAAGTTGATTATTCTAATGAAAATGATTTCAAAAAAGAAAAAAAAATGATATTTGAAGATATTGATGGGTTTAGAGACCCAATTGGACCAATTGCGGAGGATTTAACCCTTTTCCCTTCAAAAATTGGAGGAGCAGCAAGATTTTTCAAGGAATGA

mRNA sequence

ATGGGAAAATTTCTAAGGCTCAAGGTGTCGATTGACATTCGTTTACCGCTGAGAAGAGCTCTGAAGGTGAAGAGTGGAGCAATGACGGATGAAAAATGGGTTCGAATTTTGTATGAAAAATTACCTGATTTTTGTCATGGTTGTGGGAGAATAGGTCACTTGGCTAGTGGATGCACTTTTGTGGTCATAGGTGAAGGTCTTCGGTTTCCATTCGGAGAAGATTTGAGAGAGCCGACGAATTACTTCAAAGGGGATAGATCTGATTTTCAGAGGCATGGAGGAAGAGGGAGAGGTCGTGGAAGAGGAAGATTGAATGAACATAGATCAGAGGACCTCACTTTTTCGGAAGGGCGCGCTTGTGAGAAGGTTGGTTGCGATCAAAGAAGATCGGAGGAGATGAAGGAAGAGAAGTTTCAGGCGAGATTTGAGAGGAGCTCTACTACCAACGGTTCGCCGGACTTTACCTCGGGAGAAGGCGAGGTTTTTCGGGGTGAAGGTCAGTTTGCGCAGAAGAATTCGGCCAATTTTGGGGCTAGGTCAGATATTGATGGGTTTAGAGACCCAATTGGACCAATTGCGGAGGATTTAACCCTTTTCCCTTCAAAAATTGGAGGAGCAGCAAGATTTTTCAAGGAATGA

Coding sequence (CDS)

ATGGGAAAATTTCTAAGGCTCAAGGTGTCGATTGACATTCGTTTACCGCTGAGAAGAGCTCTGAAGGTGAAGAGTGGAGCAATGACGGATGAAAAATGGGTTCGAATTTTGTATGAAAAATTACCTGATTTTTGTCATGGTTGTGGGAGAATAGGTCACTTGGCTAGTGGATGCACTTTTGTGGTCATAGGTGAAGGTCTTCGGTTTCCATTCGGAGAAGATTTGAGAGAGCCGACGAATTACTTCAAAGGGGATAGATCTGATTTTCAGAGGCATGGAGGAAGAGGGAGAGGTCGTGGAAGAGGAAGATTGAATGAACATAGATCAGAGGACCTCACTTTTTCGGAAGGGCGCGCTTGTGAGAAGGTTGGTTGCGATCAAAGAAGATCGGAGGAGATGAAGGAAGAGAAGTTTCAGGCGAGATTTGAGAGGAGCTCTACTACCAACGGTTCGCCGGACTTTACCTCGGGAGAAGGCGAGGTTTTTCGGGGTGAAGGTCAGTTTGCGCAGAAGAATTCGGCCAATTTTGGGGCTAGGTCAGATATTGATGGGTTTAGAGACCCAATTGGACCAATTGCGGAGGATTTAACCCTTTTCCCTTCAAAAATTGGAGGAGCAGCAAGATTTTTCAAGGAATGA

Protein sequence

MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRGRGRLNEHRSEDLTFSEGRACEKVGCDQRRSEEMKEEKFQARFERSSTTNGSPDFTSGEGEVFRGEGQFAQKNSANFGARSDIDGFRDPIGPIAEDLTLFPSKIGGAARFFKE

Homology

[Close]

BLAST of Sed0011533 vs. NCBI nr
Match: XP_039815364.1 (uncharacterized protein LOC120678302 [Panicum virgatum])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 47/105 (44.76%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 2   GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFV 61
           G+FLR+KV I+I  PLRR + +  G    E+W  I YE LPDFC+ CGRIGH    C   
Sbjct: 101 GRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFCYVCGRIGHTDKAC-LT 160

Query: 62  VIGEGLRFPFGEDLR--EPTNYFKGD--RSDFQRHGGRGRGRGRG 103
            +  G + PFG +LR   P   F G+  RS   R  G GR  G G
Sbjct: 161 KLAAGEQAPFGRELRYIPPKKKFGGESWRSQENRRSGGGRSGGSG 204

[Close]

BLAST of Sed0011533 vs. NCBI nr
Match: XP_039827601.1 (uncharacterized protein LOC120689378 [Panicum virgatum])

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-12
Identity = 47/105 (44.76%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 2   GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFV 61
           G+FLR+KV I+I  PLRR + +  G    E+W  I YE LPDFC+ CGRIGH    C   
Sbjct: 164 GRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFCYVCGRIGHTDKACLTK 223

Query: 62  VIGEGLRFPFGEDLR--EPTNYFKGD--RSDFQRHGGRGRGRGRG 103
           +  E  + PFG +LR   P   F G+  RS   R  G GR  G G
Sbjct: 224 LAAEE-QAPFGRELRYIPPKKKFGGESWRSQENRRSGGGRSGGSG 267

[Close]

BLAST of Sed0011533 vs. NCBI nr
Match: TXG61726.1 (hypothetical protein EZV62_013089 [Acer yangbiense])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-09
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 2   GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFV 61
           GK+LR+KV IDI  PL+R L++K G   D   V + YE+LPDFC  CGRIGH+   CT  
Sbjct: 30  GKYLRVKVQIDISKPLKRWLRLKLGKTEDIVVVGLKYERLPDFCFVCGRIGHVVKECTDE 89

Query: 62  V------------IGEGLRFPFGEDLREPTNYFKGDRSDFQR 92
           +             G+ LR P G D  +     +G  S F+R
Sbjct: 90  LARLGALDGTATRFGQWLRAP-GTDRLQTKGSGQGSESSFER 130

[Close]

BLAST of Sed0011533 vs. NCBI nr
Match: OQU92454.1 (hypothetical protein SORBI_3001G347001 [Sorghum bicolor])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-09
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTF 60
           +G FLR+KV IDIR PL R + ++     D+ W  I YE LP+FC+GCG +GH+   C  
Sbjct: 29  VGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFCYGCGLLGHVEKECDS 88

Query: 61  VVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRGRGRLNEHR-SEDLTFSE 117
            V  E     FG+ LR     +KG + D ++    G   G G+    R S  L+F++
Sbjct: 89  CVEEEVGFKQFGDWLRVTPTRWKG-QGDQRQRWSEGGSSGSGKFGRSRESGKLSFAQ 144

[Close]

BLAST of Sed0011533 vs. NCBI nr
Match: KAF7114636.1 (hypothetical protein RHSIM_RhsimUnG0081100 [Rhododendron simsii])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-09
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 4   FLRLKVSIDIRLPLRRALKVKSGAMTDEK-WVRILYEKLPDFCHGCGRIGHLASGCTFVV 63
           FLR++V ID+   L +   ++    +DE  W+   YEKLPDFC+ CGR+GH   GC FV 
Sbjct: 153 FLRVRVEIDVNKALPKGFWLRRKKESDEDLWISYRYEKLPDFCYACGRVGHDNRGCKFVP 212

Query: 64  IGEGLRFPFGEDLR 77
             EG+   +G DLR
Sbjct: 213 RNEGMNSGYGPDLR 226

[Close]

BLAST of Sed0011533 vs. ExPASy TrEMBL
Match: A0A5C7HZB5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013089 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 2   GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFV 61
           GK+LR+KV IDI  PL+R L++K G   D   V + YE+LPDFC  CGRIGH+   CT  
Sbjct: 30  GKYLRVKVQIDISKPLKRWLRLKLGKTEDIVVVGLKYERLPDFCFVCGRIGHVVKECTDE 89

Query: 62  V------------IGEGLRFPFGEDLREPTNYFKGDRSDFQR 92
           +             G+ LR P G D  +     +G  S F+R
Sbjct: 90  LARLGALDGTATRFGQWLRAP-GTDRLQTKGSGQGSESSFER 130

[Close]

BLAST of Sed0011533 vs. ExPASy TrEMBL
Match: A0A1Z5S941 (CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347001 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTF 60
           +G FLR+KV IDIR PL R + ++     D+ W  I YE LP+FC+GCG +GH+   C  
Sbjct: 29  VGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFCYGCGLLGHVEKECDS 88

Query: 61  VVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRGRGRLNEHR-SEDLTFSE 117
            V  E     FG+ LR     +KG + D ++    G   G G+    R S  L+F++
Sbjct: 89  CVEEEVGFKQFGDWLRVTPTRWKG-QGDQRQRWSEGGSSGSGKFGRSRESGKLSFAQ 144

[Close]

BLAST of Sed0011533 vs. ExPASy TrEMBL
Match: K3ZNG2 (CCHC-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 2   GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFV 61
           G+ LR+KV +DIRLPLRR + V  G    ++W  + YE LP+FC+ CG IGH+   CT  
Sbjct: 164 GRVLRVKVRLDIRLPLRRGITVDLGEGVGDRWCPVQYEFLPEFCYVCGIIGHVDKTCT-K 223

Query: 62  VIGEGLRFPFGEDLR 77
            +G+  R PF   LR
Sbjct: 224 KLGKEERAPFDRALR 237

[Close]

BLAST of Sed0011533 vs. ExPASy TrEMBL
Match: A0A5C7HXM5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_012275 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-09
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTF 60
           M KFLR++V ID+ +PLRR L+V +     E  + + YE+LPDFC  CG +GH    C  
Sbjct: 122 MVKFLRVRVKIDVDIPLRRCLRVDTMGDGVESVMLLKYERLPDFCFRCGHLGHSCRDCPD 181

Query: 61  VVIGE---GLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRG---RGRGRLNEHRSED 112
            + G+   G  F +G  +R PT         F+R+GG GR    RG G     +S D
Sbjct: 182 KLTGDVAIGEEFLYGPWMRAPT--------PFKRNGGWGRRWELRGGGETVRFQSRD 230

[Close]

BLAST of Sed0011533 vs. ExPASy TrEMBL
Match: K4AML8 (CCHC-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 2   GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFV 61
           G+ LR+KV +DIRLPLRR + V  G    ++W  + YE LP+FC+ CG IGH    CT  
Sbjct: 164 GRVLRVKVRLDIRLPLRRGITVDLGEGVGDRWCPVQYEFLPEFCYVCGIIGHFDKTCT-K 223

Query: 62  VIGEGLRFPF 72
            +G+  R PF
Sbjct: 224 KLGKEERAPF 232

The following BLAST results are available for this feature:

BLAST of Sed0011533 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039815364.1	1.3e-12	44.76	uncharacterized protein LOC120678302 [Panicum virgatum]	[more]
XP_039827601.1	3.9e-12	44.76	uncharacterized protein LOC120689378 [Panicum virgatum]	[more]
TXG61726.1	2.4e-09	41.18	hypothetical protein EZV62_013089 [Acer yangbiense]	[more]
OQU92454.1	2.4e-09	37.61	hypothetical protein SORBI_3001G347001 [Sorghum bicolor]	[more]
KAF7114636.1	3.1e-09	44.59	hypothetical protein RHSIM_RhsimUnG0081100 [Rhododendron simsii]	[more]

BLAST of Sed0011533 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HZB5	1.1e-09	41.18	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01308...	[more]
A0A1Z5S941	1.1e-09	37.61	CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347...	[more]
K3ZNG2	1.5e-09	46.67	CCHC-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]
A0A5C7HXM5	5.7e-09	38.46	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01227...	[more]
K4AML8	1.3e-08	47.14	CCHC-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]

BLAST of Sed0011533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 11..59 e-value: 5.3E-11 score: 42.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..104
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 45..58 score: 8.729682

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011533.1	Sed0011533.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding