Sed0011531 (gene) Chayote v1

Overview


Name	Sed0011531
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Tetratricopeptide-like helical
Location	LG13: 7175818 .. 7177709 (-)
RNA-Seq Expression	Sed0011531
Synteny	Sed0011531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATCGATTCTGACGAGTGCGCTATGAATGCTCGAGAATGGGAAAGAAATGAAGCGGAGGGTGACGTTCCACCACATTTACTAGCCGAGGAAGACGAGGGCGGTGACGAAGATGTAATTAGCAATGCTCGAGACTATATGCTTTCGAGCGTTTTGTGTAGATTAAGGACTATAGAGAAGAGGGCTTCTATTGCAGGATTTCTGATGGTGATGGCCACGAAGATAATTAGTGCATGGAGATTCAAGTTCTTACAAGTGTTTATGGACATGCTGGATATTTTGCTTCCAATTTTTCTGTTTCGATTGCTTAATGAGATGTAGAATAAAATGATAAGTTGTATTTGTTGATTTTTTCCTTTTTGGCTGGATTTTATTTCAATAATACCATTTAAACTTTAAAAAATTAAGTTGAATATCCTTCAAACAAATGTTCAAAAATATCTATATACCATTAAGATTTGGATGTAAATTGTTATAATTGATATCACTTCTAAATTCAATAGTTCTACAAACATTTTAATAAATTACTCTTTCTTTGTCAATTAATTTTGAAATAGAATCTCATATTCTCTATTATTGTATCAAAGTTCAAAAAGGCTAAAACGGGTATGAAGAGATACCATCTTGAAGAGGACATGCAACATATAACAATTTAGAATTAACTATTCTCTGCCCGTTTAAAACACTAAAAATCACTTGTCAACATGAGTAGTTGCTCGGTGGCACATTATGTCTAATGACCAAAGAAGTCTTGGGTTCGAGTCCTCCTACCCACAATTGTTGTAATCTCAAAAAAAAAAAAACACTAAAAATCACCTTTTTTTTTTACTAGTTTGATTATAAATCTAATTTGTTGTTTAATAGGTTCATGAATTAAAAAAAATCAAATCAAATCGATTACCAACTCCTATACTTAAAATTGAAATTAAAGATTTATCGATCACAAGCTTGTTTAATGCTGGATCTAAGAACAACTTCTTGGAGTTTAGACGCATTAAATATGTAAAATGAAAGTTTAATAGACACTTTTTATGGTTGGATTTTTTTTTTTTTTTTTAAATTTAAATTCACGACTTCTTAATTATAATCTCATACTTATATTGGTTGAGTTATTGTTCTTGTTTGAAATCTTCTAAACATATTAAAACATGAGTTTTGTGTATAGAGATAATTAGAGCTTAAAATGTAACCATATTATATTATGAAAAATACAACAATACAATGTAGGGTAGGATACTTAAAATTTAACTTTATTATCTTTTGAGATAATTAGAATTTTTAAAATTATATATGGTTTATCTAAGAAAATACTGAAATATGAAAGATTCTTATTTATATAACTATCTGAAATCCTTTTCCGAACATAAAATGAGATAATTAAAAACAGAATTTGGTTCATTATCTAATTAGAAGATCATTAAGCATCCTACAAGAAAAGGGAAAAGCTCCAAACTACGTATAAATATGGAGCCAATCATTCTAAATAATTTAGAGAAATAACAAAACAAACAATTGTGTCAAATTTTGTGATCATAATGTCGTCGATTTGTTTAGAAGTTTTGGCAATGGAGGAAATTGATTATGATGATTGTTCTATAGACGCTGAAGAATGGGAAGTTCTTCAAAGACAGAGCGTTCCGCCGCATTCGTTAGCCGAAGAAGACGAAGCTAATCAAGATGTAATGAGTAGAGCTCGTAGCTATGAGTCTCCGGTGACCGGATTCTTCCGCAGATGGTGGCGGAGGATGGCGGGGCTGATGCTGTTCTTTGCAAGCAGAACCAATAGTAATAATGCAGAGAGAGAACACAGTGTTCTGACGAGGAGTAATATCAGAAATAAACAAAATTTTCAATTTTAG

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATCGATTCTGACGAGTGCGCTATGAATGCTCGAGAATGGGAAAGAAATGAAGCGGAGGGTGACGTTCCACCACATTTACTAGCCGAGGAAGACGAGGTTTTGGCAATGGAGGAAATTGATTATGATGATTGTTCTATAGACGCTGAAGAATGGGAAGTTCTTCAAAGACAGAGCGTTCCGCCGCATTCGTTAGCCGAAGAAGACGAAGCTAATCAAGATGTAATGAGTAGAGCTCGTAGCTATGAGTCTCCGGTGACCGGATTCTTCCGCAGATGGTGGCGGAGGATGGCGGGGCTGATGCTGTTCTTTGCAAGCAGAACCAATAGTAATAATGCAGAGAGAGAACACAGTGTTCTGACGAGGAGTAATATCAGAAATAAACAAAATTTTCAATTTTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATCGATTCTGACGAGTGCGCTATGAATGCTCGAGAATGGGAAAGAAATGAAGCGGAGGGTGACGTTCCACCACATTTACTAGCCGAGGAAGACGAGGTTTTGGCAATGGAGGAAATTGATTATGATGATTGTTCTATAGACGCTGAAGAATGGGAAGTTCTTCAAAGACAGAGCGTTCCGCCGCATTCGTTAGCCGAAGAAGACGAAGCTAATCAAGATGTAATGAGTAGAGCTCGTAGCTATGAGTCTCCGGTGACCGGATTCTTCCGCAGATGGTGGCGGAGGATGGCGGGGCTGATGCTGTTCTTTGCAAGCAGAACCAATAGTAATAATGCAGAGAGAGAACACAGTGTTCTGACGAGGAGTAATATCAGAAATAAACAAAATTTTCAATTTTAG

Protein sequence

MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDEVLAMEEIDYDDCSIDAEEWEVLQRQSVPPHSLAEEDEANQDVMSRARSYESPVTGFFRRWWRRMAGLMLFFASRTNSNNAEREHSVLTRSNIRNKQNFQF

Homology

[Close]

BLAST of Sed0011531 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 6.1e-09
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGIDS+E AM+A EWERNE E D+PPHLLA+ED+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDD 44

[Close]

BLAST of Sed0011531 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGI S+E AM+A EWERNE E DVPPHLLA+ED+
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDD 44

[Close]

BLAST of Sed0011531 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGI S+E AM+A EWERNE E DVPPHLLA+ED+
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDD 44

[Close]

BLAST of Sed0011531 vs. NCBI nr
Match: KAG6600647.1 (hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-08
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEED 44
          MSVSLEALAMAGIDS+E AM+A EWERNE E ++PPHLLA+ED
Sbjct: 1  MSVSLEALAMAGIDSNERAMDAEEWERNEMEKNIPPHLLADED 43

[Close]

BLAST of Sed0011531 vs. NCBI nr
Match: KAG7015382.1 (hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 6.8e-08
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEED 44
          MSVSLEALAMAGIDS+E AM+A+EWER+E   DVPPHLL EED
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEED 43

[Close]

BLAST of Sed0011531 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGIDS+E AM+A EWERNE E D+PPHLLA+ED+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDD 44

[Close]

BLAST of Sed0011531 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGIDS+E AM+A EWERNE +  VPPHLLA+E++
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEED 43

[Close]

BLAST of Sed0011531 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-06
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGIDS+E  M+A+EWERNE +  VPPHLLA+E++
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEED 43

[Close]

BLAST of Sed0011531 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-06
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDE 45
          MSVSLEALAMAGIDS+E  M+A+EWERNE +  VPPHLLA+E++
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEED 43

[Close]

BLAST of Sed0011531 vs. ExPASy TrEMBL
Match: A0A1Q3CWR7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSDECAMNAREWERNEAEGDVPPHLLAEEDEVL 47
          MSVSLEALAMAG+D +E  ++  EWER + E   PPHLLAEE+E++
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEEIV 46

The following BLAST results are available for this feature:

BLAST of Sed0011531 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943015.1	6.1e-09	79.55	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KAG7015383.1	1.8e-08	79.55	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	1.8e-08	79.55	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6600647.1	4.0e-08	79.07	hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015382.1	6.8e-08	79.07	hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0011531 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX98	3.0e-09	79.55	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KWE7	3.1e-06	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	6.8e-06	72.73	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	6.8e-06	72.73	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1Q3CWR7	4.4e-05	60.87	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4...	[more]

BLAST of Sed0011531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011531.1	Sed0011531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane