Sed0011524 (gene) Chayote v1

Overview


Name	Sed0011524
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNase H domain-containing protein
Location	LG13: 22836213 .. 22837410 (-)
RNA-Seq Expression	Sed0011524
Synteny	Sed0011524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCGTATACTTGGAAGAGTATATTGTGGGGACGAGAGCTATTGCCGAAAGGCATTAGGTGGCGAATCAGTAATGGGAAAAATGTTAAAATTCTTTCAGATAATTGACTTTGTCGTGTTCCATCTATGAGGCCAATCATTACAACAGACATTGATCCAAATTTGAGGGTTAGTTCTTTAATATTGTCAAATGGAAATTGGGATGTTGAAAAAATTAATTTAATGTTTGGGAAGGACGATGCGAGTTTAATCAAGCAACTTCCTCGACGGAGATGGAATGGAAGTGATGTGCTACTCTGGAATTATGAGAAGAATGAAATTTTCACAGTTAAATCGGCGCATTGGCTTGCAAATTTGCTTCGTAGTGGTCCTTCATGTTCTAATAGCGAATTGATTGAACAATGGTGAATGCGTTGTGGAGGTGAAAATTACCAAATAAAGTAAAATTTTTGGCTGGGTCGTATCTTTAATAATTTTGTCCCTACTATAGTGAATCTCAATAAACGTGGAATTGTGAATGATGTGTTGTGTCCTCTTTGTAAAAAATTTCCAGAGACTATTTTACATGCAATTTGGCAATGTAAAAAAGTGAAGTTTAATTGGGAGGAAAACCCATTCTTTACTTTTGATCCCTTGTTAATTATTTAAATGAGGCTACTAATTTGATTGGATGGTTCTTTGAAAAATTGCCAATTACAAAATTTTAATTGGGAGTATTGTTGTCAGTTTTTTAGTTCATGCAAGGCAAAGTGAGTTTGTGTGACGGAGTTACAAATCACAGTGAGTCTTCTCTACGTCAGAATTTTTGGTCCCCTCCAAGAAGTGAAAACTATAAATTAAATACGAATACTGCTATAAATTTAGAGGAAGGAAGAAGTGGATATGGGGCTATTATTCGAAATTACAAGGGTGAGGTAATCTTCTCAATGTGTCAATCGATCGAGTGGATTGTTAATCCAGAAATTGTGGAAGCGTTAGCTATTATAGAAGGAGTGGAAATGGCCTTTGAATTTGGTTTCCAACATATTGAGGTGGAGTCTGATACCTTGCGTATGATTAATTTGTTACAAAAATATTGCAAGAATCAGACAGAGGTTGGAGGAATCATTGAAGGAACACTGCAAATGGCAAGAAATTTCAAGTTTATCTCTTTCACATGGTGTAATCGGGAGACAAATATTCTTGCCATAAACTAG

mRNA sequence

ATGTTTCGTATACTTGGAAGAGTATATTGTGGGGACGAGAGCTATTGCCGAAAGGCATTAGGTGGCGAATCAGTAATGGGAAAAATTGAAAACTATAAATTAAATACGAATACTGCTATAAATTTAGAGGAAGGAAGAAGTGGATATGGGGCTATTATTCGAAATTACAAGGGTGAGGTAATCTTCTCAATGTGTCAATCGATCGAGTGGATTGTTAATCCAGAAATTGTGGAAGCGTTAGCTATTATAGAAGGAGTGGAAATGGCCTTTGAATTTGGTTTCCAACATATTGAGGTGGAGTCTGATACCTTGCGTATGATTAATTTGTTACAAAAATATTGCAAGAATCAGACAGAGGTTGGAGGAATCATTGAAGGAACACTGCAAATGGCAAGAAATTTCAAGTTTATCTCTTTCACATGGTGTAATCGGGAGACAAATATTCTTGCCATAAACTAG

Coding sequence (CDS)

ATGTTTCGTATACTTGGAAGAGTATATTGTGGGGACGAGAGCTATTGCCGAAAGGCATTAGGTGGCGAATCAGTAATGGGAAAAATTGAAAACTATAAATTAAATACGAATACTGCTATAAATTTAGAGGAAGGAAGAAGTGGATATGGGGCTATTATTCGAAATTACAAGGGTGAGGTAATCTTCTCAATGTGTCAATCGATCGAGTGGATTGTTAATCCAGAAATTGTGGAAGCGTTAGCTATTATAGAAGGAGTGGAAATGGCCTTTGAATTTGGTTTCCAACATATTGAGGTGGAGTCTGATACCTTGCGTATGATTAATTTGTTACAAAAATATTGCAAGAATCAGACAGAGGTTGGAGGAATCATTGAAGGAACACTGCAAATGGCAAGAAATTTCAAGTTTATCTCTTTCACATGGTGTAATCGGGAGACAAATATTCTTGCCATAAACTAG

Protein sequence

MFRILGRVYCGDESYCRKALGGESVMGKIENYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILAIN

Homology

[Close]

BLAST of Sed0011524 vs. NCBI nr
Match: TXG47194.1 (hypothetical protein EZV62_026488 [Acer yangbiense])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 44/122 (36.07%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 32  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFE 91
           +K+NT+ A+N++   +G G +IRN++G+V+ S C++     +P I EALA++EG+ +A  
Sbjct: 89  FKINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKL 148

Query: 92  FGFQHIEVESDTLRMINLLQKYCKNQ---TEVGGIIEGTLQMARNFKFISFTWCNRETNI 151
            GF    +ESD L ++   Q  C+N+   ++VG +I+  L   R+F F SF    R  N 
Sbjct: 149 GGFFPTVLESDALTVV---QDICRNESLSSDVGLVIDDILFFCRDFNFFSFRHVPRLANK 207

[Close]

BLAST of Sed0011524 vs. NCBI nr
Match: TXG69190.1 (hypothetical protein EZV62_004125 [Acer yangbiense])

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-12
Identity = 40/120 (33.33%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 31  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAF 90
           +YK+NT+  ++     +G G +IR+  G V+ S+CQS   ++ P+ VEA+A++ G  +A 
Sbjct: 709 SYKINTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVAVLRGFRLAL 768

Query: 91  EFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILA 150
           E G     +ESD+L ++NL+      + E+G ++   L M  N  F S ++  R TN +A
Sbjct: 769 EAGLCPASIESDSLSVVNLINSMDILRAEIGVVLHDILAMGSNSFFSSVSFVPRLTNCVA 828

[Close]

BLAST of Sed0011524 vs. NCBI nr
Match: TXG48983.1 (hypothetical protein EZV62_024858 [Acer yangbiense])

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-12
Identity = 37/113 (32.74%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 32  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFE 91
           +K+NT+ A++++E   G   +IRN++G+V+ S C++ +   +P+I EALA++EG+ +A  
Sbjct: 2   FKINTDAALDIQENYVGIAVVIRNFQGKVMLSFCKNFQACYSPQIAEALAVVEGLRLAKN 61

Query: 92  FGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNR 145
            GF    +ESD L ++  +       +EVG +++  L   R   F SF++  R
Sbjct: 62  GGFFPAVLESDALMVVRDICNKVSLSSEVGLVLDDILHFCRESNFFSFSYVPR 114

[Close]

BLAST of Sed0011524 vs. NCBI nr
Match: KAF7819670.1 (uncharacterized protein G2W53_025125 [Senna tora])

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-12
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 34  LNTNTAINLEEGR-SGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEF 93
           L  N   ++ EG  S  G IIRN+ G  + +M +  E     + +EALA+ EG+ +A   
Sbjct: 93  LKLNVDASMREGMPSRVGCIIRNHTGRCLVAMTKRFEVATTVDTLEALAVYEGLMLAKSM 152

Query: 94  GFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILA 151
              +IEVE D+ ++  LL K   +Q+ +G IIE  L+++  F F+SF W  RETN LA
Sbjct: 153 SILNIEVEGDSAKVFKLLNKKGTDQSYLGIIIEDILELSSFFNFVSFKWIRRETNKLA 210

[Close]

BLAST of Sed0011524 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-11
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 31  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAF 90
           ++KLNTN A   +    G G I+R+ KGEVI + C+ I    N   +E +AI EG+    
Sbjct: 86  SWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIR 145

Query: 91  EFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILA 150
           +   + I +ESD+L  I+LL + C++QTE+  ++E   QM ++ + +S    +RE N +A
Sbjct: 146 QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVA 205

[Close]

BLAST of Sed0011524 vs. ExPASy TrEMBL
Match: A0A5C7GQX3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 44/122 (36.07%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 32  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFE 91
           +K+NT+ A+N++   +G G +IRN++G+V+ S C++     +P I EALA++EG+ +A  
Sbjct: 89  FKINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKL 148

Query: 92  FGFQHIEVESDTLRMINLLQKYCKNQ---TEVGGIIEGTLQMARNFKFISFTWCNRETNI 151
            GF    +ESD L ++   Q  C+N+   ++VG +I+  L   R+F F SF    R  N 
Sbjct: 149 GGFFPTVLESDALTVV---QDICRNESLSSDVGLVIDDILFFCRDFNFFSFRHVPRLANK 207

[Close]

BLAST of Sed0011524 vs. ExPASy TrEMBL
Match: A0A5C7IIT4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 40/120 (33.33%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 31  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAF 90
           +YK+NT+  ++     +G G +IR+  G V+ S+CQS   ++ P+ VEA+A++ G  +A 
Sbjct: 709 SYKINTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVAVLRGFRLAL 768

Query: 91  EFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILA 150
           E G     +ESD+L ++NL+      + E+G ++   L M  N  F S ++  R TN +A
Sbjct: 769 EAGLCPASIESDSLSVVNLINSMDILRAEIGVVLHDILAMGSNSFFSSVSFVPRLTNCVA 828

[Close]

BLAST of Sed0011524 vs. ExPASy TrEMBL
Match: A0A5C7GW84 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024858 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 37/113 (32.74%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 32  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFE 91
           +K+NT+ A++++E   G   +IRN++G+V+ S C++ +   +P+I EALA++EG+ +A  
Sbjct: 2   FKINTDAALDIQENYVGIAVVIRNFQGKVMLSFCKNFQACYSPQIAEALAVVEGLRLAKN 61

Query: 92  FGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNR 145
            GF    +ESD L ++  +       +EVG +++  L   R   F SF++  R
Sbjct: 62  GGFFPAVLESDALMVVRDICNKVSLSSEVGLVLDDILHFCRESNFFSFSYVPR 114

[Close]

BLAST of Sed0011524 vs. ExPASy TrEMBL
Match: A0A2N9E9A1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3428 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 32   YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFE 91
            YK+N + A+  E   +G GAI+RN++GEV+ ++CQ I +  + E VEA A    V    +
Sbjct: 1634 YKVNFDGAVFRESNEAGIGAIVRNHRGEVMAALCQRIPYPYSIEAVEASAAKAAVTFVLD 1693

Query: 92   FGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILA 151
             G Q +++E D+L++I  LQ+     T  G +I  T  +A+N     F    R+ N +A
Sbjct: 1694 LGIQEVDIEGDSLKIITALQQISPCYTSYGHLILDTNTLAQNLTSYQFMHVKRDGNSVA 1752

[Close]

BLAST of Sed0011524 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 31  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAF 90
           ++KLNTN A   +    G G I+R+ KGEVI + C+ I    N   +E +AI EG+    
Sbjct: 86  SWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIR 145

Query: 91  EFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILA 150
           +   + I +ESD+L  I+LL + C++QTE+  ++E   QM ++ + +S    +RE N +A
Sbjct: 146 QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVA 205

The following BLAST results are available for this feature:

BLAST of Sed0011524 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG47194.1	9.6e-13	36.07	hypothetical protein EZV62_026488 [Acer yangbiense]	[more]
TXG69190.1	6.2e-12	33.33	hypothetical protein EZV62_004125 [Acer yangbiense]	[more]
TXG48983.1	8.1e-12	32.74	hypothetical protein EZV62_024858 [Acer yangbiense]	[more]
KAF7819670.1	8.1e-12	38.14	uncharacterized protein G2W53_025125 [Senna tora]	[more]
XP_022143535.1	5.3e-11	35.83	uncharacterized protein LOC111013412 [Momordica charantia]	[more]

BLAST of Sed0011524 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GQX3	4.7e-13	36.07	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 ...	[more]
A0A5C7IIT4	3.0e-12	33.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1	[more]
A0A5C7GW84	3.9e-12	32.74	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024858 ...	[more]
A0A2N9E9A1	2.0e-11	34.45	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A6J1CP26	2.6e-11	35.83	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Sed0011524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 35..150 e-value: 4.5E-21 score: 74.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 31..152 e-value: 9.1E-12 score: 47.1
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 30..150
None	No IPR available	PANTHER	PTHR47074:SF25	SUBFAMILY NOT NAMED	coord: 30..150
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 34..150 e-value: 2.95605E-19 score: 76.1988
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 31..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011524.1	Sed0011524.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity