Sed0011511 (gene) Chayote v1

Overview


Name	Sed0011511
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nucleolin 1
Location	LG06: 445000 .. 447120 (+)
RNA-Seq Expression	Sed0011511
Synteny	Sed0011511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGGTGTCCGAAATTTCTGCTTCCGAAATTTTCTCAGCCGCATTAATCAATGGAGATCACCGGAGACGACGGTTCAAAGCTAATTCTAAGAGAATCAGTGACGATAATCGGAAGAGGCTCAGGTTTTGCTTCAAAAGATCGAACAATATCTCGTCGTCACCTTTTGATCGAAGCCAAAACCTCCGAGAACAGTGATGGAGCTTTCACAGAACCTAGGGTTTCCTTCGAGGTCTTCGGCTGCAACCCTATTTGGGTTCGGAGCGCCAAAAATGGCGAAATCAGAGCGTTTAGAAGATCGGAGAAGGGCGAGATGGCGCCTGGTGAATCCTTCTGCGTGGGCGGCCAGGAACCGATCTGGTTCGAATTGAACGAAATGGCTGAATTCGAAGAAGGGGAGCAAATTGGTGAGGAATTCGAGAACGATTTTGCTACGCGTTCTTCGGATTTGGAGGATATCGATGTTTCTGGCATTGATCCTCTCAAAGGTTTGCTCCTGAAAATCTTTCTAGTTTTCCCGATTTTTTGTTTAGATCAAAGTAGTTGAAATCATCAATTAATTTTGTGAATAGCCGATACTCAAATTGCATTTAGAAATTTCAAATTGCGAATCGATGATACTGTTCTTACTGCTCCCTAGTCAGAATTTAGTTTTATTATCAGTGCTATAGCCTGAAGAAAGAAAGTTAGAATTTAATTATTATGATGTTTGGAAGAAATATTGAAATTAGTCACTATGTTTTTTAAAACTAAAATTTAGTCTCTACAATTTAATAAAACATACAAATTAGTCCTTTTTTCTAATCATCGATGAATAAGTGCTTGAAAATTAGTTATTCACGTGTCAATGATGAAATAATGAGTTAAGTGATTAATTTATGCATGAATAATGGGTTTCTATTTATTTAATGTTATGTACGACAAACACTGTATTTTAGATTTTATAAAATGATAGAGATTAAATTCTAATTTTTAAAACCATTAGATTAAATTCTAACTTTCTTATGATCACAACGATTGAATTTTAACTTTTTTTCAAATTATAGGAACTAAATTTTAATTTTTGAAATTATGAGTATCGACTGAACTCTAATTTTTTTCAAACCATGGGGTCTAAACTTATAATATACTGGCATTAGTTAGAATGCTGTCAAAGATTTTCTCCTGAAAATCTTTCAAGTTTTCTCGAGAAAATTGAAAGGAAAATAATCGAAATCATCACTTCTTAAATTGTTTACAAATTCTGAAACAGAAGTAGTAGATACTGAAGTGAACAAACGGCAAATTTGTTTTAGTAGTTCCAAATTTTGAATCGATGATACTGATTGTTCTTACTGTTTCCTTGTCAGAATTCGGTTTTCTTGTTATGGGACACGAGTTTGAATGCTATGGAAATCGAGTGATTCGTGATGCGAAAAAGTGGGACTGGTTTTTGGATGAGGGGAGAAAAGACAGTGATGATGATGAAGATTATGGGAGGAAAAAGAAGAGAGGAGTAAGAGGAAAGAGGAAGAAAGGAACAAACAGTGAGGATGAAGATTGGACAGATGAGAATGAAGATGATGTGGAAATGATTGCCAAAACAAAAAAGTTTCAAAGACCCAAATACTCCACAAGATCGAAAGACCGCCATAAAATTCAGCAGGATCAAAAGAAAGCTGCTAAATCCAATAATGACTCCGATGAAGAAGATGAGGATGAAGACGAAGACGAAGACGAAGAAACTTTAGGAGGTTTTATTGTTACTGATGAAGTAGATACTGAAGAACAGATGGATCAAGATGACGAAGAAGAAGAAGAACTTTTGGACGATGACGAAGAGGAGGAAGATTGATGGGGCTAATGGCTTTGGTTGTTGGCTTCTGCTAACTTAGGCTTGTTATAGAGAGGTTTGTCTTTGTATATTACTTACCTTTTTAGTTTCATAATCTTGTGAAATATAGAAGAAGGATCAGTTTTATGCTGTATTTCTATTTCAATTTTTTGATTGAAAATGCTCTTCAGTTTCTTCTCCATTTAAAAAAAAAATTATTTAAAATGTTGACAATTTTGATAACCTTCCTGTAATTTTGTTTTGTCTCTTGTTCTATGACTGATCAACTCATCTCATTTACAGACCTTTG

mRNA sequence

GTCGGTGTCCGAAATTTCTGCTTCCGAAATTTTCTCAGCCGCATTAATCAATGGAGATCACCGGAGACGACGGTTCAAAGCTAATTCTAAGAGAATCAGTGACGATAATCGGAAGAGGCTCAGGTTTTGCTTCAAAAGATCGAACAATATCTCGTCGTCACCTTTTGATCGAAGCCAAAACCTCCGAGAACAGTGATGGAGCTTTCACAGAACCTAGGGTTTCCTTCGAGGTCTTCGGCTGCAACCCTATTTGGGTTCGGAGCGCCAAAAATGGCGAAATCAGAGCGTTTAGAAGATCGGAGAAGGGCGAGATGGCGCCTGGTGAATCCTTCTGCGTGGGCGGCCAGGAACCGATCTGGTTCGAATTGAACGAAATGGCTGAATTCGAAGAAGGGGAGCAAATTGGTGAGGAATTCGAGAACGATTTTGCTACGCGTTCTTCGGATTTGGAGGATATCGATGTTTCTGGCATTGATCCTCTCAAAGAATTCGGTTTTCTTGTTATGGGACACGAGTTTGAATGCTATGGAAATCGAGTGATTCGTGATGCGAAAAAGTGGGACTGGTTTTTGGATGAGGGGAGAAAAGACAGTGATGATGATGAAGATTATGGGAGGAAAAAGAAGAGAGGAGTAAGAGGAAAGAGGAAGAAAGGAACAAACAGTGAGGATGAAGATTGGACAGATGAGAATGAAGATGATGTGGAAATGATTGCCAAAACAAAAAAGTTTCAAAGACCCAAATACTCCACAAGATCGAAAGACCGCCATAAAATTCAGCAGGATCAAAAGAAAGCTGCTAAATCCAATAATGACTCCGATGAAGAAGATGAGGATGAAGACGAAGACGAAGACGAAGAAACTTTAGGAGGTTTTATTGTTACTGATGAAGTAGATACTGAAGAACAGATGGATCAAGATGACGAAGAAGAAGAAGAACTTTTGGACGATGACGAAGAGGAGGAAGATTGATGGGGCTAATGGCTTTGGTTGTTGGCTTCTGCTAACTTAGGCTTGTTATAGAGAGGTTTGTCTTTGTATATTACTTACCTTTTTAGTTTCATAATCTTGTGAAATATAGAAGAAGGATCAGTTTTATGCTGTATTTCTATTTCAATTTTTTGATTGAAAATGCTCTTCAGTTTCTTCTCCATTTAAAAAAAAAATTATTTAAAATGTTGACAATTTTGATAACCTTCCTGTAATTTTGTTTTGTCTCTTGTTCTATGACTGATCAACTCATCTCATTTACAGACCTTTG

Coding sequence (CDS)

ATGGAGATCACCGGAGACGACGGTTCAAAGCTAATTCTAAGAGAATCAGTGACGATAATCGGAAGAGGCTCAGGTTTTGCTTCAAAAGATCGAACAATATCTCGTCGTCACCTTTTGATCGAAGCCAAAACCTCCGAGAACAGTGATGGAGCTTTCACAGAACCTAGGGTTTCCTTCGAGGTCTTCGGCTGCAACCCTATTTGGGTTCGGAGCGCCAAAAATGGCGAAATCAGAGCGTTTAGAAGATCGGAGAAGGGCGAGATGGCGCCTGGTGAATCCTTCTGCGTGGGCGGCCAGGAACCGATCTGGTTCGAATTGAACGAAATGGCTGAATTCGAAGAAGGGGAGCAAATTGGTGAGGAATTCGAGAACGATTTTGCTACGCGTTCTTCGGATTTGGAGGATATCGATGTTTCTGGCATTGATCCTCTCAAAGAATTCGGTTTTCTTGTTATGGGACACGAGTTTGAATGCTATGGAAATCGAGTGATTCGTGATGCGAAAAAGTGGGACTGGTTTTTGGATGAGGGGAGAAAAGACAGTGATGATGATGAAGATTATGGGAGGAAAAAGAAGAGAGGAGTAAGAGGAAAGAGGAAGAAAGGAACAAACAGTGAGGATGAAGATTGGACAGATGAGAATGAAGATGATGTGGAAATGATTGCCAAAACAAAAAAGTTTCAAAGACCCAAATACTCCACAAGATCGAAAGACCGCCATAAAATTCAGCAGGATCAAAAGAAAGCTGCTAAATCCAATAATGACTCCGATGAAGAAGATGAGGATGAAGACGAAGACGAAGACGAAGAAACTTTAGGAGGTTTTATTGTTACTGATGAAGTAGATACTGAAGAACAGATGGATCAAGATGACGAAGAAGAAGAAGAACTTTTGGACGATGACGAAGAGGAGGAAGATTGA

Protein sequence

MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFEVFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGEEFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKDSDDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDRHKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLDDDEEEED

Homology

[Close]

BLAST of Sed0011511 vs. NCBI nr
Match: XP_038898830.1 (protein PIF [Benincasa hispida])

HSP 1 Score: 442.6 bits (1137), Expect = 2.8e-120
Identity = 242/307 (78.83%), Postives = 260/307 (84.69%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKL+LRE VTI GRGSGFASKDRT+SRRH+LIEAKTSENS+GA  EP VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTVSRRHILIEAKTSENSNGAPIEPTVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR FRRSEKGEMA GESFCVG QEPIWFELN++AEFEE +Q   
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGEMALGESFCVGSQEPIWFELNKIAEFEERKQ--- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                F +RSSD  DIDVSGIDP+KEFGFL MGHEFECYGNRVIRD KKWDWFLDE RKD
Sbjct: 121 -----FFSRSSDSVDIDVSGIDPVKEFGFLAMGHEFECYGNRVIRDPKKWDWFLDEPRKD 180

Query: 181 SDDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDRH 240
           SDDDEDYGRKKKRGV+GKRKKG NS+DEDWTDENED VEMI KTKKF+RPKYSTRSKDRH
Sbjct: 181 SDDDEDYGRKKKRGVKGKRKKGANSDDEDWTDENEDAVEMITKTKKFRRPKYSTRSKDRH 240

Query: 241 KIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQD---DEEEEEL 300
           K   DQKKAA+SN D DEE E   EDED+ETLGGFIV DE D  EQMD+D   DEEEEE 
Sbjct: 241 KTPNDQKKAARSNKDYDEEVE---EDEDDETLGGFIVDDEEDNVEQMDEDEDEDEEEEEF 296

Query: 301 LDDDEEE 305
            DDDEE+
Sbjct: 301 SDDDEED 296

[Close]

BLAST of Sed0011511 vs. NCBI nr
Match: XP_022152655.1 (protein bfr2 [Momordica charantia])

HSP 1 Score: 441.0 bits (1133), Expect = 8.2e-120
Identity = 239/309 (77.35%), Postives = 262/309 (84.79%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKL++ E VTI GRGSGFASKDRT+SRRHLLIEAKTSEN DGA  EP +SFE
Sbjct: 1   MEIAGEDGSKLVVGEPVTIFGRGSGFASKDRTVSRRHLLIEAKTSENCDGAPVEPWISFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS KNGEIR FRRSEKGE+APGESFCVGGQEP WF+LN++AE EEG++I  
Sbjct: 61  VIGRNPIWVRSGKNGEIRTFRRSEKGEIAPGESFCVGGQEPTWFKLNKIAEIEEGKRIVP 120

Query: 121 EFENDFA---TRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEG 180
           + E+ FA   TRSSD EDIDVSGIDP+KEFGFLVMGHEFECYGNRVIRDAKKWDWFLDE 
Sbjct: 121 KTEDQFAERLTRSSDSEDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEP 180

Query: 181 RKDSDDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSK 240
           RK SDDDEDYGR+K+RGVRGKRKKG NS+DEDWTDENED VEMIAK KK QRPKYSTRSK
Sbjct: 181 RKGSDDDEDYGRRKRRGVRGKRKKGANSDDEDWTDENEDAVEMIAKAKKVQRPKYSTRSK 240

Query: 241 DRHKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEEL 300
           D +K  +DQ KAA SN D DE      EDED+ETLGGFIV DEVD EEQMD+D  EEEE 
Sbjct: 241 DHNKTNKDQNKAANSNKDYDE------EDEDDETLGGFIVDDEVDNEEQMDED--EEEEF 300

Query: 301 LDDDEEEED 307
            DDD+E+ED
Sbjct: 301 SDDDDEDED 301

[Close]

BLAST of Sed0011511 vs. NCBI nr
Match: XP_004146848.1 (nucleolin 1 [Cucumis sativus] >KGN59809.1 hypothetical protein Csa_000774 [Cucumis sativus])

HSP 1 Score: 433.7 bits (1114), Expect = 1.3e-117
Identity = 239/307 (77.85%), Postives = 265/307 (86.32%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEITG+DGSKL+LRE VT+ GRGSGFASKDRTISRRH+LIEAKTSEN++GA  EP+VSFE
Sbjct: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR F+RSEKGEMAPGESFCVGGQEPIWFELN++AEFEEG+Q+  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                  +RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------FSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 SDDD-EDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           SDDD EDY RKKKRGV GKRKKGTNS+DEDWTDENED VEMI K +K QRPKYSTRSKDR
Sbjct: 181 SDDDNEDYERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN + + E E   EDED+ETLGGFIV DEVD  EQMD +DEEEEE LD
Sbjct: 241 NKISNDQRKAAKSNKNYNGEVE---EDEDDETLGGFIVDDEVDNVEQMD-EDEEEEEFLD 295

Query: 301 DDEEEED 307
           D+E+EED
Sbjct: 301 DEEDEED 295

[Close]

BLAST of Sed0011511 vs. NCBI nr
Match: KAA0036698.1 (nucleolin 1 [Cucumis melo var. makuwa])

HSP 1 Score: 429.9 bits (1104), Expect = 1.9e-116
Identity = 236/307 (76.87%), Postives = 262/307 (85.34%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKLILRE VTI GRGSGFASKDRTISRRH+LIEAKTS+N++GA  EP+VSFE
Sbjct: 1   MEIAGEDGSKLILREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR FRRSEKG+MAPGESFCVGGQEPIWFELN++ EFEEG+ +  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                 ++RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------SSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 S-DDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           S DDDEDY RKKKRGVRGKRKKG NS+DEDWTDENED V+MI K +K QRPKYSTRSKDR
Sbjct: 181 SHDDDEDYERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN D D E E   EDED+ETLGGFIV DEVD  EQMD+D  EEEE LD
Sbjct: 241 NKISNDQRKAAKSNKDYDGEVE---EDEDDETLGGFIVDDEVDNVEQMDED--EEEEFLD 294

Query: 301 DDEEEED 307
           D+++EED
Sbjct: 301 DEDDEED 294

[Close]

BLAST of Sed0011511 vs. NCBI nr
Match: XP_008447630.1 (PREDICTED: nucleolin 1 [Cucumis melo] >TYK03672.1 nucleolin 1 [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 2.5e-116
Identity = 235/307 (76.55%), Postives = 262/307 (85.34%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKL+LRE VTI GRGSGFASKDRTISRRH+LIEAKTS+N++GA  EP+VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR FRRSEKG+MAPGESFCVGGQEPIWFELN++ EFEEG+ +  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                 ++RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------SSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 S-DDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           S DDDEDY RKKKRGVRGKRKKG NS+DEDWTDENED V+MI K +K QRPKYSTRSKDR
Sbjct: 181 SHDDDEDYERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN D D E E   EDED+ETLGGFIV DEVD  EQMD+D  EEEE LD
Sbjct: 241 NKISNDQRKAAKSNKDYDGEVE---EDEDDETLGGFIVDDEVDNVEQMDED--EEEEFLD 294

Query: 301 DDEEEED 307
           D+++EED
Sbjct: 301 DEDDEED 294

[Close]

BLAST of Sed0011511 vs. ExPASy TrEMBL
Match: A0A6J1DEJ6 (protein bfr2 OS=Momordica charantia OX=3673 GN=LOC111020320 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.9e-120
Identity = 239/309 (77.35%), Postives = 262/309 (84.79%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKL++ E VTI GRGSGFASKDRT+SRRHLLIEAKTSEN DGA  EP +SFE
Sbjct: 1   MEIAGEDGSKLVVGEPVTIFGRGSGFASKDRTVSRRHLLIEAKTSENCDGAPVEPWISFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS KNGEIR FRRSEKGE+APGESFCVGGQEP WF+LN++AE EEG++I  
Sbjct: 61  VIGRNPIWVRSGKNGEIRTFRRSEKGEIAPGESFCVGGQEPTWFKLNKIAEIEEGKRIVP 120

Query: 121 EFENDFA---TRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEG 180
           + E+ FA   TRSSD EDIDVSGIDP+KEFGFLVMGHEFECYGNRVIRDAKKWDWFLDE 
Sbjct: 121 KTEDQFAERLTRSSDSEDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEP 180

Query: 181 RKDSDDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSK 240
           RK SDDDEDYGR+K+RGVRGKRKKG NS+DEDWTDENED VEMIAK KK QRPKYSTRSK
Sbjct: 181 RKGSDDDEDYGRRKRRGVRGKRKKGANSDDEDWTDENEDAVEMIAKAKKVQRPKYSTRSK 240

Query: 241 DRHKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEEL 300
           D +K  +DQ KAA SN D DE      EDED+ETLGGFIV DEVD EEQMD+D  EEEE 
Sbjct: 241 DHNKTNKDQNKAANSNKDYDE------EDEDDETLGGFIVDDEVDNEEQMDED--EEEEF 300

Query: 301 LDDDEEEED 307
            DDD+E+ED
Sbjct: 301 SDDDDEDED 301

[Close]

BLAST of Sed0011511 vs. ExPASy TrEMBL
Match: A0A0A0LFR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848190 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 6.3e-118
Identity = 239/307 (77.85%), Postives = 265/307 (86.32%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEITG+DGSKL+LRE VT+ GRGSGFASKDRTISRRH+LIEAKTSEN++GA  EP+VSFE
Sbjct: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR F+RSEKGEMAPGESFCVGGQEPIWFELN++AEFEEG+Q+  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                  +RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------FSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 SDDD-EDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           SDDD EDY RKKKRGV GKRKKGTNS+DEDWTDENED VEMI K +K QRPKYSTRSKDR
Sbjct: 181 SDDDNEDYERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN + + E E   EDED+ETLGGFIV DEVD  EQMD +DEEEEE LD
Sbjct: 241 NKISNDQRKAAKSNKNYNGEVE---EDEDDETLGGFIVDDEVDNVEQMD-EDEEEEEFLD 295

Query: 301 DDEEEED 307
           D+E+EED
Sbjct: 301 DEEDEED 295

[Close]

BLAST of Sed0011511 vs. ExPASy TrEMBL
Match: A0A5A7T1L8 (Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00450 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 9.1e-117
Identity = 236/307 (76.87%), Postives = 262/307 (85.34%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKLILRE VTI GRGSGFASKDRTISRRH+LIEAKTS+N++GA  EP+VSFE
Sbjct: 1   MEIAGEDGSKLILREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR FRRSEKG+MAPGESFCVGGQEPIWFELN++ EFEEG+ +  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                 ++RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------SSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 S-DDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           S DDDEDY RKKKRGVRGKRKKG NS+DEDWTDENED V+MI K +K QRPKYSTRSKDR
Sbjct: 181 SHDDDEDYERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN D D E E   EDED+ETLGGFIV DEVD  EQMD+D  EEEE LD
Sbjct: 241 NKISNDQRKAAKSNKDYDGEVE---EDEDDETLGGFIVDDEVDNVEQMDED--EEEEFLD 294

Query: 301 DDEEEED 307
           D+++EED
Sbjct: 301 DEDDEED 294

[Close]

BLAST of Sed0011511 vs. ExPASy TrEMBL
Match: A0A5D3BXV5 (Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00290 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.2e-116
Identity = 235/307 (76.55%), Postives = 262/307 (85.34%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKL+LRE VTI GRGSGFASKDRTISRRH+LIEAKTS+N++GA  EP+VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR FRRSEKG+MAPGESFCVGGQEPIWFELN++ EFEEG+ +  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                 ++RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------SSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 S-DDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           S DDDEDY RKKKRGVRGKRKKG NS+DEDWTDENED V+MI K +K QRPKYSTRSKDR
Sbjct: 181 SHDDDEDYERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN D D E E   EDED+ETLGGFIV DEVD  EQMD+D  EEEE LD
Sbjct: 241 NKISNDQRKAAKSNKDYDGEVE---EDEDDETLGGFIVDDEVDNVEQMDED--EEEEFLD 294

Query: 301 DDEEEED 307
           D+++EED
Sbjct: 301 DEDDEED 294

[Close]

BLAST of Sed0011511 vs. ExPASy TrEMBL
Match: A0A1S3BHB4 (nucleolin 1 OS=Cucumis melo OX=3656 GN=LOC103490042 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.2e-116
Identity = 235/307 (76.55%), Postives = 262/307 (85.34%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESVTIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEPRVSFE 60
           MEI G+DGSKL+LRE VTI GRGSGFASKDRTISRRH+LIEAKTS+N++GA  EP+VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VFGCNPIWVRSAKNGEIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGEQIGE 120
           V G NPIWVRS+KNGEIR FRRSEKG+MAPGESFCVGGQEPIWFELN++ EFEEG+ +  
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLV-- 120

Query: 121 EFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDEGRKD 180
                 ++RSSD +DIDVSGIDP+KEFGFLVMGHEFECYGNRVIRD KKWDWFLD   KD
Sbjct: 121 ------SSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKD 180

Query: 181 S-DDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTRSKDR 240
           S DDDEDY RKKKRGVRGKRKKG NS+DEDWTDENED V+MI K +K QRPKYSTRSKDR
Sbjct: 181 SHDDDEDYERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDR 240

Query: 241 HKIQQDQKKAAKSNNDSDEEDEDEDEDEDEETLGGFIVTDEVDTEEQMDQDDEEEEELLD 300
           +KI  DQ+KAAKSN D D E E   EDED+ETLGGFIV DEVD  EQMD+D  EEEE LD
Sbjct: 241 NKISNDQRKAAKSNKDYDGEVE---EDEDDETLGGFIVDDEVDNVEQMDED--EEEEFLD 294

Query: 301 DDEEEED 307
           D+++EED
Sbjct: 301 DEDDEED 294

[Close]

BLAST of Sed0011511 vs. TAIR 10
Match: AT3G13780.1 (SMAD/FHA domain-containing protein )

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-50
Identity = 133/315 (42.22%), Postives = 203/315 (64.44%), Query Frame = 0


Query: 1   MEITGDDGSKLILRESV-TIIGRGSGFASKDRTISRRHLLIEAKTSENSDGAFTEP--RV 60
           MEI G+DG+KL L+  V  + GRG+GF ++D T+SRRH+ +  K +     A TEP   V
Sbjct: 14  MEIEGEDGTKLFLKTGVKDVFGRGAGFNTEDLTVSRRHVSLVFKPA----AAGTEPSDMV 73

Query: 61  SFEVFGCNPIWVRSAKNG-EIRAFRRSEKGEMAPGESFCVGGQEPIWFELNEMAEFEEGE 120
           SFEV G NP+W+R+ + G +I+  R+ E GE+A G+ FCV G  PIWF L    E  E  
Sbjct: 74  SFEVLGRNPVWIRAVEKGKKIQTLRKPETGEIATGDQFCVSGNHPIWFTLKRRDEVME-- 133

Query: 121 QIGEEFENDFATRSSDLEDIDVSGIDPLKEFGFLVMGHEFECYGNRVIRDAKKWDWFLDE 180
                       R+ D  +I+++ IDP+KEFGFLV+G EF+ Y    +RD K+W+WFL++
Sbjct: 134 -----------ERALDHGEIELN-IDPVKEFGFLVIGKEFDQYPKSRVRDIKQWEWFLED 193

Query: 181 GRK-DSDDDEDYGRKKKRGVRGKRKKGTNSEDEDWTDENEDDVEMIAKTKKFQRPKYSTR 240
               +SD DED  +K ++G+  KR++   +ED+DW+ E+++D E++ K+K+   P YSTR
Sbjct: 194 STNGNSDGDEDGDKKGRKGLGKKRRRKKGNEDDDWSVESDEDKELMVKSKRVVTPTYSTR 253

Query: 241 SKDRHKIQQDQKKAAKSNNDSDEED----EDEDEDEDEETLGGFIVTDEVDTEEQMDQDD 300
           SK   K ++D   ++ S+N +  +     + E+ED+D+ETLGGFIV+DE   E ++++++
Sbjct: 254 SK---KTKKDSNASSSSSNGAQTKQRGRADVEEEDDDDETLGGFIVSDE---EAKLEEEE 304

Query: 301 EEEEELLDDDEEEED 307
           EEE+E   DDEE+ED
Sbjct: 314 EEEDESDVDDEEDED 304

The following BLAST results are available for this feature:

BLAST of Sed0011511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898830.1	2.8e-120	78.83	protein PIF [Benincasa hispida]	[more]
XP_022152655.1	8.2e-120	77.35	protein bfr2 [Momordica charantia]	[more]
XP_004146848.1	1.3e-117	77.85	nucleolin 1 [Cucumis sativus] >KGN59809.1 hypothetical protein Csa_000774 [Cucum...	[more]
KAA0036698.1	1.9e-116	76.87	nucleolin 1 [Cucumis melo var. makuwa]	[more]
XP_008447630.1	2.5e-116	76.55	PREDICTED: nucleolin 1 [Cucumis melo] >TYK03672.1 nucleolin 1 [Cucumis melo var....	[more]

BLAST of Sed0011511 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DEJ6	3.9e-120	77.35	protein bfr2 OS=Momordica charantia OX=3673 GN=LOC111020320 PE=4 SV=1	[more]
A0A0A0LFR7	6.3e-118	77.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848190 PE=4 SV=1	[more]
A0A5A7T1L8	9.1e-117	76.87	Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00450 PE...	[more]
A0A5D3BXV5	1.2e-116	76.55	Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00290 PE...	[more]
A0A1S3BHB4	1.2e-116	76.55	nucleolin 1 OS=Cucumis melo OX=3656 GN=LOC103490042 PE=4 SV=1	[more]

BLAST of Sed0011511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13780.1	1.1e-50	42.22	SMAD/FHA domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.200.20		coord: 3..110 e-value: 3.4E-12 score: 48.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..255
None	No IPR available	PANTHER	PTHR37733	SMAD/FHA DOMAIN-CONTAINING PROTEIN	coord: 1..305
IPR008984	SMAD/FHA domain superfamily	SUPERFAMILY	49879	SMAD/FHA domain	coord: 15..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011511.1	Sed0011511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding