Sed0011492 (gene) Chayote v1

Overview


Name	Sed0011492
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-CH-type domain-containing protein
Location	LG06: 37538726 .. 37540775 (+)
RNA-Seq Expression	Sed0011492
Synteny	Sed0011492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTATTTGTAAAAAGGAAGAAAAAAGAAGGAAGGAGTTTAGAGTGAGTTAGGTCTGGAAGGACGAAGAAACAACGATCAAATGGATGCTGAAGCGAAGCGAAAGGCATTGTTTCGTGCGAAATTGAACGCCCAGAAGAAGGATAAGCGCATCGATTCTCCTCTCCTAAGGTATATTCAGCTTCAAATTCCCATATACGGATTGTTCTTATCTATTTCTGTTTTGGATTTCAACCAAAGATTCTACTATCGTACACAAATCAACAAGTTTACTATATGCTCTAATTAGTCTTACATTGAGCTTAATGTTTGGTTGTGCTTTCATTTCTTGTAGTCCACTTTTTCTCATTTTTCTGTACACAAGGGTGTCATAGAAATGTTTCAAAATGGATCTCCAGCTGCGATTTAACCTACCCATATTCAAGAAGATTGTTCTGGACTTTTTTTGTTGTTTGTGTTTTTTTTTTTTTGAAACAAGGGTAACAACGCCCGTCCCTAGGCCAGGCTATGAAGCATGGACACACAGATATGACACAACACGGCGATACGTCAATTTCTTAAAATCTAAGATACGGATACATTTGAGATACGACAATTTTACTAAAATAAAATCTAGAAATCATTGTTATAGAATTGTTTTCGATTCCTATAAAAAAAAAGATTAAAGGATTGAGTTCAAAAGTTGATGAATAAAATCTTATTGAACTTCCTTTCATTCAATTTTCAAAGATATGAAGTGTAATGAAGTAGAACATATGTAGTGGCATTGAGACGTGGGCTGGTTATAAATATGATAAACGTGTTATCAATTGCTTTTGTAAATTCTTTTAATGAGTAGTTTATTTTGGATGGTCGCTTATTTATATAGTTTTGATCTTTATTCTTTAACTTCTATTTCTTTAGGCCCCTTTTTTTCCTTGTATATTTGCAGTCTCCACAAACAAAGCATTGCCATGATTGTGATCGATGTGTACTTCAGTTTGATCATCGTGTGTTTGGCTCGAGACATGTATTGGCCTGGGAAATTATTGTCGATTCTGGTGGGTTTAAATTGTTTGTGATACGACAAATGGTCAACTTCATATAAATTGACTGTTTTGGTCAGTACTTTGAGTGTGAATAATGCATCACTTTAGCTGTTATGCAATATGGATTGCAAGAGGCATTGATGTAAAATGCCTCAGAAACAATTTATCTCATAGGATATAGGATGTAGGGTGATTTGTTTCTCTCATATTTTTATCATTATGACAGTTTGATTGACATAAAATCTCCAGTTTGAAACTGCTAATCATGTCAATATGTTGCAGTTTATTGTTCTCCTCGTTTTACACCATACTCTACCAATCATAATTCATGAAGGTGGAGAGTATTTACATTTTTAATGGTTAGCTTGTTGTTCAGTTTTCCCTTTCTAGTTTTCCTCCATTGTTGAGACCAATGAAGAACCACAAGCTGTGTTGTATGTTACAGTTGCTGACCTTGAGAATTGTTGGAATTCTTCTGCCTATATTTGTGATGGTTAGGGCACTTACTTCCATTCAACGACTGCGTCATTATCAGGTTAGTAATGCCGTTTATATCTTGATTTGCTTTGAATATCTTTTGGCATTTGTAGTCATTTGGGAAATTCTCTTGGGAGGATTTGTTGAGTGCAAAATTGTTGAGTGCAAAATTTGTCATGATGAGGATGATGAATCAAATATGGAGACACCGTGCTCTTGCTGTGGCAGCTCGAAGGTTAGATTTAGTTTAGTCAATGCCAACTGGTTTCACTTGTAAAACTCAGATAGCTATTCTTTGAATCCCTCTCTTTTCTAAATTTTCTCTAGTTTACATTGTACATTCAATTCTTGCTCACTCATTTTTTGAACACTATTGATATAACAATGCTCTCATCAAATTGTGGTCTTATGGGGTGTTAGGAGATGTCTAGAATGAACCTGCATGTACCTGTAGGTATGCCTGATCAGAGTATCTCACTCCCTCTTCAAGAAGCGTATTGTACTGCCGCATAATTGCCGCATAATTCTCATATATTCTTTCTCTG

mRNA sequence

ATTCTATTTGTAAAAAGGAAGAAAAAAGAAGGAAGGAGTTTAGAGTGAGTTAGGTCTGGAAGGACGAAGAAACAACGATCAAATGGATGCTGAAGCGAAGCGAAAGGCATTGTTTCGTGCGAAATTGAACGCCCAGAAGAAGGATAAGCGCATCGATTCTCCTCTCCTAAGTCTCCACAAACAAAGCATTGCCATGATTGTGATCGATGTGTACTTCAGTTTGATCATCGTGTGTTTGGCTCGAGACATGTATTGGCCTGGGAAATTATTGTCGATTCTGGTGGGTTTAAATTGTTTGTGATACGACAAATGGTCAACTTCATATAAATTGACTGTTTTGGTCAGTACTTTGAGTGTGAATAATGCATCACTTTAGCTGTTATGCAATATGGATTGCAAGAGGCATTGATGTAAAATGCCTCAGAAACAATTTATCTCATAGGATATAGGATGTAGGGTGATTTGTTTCTCTCATATTTTTATCATTATGACAGTTTGATTGACATAAAATCTCCAGTTTGAAACTGCTAATCATGTCAATATGTTGCAGTTTATTGTTCTCCTCGTTTTACACCATACTCTACCAATCATAATTCATGAAGGTGGAGAGTATTTACATTTTTAATGGTTAGCTTGTTGTTCAGTTTTCCCTTTCTAGTTTTCCTCCATTGTTGAGACCAATGAAGAACCACAAGCTGTGTTGTATGTTACAGTTGCTGACCTTGAGAATTGTTGGAATTCTTCTGCCTATATTTGTGATGGTTAGGGCACTTACTTCCATTCAACGACTGCGTCATTATCAGGTTAGTAATGCCGTTTATATCTTGATTTGCTTTGAATATCTTTTGGCATTTGTAGTCATTTGGGAAATTCTCTTGGGAGGATTTGTTGAGTGCAAAATTGTTGAGTGCAAAATTTGTCATGATGAGGATGATGAATCAAATATGGAGACACCGTGCTCTTGCTGTGGCAGCTCGAAGGAGATGTCTAGAATGAACCTGCATGTACCTGTAGGTATGCCTGATCAGAGTATCTCACTCCCTCTTCAAGAAGCGTATTGTACTGCCGCATAATTGCCGCATAATTCTCATATATTCTTTCTCTG

Coding sequence (CDS)

ATGAAGAACCACAAGCTGTGTTGTATGTTACAGTTGCTGACCTTGAGAATTGTTGGAATTCTTCTGCCTATATTTGTGATGGTTAGGGCACTTACTTCCATTCAACGACTGCGTCATTATCAGGTTAGTAATGCCGTTTATATCTTGATTTGCTTTGAATATCTTTTGGCATTTGTAGTCATTTGGGAAATTCTCTTGGGAGGATTTGTTGAGTGCAAAATTGTTGAGTGCAAAATTTGTCATGATGAGGATGATGAATCAAATATGGAGACACCGTGCTCTTGCTGTGGCAGCTCGAAGGAGATGTCTAGAATGAACCTGCATGTACCTGTAGGTATGCCTGATCAGAGTATCTCACTCCCTCTTCAAGAAGCGTATTGTACTGCCGCATAA

Protein sequence

MKNHKLCCMLQLLTLRIVGILLPIFVMVRALTSIQRLRHYQVSNAVYILICFEYLLAFVVIWEILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSRMNLHVPVGMPDQSISLPLQEAYCTAA

Homology

[Close]

BLAST of Sed0011492 vs. NCBI nr
Match: XP_022935642.1 (uncharacterized protein LOC111442434 isoform X2 [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSK-------------------------------- 116
           K+V+C+ICHDEDDES METPCSCCGS K                                
Sbjct: 56  KLVQCRICHDEDDESKMETPCSCCGSLKYAHRMCVQRWCNEKGNTICEICHQDFEPGYTA 115

[Close]

BLAST of Sed0011492 vs. NCBI nr
Match: XP_022935629.1 (uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935630.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935631.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935632.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935633.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935634.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935635.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935636.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935637.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935638.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935640.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935641.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_022935643.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSK-------------------------------- 116
           K+V+C+ICHDEDDES METPCSCCGS K                                
Sbjct: 56  KLVQCRICHDEDDESKMETPCSCCGSLKYAHRMCVQRWCNEKGNTICEICHQDFEPGYTA 115

[Close]

BLAST of Sed0011492 vs. NCBI nr
Match: XP_023528862.1 (uncharacterized protein LOC111791660 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSK-------------------------------- 116
           K+V+C+ICHDEDDES METPCSCCGS K                                
Sbjct: 56  KLVQCRICHDEDDESKMETPCSCCGSLKYAHRKCVQRWCNEKGNTICEICHQDFEPGYTA 115

[Close]

BLAST of Sed0011492 vs. NCBI nr
Match: XP_023528859.1 (uncharacterized protein LOC111791660 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023528860.1 uncharacterized protein LOC111791660 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023528861.1 uncharacterized protein LOC111791660 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSK-------------------------------- 116
           K+V+C+ICHDEDDES METPCSCCGS K                                
Sbjct: 56  KLVQCRICHDEDDESKMETPCSCCGSLKYAHRKCVQRWCNEKGNTICEICHQDFEPGYTA 115

[Close]

BLAST of Sed0011492 vs. NCBI nr
Match: XP_023893582.1 (uncharacterized protein LOC112005541 isoform X2 [Quercus suber])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 68  GFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR 105
           G    K+VECKICHDED+ESNMETPCSCCGS K   R
Sbjct: 51  GLSPSKLVECKICHDEDEESNMETPCSCCGSLKYAHR 87

[Close]

BLAST of Sed0011492 vs. ExPASy TrEMBL
Match: A0A6J1FB67 (uncharacterized protein LOC111442434 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442434 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSK-------------------------------- 116
           K+V+C+ICHDEDDES METPCSCCGS K                                
Sbjct: 56  KLVQCRICHDEDDESKMETPCSCCGSLKYAHRMCVQRWCNEKGNTICEICHQDFEPGYTA 115

[Close]

BLAST of Sed0011492 vs. ExPASy TrEMBL
Match: A0A6J1F655 (uncharacterized protein LOC111442434 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442434 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 36/95 (37.89%), Postives = 40/95 (42.11%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSK-------------------------------- 116
           K+V+C+ICHDEDDES METPCSCCGS K                                
Sbjct: 56  KLVQCRICHDEDDESKMETPCSCCGSLKYAHRMCVQRWCNEKGNTICEICHQDFEPGYTA 115

[Close]

BLAST of Sed0011492 vs. ExPASy TrEMBL
Match: A0A6P6G223 (uncharacterized protein LOC107417121 OS=Ziziphus jujuba OX=326968 GN=LOC107417121 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 72  CKIVECKICHDEDDESNMETPCSCCGSSKEMSR 105
           CK+VEC+ICHDED+ SNMETPCSCCGS K   R
Sbjct: 54  CKLVECRICHDEDEASNMETPCSCCGSLKYAHR 86

[Close]

BLAST of Sed0011492 vs. ExPASy TrEMBL
Match: A0A6P9F3Y2 (E3 ubiquitin-protein ligase MARCHF2-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109014832 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 69  FVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR 105
           F   K+VEC+ICHDED+ESNMETPCSCCGS K   R
Sbjct: 59  FSPSKLVECRICHDEDEESNMETPCSCCGSLKHAHR 94

[Close]

BLAST of Sed0011492 vs. ExPASy TrEMBL
Match: A0A2N9IF02 (RING-CH-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52279 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 73  KIVECKICHDEDDESNMETPCSCCGSSKEMSR 105
           K+VECKICHDED+ESNMETPCSCCGS K   R
Sbjct: 56  KLVECKICHDEDEESNMETPCSCCGSLKYAHR 87

[Close]

BLAST of Sed0011492 vs. TAIR 10
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-07
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 71  ECKIVECKICHDEDDESNMETPCSCCGSSK 101
           E K V+C+ICHDED+++NM+TPCSC G+ K
Sbjct: 48  ESKFVQCRICHDEDEDTNMDTPCSCSGTLK 77

[Close]

BLAST of Sed0011492 vs. TAIR 10
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 63  EILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR 105
           E+L  G  +  + EC+ICHDED +SNMETPCSC GS K   R
Sbjct: 47  EMLRNG--DLSMAECRICHDEDLDSNMETPCSCSGSVKYAHR 86

[Close]

BLAST of Sed0011492 vs. TAIR 10
Match: AT2G01275.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 63  EILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR 105
           E+L  G  +  + EC+ICHDED +SNMETPCSC GS K   R
Sbjct: 47  EMLRNG--DLSMAECRICHDEDLDSNMETPCSCSGSVKYAHR 86

[Close]

BLAST of Sed0011492 vs. TAIR 10
Match: AT5G62460.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.7e-04
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 0


Query: 75  VECKICHDEDDESNMETPCSCCGSSKEMSR 105
           VEC+IC +ED   N+E+PCSC GS K   R
Sbjct: 76  VECRICQEEDSVKNLESPCSCSGSLKYAHR 105

The following BLAST results are available for this feature:

BLAST of Sed0011492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935642.1	2.6e-06	37.89	uncharacterized protein LOC111442434 isoform X2 [Cucurbita moschata]	[more]
XP_022935629.1	2.6e-06	37.89	uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata] >XP_0229356...	[more]
XP_023528862.1	2.6e-06	37.89	uncharacterized protein LOC111791660 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023528859.1	2.6e-06	37.89	uncharacterized protein LOC111791660 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023893582.1	3.3e-06	72.97	uncharacterized protein LOC112005541 isoform X2 [Quercus suber]	[more]

BLAST of Sed0011492 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB67	1.2e-06	37.89	uncharacterized protein LOC111442434 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F655	1.2e-06	37.89	uncharacterized protein LOC111442434 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6P6G223	2.8e-06	75.76	uncharacterized protein LOC107417121 OS=Ziziphus jujuba OX=326968 GN=LOC10741712...	[more]
A0A6P9F3Y2	2.8e-06	72.22	E3 ubiquitin-protein ligase MARCHF2-like isoform X1 OS=Juglans regia OX=51240 GN...	[more]
A0A2N9IF02	2.8e-06	81.25	RING-CH-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5...	[more]

BLAST of Sed0011492 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38070.1	7.2e-07	63.33	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G01275.1	1.2e-06	57.14	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G01275.2	1.2e-06	57.14	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G62460.1	5.7e-04	56.67	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033275	E3 ubiquitin-protein ligase MARCH-like	PANTHER	PTHR23012	RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING	coord: 7..41 coord: 72..100
None	No IPR available	PANTHER	PTHR23012:SF174	E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED	coord: 7..41 coord: 72..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011492.1	Sed0011492.1	mRNA