Sed0011325 (gene) Chayote v1

Overview
NameSed0011325
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG02: 32318060 .. 32318281 (-)
RNA-Seq ExpressionSed0011325
SyntenySed0011325
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCCTACATGGGATGTTTAGGCAACCGTCATCTCAACCAAATTATGATACTCTTAGAGCCATTAACAATGCAAAGATGAAGACGGGGACATCAGTCACTGAGCATGTTTTCTAGATGATAACGTACTTCAACACAGTTGAGATCAATTAGGTTGTTATAGACGAGGAGAGCCAAGTCAAATTTATTCAAGAAACACTACTTAGTTGTTTCCTATAA

mRNA sequence

ATGGATGCCCTACATGGGATGTTTAGGCAACCGTCATCTCAACCAAATTATGATACTCTTAGAGCCATTAACAATGCAAAGATGAAGACGGGGACATCAGTCACTGAGCATGTTGTTATAGACGAGGAGAGCCAAGTCAAATTTATTCAAGAAACACTACTTAGTTGTTTCCTATAA

Coding sequence (CDS)

ATGGATGCCCTACATGGGATGTTTAGGCAACCGTCATCTCAACCAAATTATGATACTCTTAGAGCCATTAACAATGCAAAGATGAAGACGGGGACATCAGTCACTGAGCATGTTGTTATAGACGAGGAGAGCCAAGTCAAATTTATTCAAGAAACACTACTTAGTTGTTTCCTATAA

Protein sequence

MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHVVIDEESQVKFIQETLLSCFL
Homology
BLAST of Sed0011325 vs. NCBI nr
Match: XP_022158927.1 (uncharacterized protein LOC111025384 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1   MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHV---------------VIDEESQ 59
           MD+LH MF +PSSQ  ++ L+ I N++MK GTSV EHV               +I+E SQ
Sbjct: 72  MDSLHDMFGKPSSQVMHEALKFIFNSRMKEGTSVREHVLGMMVHFNVVKMNHAIINESSQ 131

BLAST of Sed0011325 vs. NCBI nr
Match: XP_022155999.1 (uncharacterized protein LOC111022974 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 0

Query: 1   MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHV---------------VIDEESQ 59
           MD+L  MF QPS Q  ++ L+ I N++MK GTS+ EHV               VIDE SQ
Sbjct: 53  MDSLRDMFGQPSIQARHEALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEMNGAVIDEGSQ 112

BLAST of Sed0011325 vs. NCBI nr
Match: XP_038895766.1 (uncharacterized protein LOC120083930 [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0

Query: 1   MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHV---------------VIDEESQ 59
           M++L GMF QPS    +D ++ + N +MK GTSV EHV               +ID++SQ
Sbjct: 67  MESLRGMFAQPSFSLRHDAIKYVYNCRMKEGTSVKEHVLNMMVHFNVTEINRAIIDDKSQ 126

BLAST of Sed0011325 vs. ExPASy TrEMBL
Match: A0A6J1DYF7 (uncharacterized protein LOC111025384 OS=Momordica charantia OX=3673 GN=LOC111025384 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1   MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHV---------------VIDEESQ 59
           MD+LH MF +PSSQ  ++ L+ I N++MK GTSV EHV               +I+E SQ
Sbjct: 72  MDSLHDMFGKPSSQVMHEALKFIFNSRMKEGTSVREHVLGMMVHFNVVKMNHAIINESSQ 131

BLAST of Sed0011325 vs. ExPASy TrEMBL
Match: A0A6J1DRZ2 (uncharacterized protein LOC111022974 OS=Momordica charantia OX=3673 GN=LOC111022974 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 0

Query: 1   MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHV---------------VIDEESQ 59
           MD+L  MF QPS Q  ++ L+ I N++MK GTS+ EHV               VIDE SQ
Sbjct: 53  MDSLRDMFGQPSIQARHEALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEMNGAVIDEGSQ 112

BLAST of Sed0011325 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.5e-04
Identity = 31/73 (42.47%), Postives = 41/73 (56.16%), Query Frame = 0

Query: 1   MDALHGMFRQPSSQPNYDTLRAINNAKMKTGTSVTEHV---------------VIDEESQ 59
           MD+L  MF QPS Q  ++ L+ + N++MK G+SV EHV               VIDE+SQ
Sbjct: 95  MDSLQSMFGQPSLQARHEALKFVYNSRMKEGSSVREHVLNLMVHFNVAESNGIVIDEQSQ 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158927.14.8e-0546.58uncharacterized protein LOC111025384 [Momordica charantia][more]
XP_022155999.15.3e-0445.21uncharacterized protein LOC111022974 [Momordica charantia][more]
XP_038895766.16.9e-0441.10uncharacterized protein LOC120083930 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DYF72.3e-0546.58uncharacterized protein LOC111025384 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DRZ22.6e-0445.21uncharacterized protein LOC111022974 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DWL07.5e-0442.47uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011325.1Sed0011325.1mRNA