Sed0011285 (gene) Chayote v1

Overview


Name	Sed0011285
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG06: 40359322 .. 40359894 (-)
RNA-Seq Expression	Sed0011285
Synteny	Sed0011285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGTTCACACTATGGTTGCTCAAGTGCGCAGCCAACAGCGGCAGCAGCGCAGTTTCGGTCGAGCAACCGAATGACGCGGTGGAACTCCGAGTGCGACTCTTAAGCCGTAACCAAATCCACAAAGAAGTGGCTCAAGACGTAATCCCTTTCCCTATGCACGACTTCGAAGCAGATCCCGCGAAATATATGACTCGCCTCGGGATGTTGCTTTGCAGGAACGGTATCTCCGCGGCCACCAGCGACATGATCATCGAGGTGGTCTTGCAGTACCTGAGCGAGCGTTTAGCTGGCGGAGAGAAAAAGAGGAGGATGCGTATAGTGATGGAAGTGGACGACGCCATCAAGCTGCATTGGACCGCGGTGGAGATCACGAACGAAGAAGATGATCGAGATCCTCGCGCGGAGTCGGAAACTTGCAGTATCTGTTTGGATGAACTGAATGGCGGGAAAAGGGAGGAGATTGAAATTCCCTGCGGGCATGTTTACCATGATTTGTGCATTTTTAACTGGTTGATCGATCACTGTACATGCCCTTTGTGCCGAGCCTCATTGTATTTCCCACACTGA

mRNA sequence

ATGGTTGTGTTCACACTATGGTTGCTCAAGTGCGCAGCCAACAGCGGCAGCAGCGCAGTTTCGGTCGAGCAACCGAATGACGCGGTGGAACTCCGAGTGCGACTCTTAAGCCGTAACCAAATCCACAAAGAAGTGGCTCAAGACGTAATCCCTTTCCCTATGCACGACTTCGAAGCAGATCCCGCGAAATATATGACTCGCCTCGGGATGTTGCTTTGCAGGAACGGTATCTCCGCGGCCACCAGCGACATGATCATCGAGGTGGTCTTGCAGTACCTGAGCGAGCGTTTAGCTGGCGGAGAGAAAAAGAGGAGGATGCGTATAGTGATGGAAGTGGACGACGCCATCAAGCTGCATTGGACCGCGGTGGAGATCACGAACGAAGAAGATGATCGAGATCCTCGCGCGGAGTCGGAAACTTGCAGTATCTGTTTGGATGAACTGAATGGCGGGAAAAGGGAGGAGATTGAAATTCCCTGCGGGCATGTTTACCATGATTTGTGCATTTTTAACTGGTTGATCGATCACTGTACATGCCCTTTGTGCCGAGCCTCATTGTATTTCCCACACTGA

Coding sequence (CDS)

ATGGTTGTGTTCACACTATGGTTGCTCAAGTGCGCAGCCAACAGCGGCAGCAGCGCAGTTTCGGTCGAGCAACCGAATGACGCGGTGGAACTCCGAGTGCGACTCTTAAGCCGTAACCAAATCCACAAAGAAGTGGCTCAAGACGTAATCCCTTTCCCTATGCACGACTTCGAAGCAGATCCCGCGAAATATATGACTCGCCTCGGGATGTTGCTTTGCAGGAACGGTATCTCCGCGGCCACCAGCGACATGATCATCGAGGTGGTCTTGCAGTACCTGAGCGAGCGTTTAGCTGGCGGAGAGAAAAAGAGGAGGATGCGTATAGTGATGGAAGTGGACGACGCCATCAAGCTGCATTGGACCGCGGTGGAGATCACGAACGAAGAAGATGATCGAGATCCTCGCGCGGAGTCGGAAACTTGCAGTATCTGTTTGGATGAACTGAATGGCGGGAAAAGGGAGGAGATTGAAATTCCCTGCGGGCATGTTTACCATGATTTGTGCATTTTTAACTGGTTGATCGATCACTGTACATGCCCTTTGTGCCGAGCCTCATTGTATTTCCCACACTGA

Protein sequence

MVVFTLWLLKCAANSGSSAVSVEQPNDAVELRVRLLSRNQIHKEVAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH

Homology

[Close]

BLAST of Sed0011285 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 66/215 (30.70%), Postives = 96/215 (44.65%), Query Frame = 0


Query: 17  SSAVSVEQPNDAVELRVRLLSRNQIHKEVA-----QDVIP-------FPMHDFEA-DPAK 76
           +SA S EQP   ++L++R   R      ++     Q+  P       FP+   E  DP  
Sbjct: 17  TSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDPVF 76

Query: 77  YMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHW--- 136
               +  LL    + +   ++I E ++ Y +  +AGG ++     V+E+D    + W   
Sbjct: 77  LQVYVAQLLSLLNVRSPVREVIAERIVSY-TLLVAGGNRETSFHTVLELDYIRVITWMEE 136

Query: 137 ------------TAVEITNEEDDRDPRAES--------ETCSICLDELNGG--------K 187
                        A E T   ++  P  E           CSICL+ELNG         K
Sbjct: 137 NHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKK 196

[Close]

BLAST of Sed0011285 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 66/215 (30.70%), Postives = 96/215 (44.65%), Query Frame = 0


Query: 17  SSAVSVEQPNDAVELRVRLLSRNQIHKEVA-----QDVIP-------FPMHDFEA-DPAK 76
           +SA S EQP   ++L++R   R      ++     Q+  P       FP+   E  DP  
Sbjct: 17  TSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDPVF 76

Query: 77  YMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHW--- 136
               +  LL    + +   ++I E ++ Y +  +AGG ++     V+E+D    + W   
Sbjct: 77  LQVYVAQLLSLLNVRSPVREVIAERIVSY-TLLVAGGNRETSFHTVLELDYIRLITWMEE 136

Query: 137 ------------TAVEITNEEDDRDPRAES--------ETCSICLDELNGG--------K 187
                        A E T   ++  P  E           CSICL+ELNG         K
Sbjct: 137 NHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGKGEGKK 196

[Close]

BLAST of Sed0011285 vs. NCBI nr
Match: XP_023544066.1 (putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-11
Identity = 59/190 (31.05%), Postives = 85/190 (44.74%), Query Frame = 0


Query: 24  QPNDAVELRV----RLLSR--NQIHKE-----VAQDVIPFPMHDFEADPAKYMTRLGMLL 83
           QP    ELR+    + +SR  NQ+ ++     ++  ++P  + D +  P      L   L
Sbjct: 28  QPMQYAELRLAYSNQFVSRSSNQLLQQTPETPISDTLLPLFLRDLQHPPFLSHFLLLQFL 87

Query: 84  CRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVD----------------DAI 143
               IS ATSD I + +  +  E LA G+  R   I++ +D                   
Sbjct: 88  STFNISTATSDAIFDDIATFALE-LAAGDHDRNFHIIVYLDLVQTIWVDLDLEIPRKQEP 147

Query: 144 KLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH 187
              W    +  EE D     E+  CS+C DEL  G+ E   +PCGHV+H  CI NWL   
Sbjct: 148 AAAWVMERVMREEFDGFRAEEAGDCSVCCDELR-GETEVRRLPCGHVFHKSCILNWLQLT 207

[Close]

BLAST of Sed0011285 vs. NCBI nr
Match: XP_023544065.1 (putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-11
Identity = 59/190 (31.05%), Postives = 85/190 (44.74%), Query Frame = 0


Query: 24  QPNDAVELRV----RLLSR--NQIHKE-----VAQDVIPFPMHDFEADPAKYMTRLGMLL 83
           QP    ELR+    + +SR  NQ+ ++     ++  ++P  + D +  P      L   L
Sbjct: 28  QPMQYAELRLAYSNQFVSRSSNQLLQQTPETPISDTLLPLFLRDLQHPPFLSHFLLLQFL 87

Query: 84  CRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVD----------------DAI 143
               IS ATSD I + +  +  E LA G+  R   I++ +D                   
Sbjct: 88  SPFNISTATSDAIFDDIATFALE-LAAGDHDRNFHIIVYLDLVQTIWVDLDLEIPRKQEP 147

Query: 144 KLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH 187
              W    +  EE D     E+  CS+C DEL  G+ E   +PCGHV+H  CI NWL   
Sbjct: 148 AAAWVLERVMREEFDGFRAEEAGDCSVCCDELR-GETEVRRLPCGHVFHKSCILNWLQLT 207

[Close]

BLAST of Sed0011285 vs. NCBI nr
Match: XP_016901482.1 (PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo] >KAA0044413.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29540.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 124 EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCR 183
           ++ +EE++ D       CS+CLDEL+ GKRE I IPCGHVYH+ CIF WL ++ +CPLCR
Sbjct: 160 KLKSEEEEGD-------CSVCLDELDCGKREVIRIPCGHVYHESCIFEWLNNNNSCPLCR 214

Query: 184 AS 186
            S
Sbjct: 220 TS 214

[Close]

BLAST of Sed0011285 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 112 VDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELN-GGKREEIEIPCGHVYHDLCIF 171
           V  A+K  W + E  + +   D      TC IC D++N   +++  ++PCGH++   C+ 
Sbjct: 83  VKRAVKEAWDSFEPLSNDQLMD-----LTCPICYDDMNENDEKQATKMPCGHIFGKNCLQ 142

Query: 172 NWLIDHCTCPLCRASLYFPH 191
            WL +HCTCPLCR  +  PH
Sbjct: 143 KWLENHCTCPLCRKEV--PH 155

[Close]

BLAST of Sed0011285 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 0


Query: 121 TAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCP 180
           TA     EE++ D   +   C++CL EL  G+       CGH +H  C+  WL  H TCP
Sbjct: 116 TAAAAAKEEEEEDD--DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCP 175

Query: 181 LCRASLYFP 190
           LCR ++  P
Sbjct: 176 LCRLTVVVP 182

[Close]

BLAST of Sed0011285 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0


Query: 81  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRA 140
           T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+
Sbjct: 137 TGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKI-----------AQRHLRS 196

Query: 141 ESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 187
               C +C DE   G  E  ++PC H+YH  CI  WL+ H +CP+CR  L
Sbjct: 197 SDSNCPVCKDEFELGS-EAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

[Close]

BLAST of Sed0011285 vs. ExPASy Swiss-Prot
Match: Q9C919 (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-07
Identity = 25/60 (41.67%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 127 NEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 186
           N E+D +   ES  C+ICL      +   +   C H+YH LCI  WL +H TCP CR  L
Sbjct: 116 NHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCRKDL 175

[Close]

BLAST of Sed0011285 vs. ExPASy Swiss-Prot
Match: Q9ULK6 (RING finger protein 150 OS=Homo sapiens OX=9606 GN=RNF150 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 30/127 (23.62%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 63  KYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTA 122
           KY++R  ++             +  +V  Y+        + R  R    + DA K   + 
Sbjct: 202 KYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQR---RLGDAAKKAISK 261

Query: 123 VEI-TNEEDDRDPRAESETCSICLDELNGGKREEIE--IPCGHVYHDLCIFNWLIDHCTC 182
           ++I T ++ D++  ++ + C++C++   G K  ++   +PC H++H  C+  WL+DH TC
Sbjct: 262 LQIRTIKKGDKETESDFDNCAVCIE---GYKPNDVVRILPCRHLFHKSCVDPWLLDHRTC 321

Query: 183 PLCRASL 187
           P+C+ ++
Sbjct: 322 PMCKMNI 322

[Close]

BLAST of Sed0011285 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 124 EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCR 183
           ++ +EE++ D       CS+CLDEL+ GKRE I IPCGHVYH+ CIF WL ++ +CPLCR
Sbjct: 160 KLKSEEEEGD-------CSVCLDELDCGKREVIRIPCGHVYHESCIFEWLNNNNSCPLCR 214

Query: 184 AS 186
            S
Sbjct: 220 TS 214

[Close]

BLAST of Sed0011285 vs. ExPASy TrEMBL
Match: A0A1S4DZR1 (uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 124 EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCR 183
           ++ +EE++ D       CS+CLDEL+ GKRE I IPCGHVYH+ CIF WL ++ +CPLCR
Sbjct: 160 KLKSEEEEGD-------CSVCLDELDCGKREVIRIPCGHVYHESCIFEWLNNNNSCPLCR 214

Query: 184 AS 186
            S
Sbjct: 220 TS 214

[Close]

BLAST of Sed0011285 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-11
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 141 CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 187
           CSICLDEL+  KRE I IPCGHVYH+ CIF WL +H +CPLCR  L
Sbjct: 174 CSICLDELSCEKREVIRIPCGHVYHESCIFKWLKNHNSCPLCRKPL 219

[Close]

BLAST of Sed0011285 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-11
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 141 CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 187
           CSICLDEL+  KRE I IPCGHVYH+ CIF WL +H +CPLCR  L
Sbjct: 174 CSICLDELSCEKREVIRIPCGHVYHESCIFKWLKNHNSCPLCRKPL 219

[Close]

BLAST of Sed0011285 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.3e-11
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 141 CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLY 188
           CSICLDEL+  KRE + IPCGHVYH+ CIF WL +H +CPLCR  L+
Sbjct: 173 CSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPLH 219

[Close]

BLAST of Sed0011285 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-09
Identity = 40/165 (24.24%), Postives = 70/165 (42.42%), Query Frame = 0


Query: 25  PNDAVELRVRLLSRNQIHKEVAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDM 84
           P   +++ +R  S + I   +   ++ +P   +  D          +    G +  T  M
Sbjct: 56  PPFLIDINLRSSSHDHIRTLLHDRLVGYPFESYLCDDLAPKISTAAIDLGFGHNGFTLTM 115

Query: 85  IIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSIC 144
              V  + +S  ++  EK  RM ++  +                E+ +  + E+E CSIC
Sbjct: 116 AATVTYRTVSV-MSNDEKSLRMVLLGRM--------------KAEEFKSLKMETEPCSIC 175

Query: 145 LDELNGG--KREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLY 188
           L+ L  G   R+   + C HV+H+ C+  WL    TCPLCR  +Y
Sbjct: 176 LESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEIY 205

[Close]

BLAST of Sed0011285 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0


Query: 81  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRA 140
           T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+
Sbjct: 137 TGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKI-----------AQRHLRS 196

Query: 141 ESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 187
               C +C DE   G  E  ++PC H+YH  CI  WL+ H +CP+CR  L
Sbjct: 197 SDSNCPVCKDEFELGS-EAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

[Close]

BLAST of Sed0011285 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0


Query: 81  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRA 140
           T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+
Sbjct: 137 TGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKI-----------AQRHLRS 196

Query: 141 ESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 187
               C +C DE   G  E  ++PC H+YH  CI  WL+ H +CP+CR  L
Sbjct: 197 SDSNCPVCKDEFELGS-EAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

[Close]

BLAST of Sed0011285 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0


Query: 81  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRA 140
           T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+
Sbjct: 137 TGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKI-----------AQRHLRS 196

Query: 141 ESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL 187
               C +C DE   G  E  ++PC H+YH  CI  WL+ H +CP+CR  L
Sbjct: 197 SDSNCPVCKDEFELGS-EAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

[Close]

BLAST of Sed0011285 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 141 CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH 191
           C+IC +EL   +R   E+PC H YH  CI NWL +  TCPLCR ++  P+
Sbjct: 97  CAICREELAANERLS-ELPCRHYYHKECISNWLSNRNTCPLCRHNVELPN 145

The following BLAST results are available for this feature:

BLAST of Sed0011285 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595648.1	3.0e-11	30.70	hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595650.1	3.0e-11	30.70	hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023544066.1	3.9e-11	31.05	putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo]	[more]
XP_023544065.1	5.1e-11	31.05	putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo]	[more]
XP_016901482.1	1.1e-10	54.84	PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo] >KAA0044413.1 E3 ...	[more]

BLAST of Sed0011285 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y7K6	1.4e-08	36.25	Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai...	[more]
Q9LRB7	1.6e-07	37.68	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
O22197	2.1e-07	30.91	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9C919	2.7e-07	41.67	Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 P...	[more]
Q9ULK6	4.6e-07	23.62	RING finger protein 150 OS=Homo sapiens OX=9606 GN=RNF150 PE=1 SV=2	[more]

BLAST of Sed0011285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLM1	5.5e-11	54.84	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DZR1	5.5e-11	54.84	uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=...	[more]
A0A5D3E1S5	7.1e-11	69.57	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	7.1e-11	69.57	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]
A0A0A0K696	9.3e-11	65.96	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 P...	[more]

BLAST of Sed0011285 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05350.1	6.6e-09	24.24	RING/U-box superfamily protein	[more]
AT2G40830.2	1.5e-08	30.91	RING-H2 finger C1A	[more]
AT2G40830.1	1.5e-08	30.91	RING-H2 finger C1A	[more]
AT2G40830.3	1.5e-08	30.91	RING-H2 finger C1A	[more]
AT3G30460.1	1.5e-08	48.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 141..182 e-value: 2.4E-4 score: 30.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 140..183 e-value: 1.7E-10 score: 41.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 141..183 score: 12.238477
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 102..187 e-value: 1.5E-16 score: 61.8
None	No IPR available	PANTHER	PTHR22765:SF329	SUBFAMILY NOT NAMED	coord: 106..184
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 106..184
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 140..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011285.1	Sed0011285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity