Sed0011273 (gene) Chayote v1

Overview
NameSed0011273
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein, putative
LocationLG02: 49361164 .. 49361944 (-)
RNA-Seq ExpressionSed0011273
SyntenySed0011273
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGGTTTAGCCGTTTTTTTGTGTGTCTTTTCTTCATCCCTACTCGCAAGAAGAGTAGAATTATACGCGAGGGAACGATCTGAGTTTAGGGACGGCGGAAAGAGATCCGATGAACGGAGCGGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTAGTGATCGGAGCTCTGGCCTTCGGGTACCTAAATCTACAGCTCGTACTCAAACCCTACCTCGAGAAAGCTCAAACCTCTCTTCAAATTCCGGATTCGGATCCCTCCACAGTTCACAAAGACGACATTTCAAAGCTTGAGGATTAAGCTCCATCTTCGTCCATTTTGCCTCGGTATGTCTCAATTTAGCTTAGCGATAGATTAGGTTGGAATTTCTTAGGGTTCAAAGAGATATCGGAAGACGAAAGTTGGATCTAATGCTCTATTTGTTGAAGAATATAATAGATGCGAATAAACGATTGACATTTTTTGCTCTCTTTGATTAATGGGGAATCCTTTCAGTTTTTGTGGTATTGGCTGGCTCGCTGCTTAAATCTGAATTCTGAAAATTGCTATTCTCGGATTTTGCTCTTTCTTTTTGGTTGTTTGGTGTTGCTTAAGTTGTAAATGTCACTGATATGTCCCCGAACGAGTGGTGCGGTGCTTGAACGCCTGCGCTTTCAAGGTGTGCTTCCCTCAAGTTTCGAGTGTCAAAAATTACTCGTGACATTAATTTGTAGACACTTCCAGTGTCTTCATTCTTTGATGTCTCTCGGTGTATGGCTTAAGAACGAGAGTGCTTAGCCCGGG

mRNA sequence

TTCGGTTTAGCCGTTTTTTTGTGTGTCTTTTCTTCATCCCTACTCGCAAGAAGAGTAGAATTATACGCGAGGGAACGATCTGAGTTTAGGGACGGCGGAAAGAGATCCGATGAACGGAGCGGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTAGTGATCGGAGCTCTGGCCTTCGGGTACCTAAATCTACAGCTCGTACTCAAACCCTACCTCGAGAAAGCTCAAACCTCTCTTCAAATTCCGGATTCGGATCCCTCCACAGTTCACAAAGACGACATTTCAAAGCTTGAGGATTAAGCTCCATCTTCGTCCATTTTGCCTCGGTATGTCTCAATTTAGCTTAGCGATAGATTAGGTTGGAATTTCTTAGGGTTCAAAGAGATATCGGAAGACGAAAGTTGGATCTAATGCTCTATTTGTTGAAGAATATAATAGATGCGAATAAACGATTGACATTTTTTGCTCTCTTTGATTAATGGGGAATCCTTTCAGTTTTTGTGGTATTGGCTGGCTCGCTGCTTAAATCTGAATTCTGAAAATTGCTATTCTCGGATTTTGCTCTTTCTTTTTGGTTGTTTGGTGTTGCTTAAGTTGTAAATGTCACTGATATGTCCCCGAACGAGTGGTGCGGTGCTTGAACGCCTGCGCTTTCAAGGTGTGCTTCCCTCAAGTTTCGAGTGTCAAAAATTACTCGTGACATTAATTTGTAGACACTTCCAGTGTCTTCATTCTTTGATGTCTCTCGGTGTATGGCTTAAGAACGAGAGTGCTTAGCCCGGG

Coding sequence (CDS)

ATGAACGGAGCGGCGAAGTTGAATGCGGTGAGGTCCGGCGTGGTAGTGATCGGAGCTCTGGCCTTCGGGTACCTAAATCTACAGCTCGTACTCAAACCCTACCTCGAGAAAGCTCAAACCTCTCTTCAAATTCCGGATTCGGATCCCTCCACAGTTCACAAAGACGACATTTCAAAGCTTGAGGATTAA

Protein sequence

MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDISKLED
Homology
BLAST of Sed0011273 vs. NCBI nr
Match: KAG7018683.1 (hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDISKL 60
          M  AAKLNAVRSGVVVIGALAFGYL+L LV KPYLEKAQ+SLQ PDS+PST+ KD IS  
Sbjct: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 93

Query: 61 ED 63
          +D
Sbjct: 94 DD 95

BLAST of Sed0011273 vs. NCBI nr
Match: KAG6582279.1 (hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 6.1e-14
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDISKL 60
          M  AAKLNAVRSGVVVIGALAFGYL+L LV KPYLEKAQ SLQ P+S+PST+ KD IS  
Sbjct: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNR 70

Query: 61 ED 63
          +D
Sbjct: 71 DD 72

BLAST of Sed0011273 vs. NCBI nr
Match: KGN57013.1 (hypothetical protein Csa_010432 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDISKL 60
          M   AKLNA RSG+VVIGALAFGYL+LQLV KPYLEKAQ+SLQ P+ +PST+ KD IS L
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 61 E 62
          +
Sbjct: 61 D 61

BLAST of Sed0011273 vs. NCBI nr
Match: KAA0049387.1 (hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK17172.1 hypothetical protein E5676_scaffold434G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1  MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDIS 59
          M   AKLNA RSG+VVIGALAFGYL+LQ+  KPYLEKAQ+ LQ P+ +PST+ KD +S
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVS 58

BLAST of Sed0011273 vs. NCBI nr
Match: KAG4960153.1 (hypothetical protein JHK87_036786 [Glycine soja] >KAG4971168.1 hypothetical protein JHK85_037589 [Glycine max] >KAG4977568.1 hypothetical protein JHK86_037042 [Glycine max] >KAG5113566.1 hypothetical protein JHK82_036835 [Glycine max] >KAG5130845.1 hypothetical protein JHK84_037242 [Glycine max])

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 6  KLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPST 52
          K+NA+RSG+VV+GALAFGYL++Q+  KPYLEKAQ    + +SDPS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

BLAST of Sed0011273 vs. ExPASy TrEMBL
Match: A0A0A0L5N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDISKL 60
          M   AKLNA RSG+VVIGALAFGYL+LQLV KPYLEKAQ+SLQ P+ +PST+ KD IS L
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 61 E 62
          +
Sbjct: 61 D 61

BLAST of Sed0011273 vs. ExPASy TrEMBL
Match: A0A5A7U4W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00160 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1  MNGAAKLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPSTVHKDDIS 59
          M   AKLNA RSG+VVIGALAFGYL+LQ+  KPYLEKAQ+ LQ P+ +PST+ KD +S
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVS 58

BLAST of Sed0011273 vs. ExPASy TrEMBL
Match: A0A0R0GRJ1 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G207400 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 6  KLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPST 52
          K+NA+RSG+VV+GALAFGYL++Q+  KPYLEKAQ    + +SDPS+
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 55

BLAST of Sed0011273 vs. ExPASy TrEMBL
Match: A0A371EJR3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_55019 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 6  KLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPS 51
          K+NA+RSG+VV+GALAFGYL+LQ+  KPYLEKAQ    +  SDPS
Sbjct: 10 KMNAIRSGIVVLGALAFGYLSLQIGFKPYLEKAQNQSALYQSDPS 54

BLAST of Sed0011273 vs. ExPASy TrEMBL
Match: A0A445I812 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_031311 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 6  KLNAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQTSLQIPDSDPST 52
          K+NA+RSG+VV+GALAFGYL++Q+  KPYLEKAQ    + +SDPS+
Sbjct: 43 KMNAIRSGIVVLGALAFGYLSIQIGFKPYLEKAQNQNALYESDPSS 88

BLAST of Sed0011273 vs. TAIR 10
Match: AT5G19151.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 2.9e-06
Identity = 22/32 (68.75%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 8  NAVRSGVVVIGALAFGYLNLQLVLKPYLEKAQ 40
          NA+RS VVV+G+LAFGYL+L+L  KP+LEKA+
Sbjct: 8  NAIRSSVVVLGSLAFGYLSLELGYKPFLEKAE 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018683.17.2e-1577.42hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6582279.16.1e-1475.81hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57013.12.3e-1372.13hypothetical protein Csa_010432 [Cucumis sativus][more]
KAA0049387.11.4e-1067.24hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK171... [more]
KAG4960153.17.2e-0763.04hypothetical protein JHK87_036786 [Glycine soja] >KAG4971168.1 hypothetical prot... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5N11.1e-1372.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1[more]
A0A5A7U4W26.8e-1167.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0R0GRJ13.5e-0763.04Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G207400 PE=4 SV=1[more]
A0A371EJR33.5e-0766.67Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_55019 P... [more]
A0A445I8123.5e-0763.04Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_031311 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G19151.12.9e-0668.75unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..62
NoneNo IPR availablePANTHERPTHR33982:SF4OS05G0532800 PROTEINcoord: 1..55
IPR038944Outer envelope membrane protein 7-likePANTHERPTHR33982OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATEDcoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011273.1Sed0011273.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane