Sed0011256 (gene) Chayote v1

Overview


Name	Sed0011256
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DEAD-box ATP-dependent RNA helicase 38
Location	LG04: 28816691 .. 28819294 (-)
RNA-Seq Expression	Sed0011256
Synteny	Sed0011256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGTTCGGCGGCTCCAGACTCCGCCACCGTCGCCTCCACCGCCATTTTCTACGGCGGCTCGAGTTCTGCCTCGCCGGAAGTTGCACCGGTGCCCAAACGCGCTGAAGAAGACGAAGATGTGGTTGATGCTGTAAATTCATTCTCTGCACCTTTGGAGTTAACGGAATCCCTTGAAATCGAAGAGGATACATTTCTTGAAGAGCCCGAAGACTGTAACATCACAGCGGTTAGTTTCGTACTCACTTAGTATCGATTGGGCGTGCAAATGTGGGTTTAGAACTGGGATTTAGCTTCTAGGAATTAAGTAAATAGGAAATGAGCGATTAAGACGATCCATTTCGATTTAGGGTTTGGGTGAGGGTTTTAGAGCTTTAGCTGTGGCTGTACTCACCGGGCTGGGATTTGGTTATTCGTGCATCGTAGTAACATAATTGAAATTCCTGAACTACGTAAATTAAAGTGGCTGCATACTACACTTCTTTGTGCATTGGAATAACATTATTGATATTTCCGATCTGTGTAAATAAGAACTTTTAGGCCTGTCCGTTAATCATTTGATTTTTTTGTTTTGGTTTTTAAAATTCTAAGCCTATTCTTACTCAAATTTCCTATCACGCGTTCCACTATTCTTACAATGTATTCATCTTTCCCTCAGAAAGTAGGTGAATATTGACTAAGTTTTAAAAACAAAAACAAACTTTTGTAAGTTTTTTTGTTTTTTTTTTCCAAATTTTGATTTGGTTTCTACGAATATAGGTGAGAGATAGATATCAAGGTAAGAAAAAACATATGGTTAGATACTTTTTGTAGGCTTAAATTTTAAAAACCAAATGATTACCAAACGGGGTCTTAATTATCATAGACTTACCTAGTGGTCAAGAGGACATTAAGACCCGATTTGATAACTTTTTTTTTTTTTTGGTATTTGACATTTAAGCTTATTTTTACTCAAATTTCACACAATGTGTTCCATCTTTTATACAATGTATCAATTTTTTCAAAAACAAAAACAAAGTTTTTGAAGCTACTTTTTTTTTGTTTTCAAATTTTGGTTTGGTTTCTAAAAATATGGGTAGGATGTAGATATCCAAGTAAGAAAATTATATGAGAAGATAGTTGTTGTAGGCTTAAATTTCAAAAACTAAAAACAAAATGATTATCAAATGAGGCCCAAGTAATTAATAGTCGATAGGTTCAATTCATAATAGCCGACCATAGACATAGTTGAGGGTCACCAGATAGTAATGAATATAAAAAATAGGGAAAAGTACATTTTTAATGCATAGGTTTTGGATGTAATTTCTATGTGGTCTTTTGACATTTCATTATTATATTAGAATTTAAAATGAGTTGATTTTGTTATTTCATTATCTAAAATTGAGGATTATTATCTACTTAAAAGTGTTCGATTTTGACCAAATAAGAAACTACACCAAAAACCAATGGACTAAAAAGGTACCTTTTTCAAAAAAGTAAATAAGAACTGTTTCAAGGTAGTTGATAACCGGCAAAGTTTTTCTTAGAAGCTTTAGTTTGATAGTATTTCAGTGTAGGCTTTCTTCTTGTGCTATTCGGTTGATTTTGTTTTTCATTTGGTGTAGATACCATTCAATGGTACTCCATATACATCAGCTACAACTTTTCACGATCTGAATCTGTCTCCAGAATTGTTGAAGGGATTGTATGTTGAGGTGCAATTCCAAAAGCCAAGTAAGATTCAAGCTATAAGTTTGCCAATGATCTTGACTCCTCCACACAAACATTTAATTGCTCAAGCACACAATGGTTCTGGCAAGACTACTTGTTTTGTACTTGGGATGATGAGTCGCGTTGATCCAAACTTGAAGGCTCCTCAGGCACTTTGCATATGTCATACAAGGGAGTTAGCCATTCAGGTCAACATTCTCCCTTTTGTTTGTTTAACTCAATGACTTGTTTTTGGATAAGAAACAATTTCATTGCTACGTAAAATTACAAAAAGGCTCAAACCATTATGGAGTGGCCTACCTAAGAAATTCCTACGAATTTTCTTGACATTCAAATGTTGTAGCAGCAGGTCATATGGTAATGACCCTTGAGAATAGTCGAAATGTGTGTAAGCTGCCTGGGCACTCACGAATATCAAAAATAAAAATAAAAAAACAAACAAAAAACAAAAAGAGGCCCCAAGGGCAAAACTTACTTAAAGACTCTCCTTAAAAAAATGACAGGAAACAGATACAAAAAAGACCTCTTCCATTAAAAAGGTGAGGAGAATAACTATAAAATTATAATCCACAAAAAGAGAAGAACGCTTTAAGAATAAAATCAAAGAAAGCGGGATAGAATTCCTGCTGTTGTGTGATCACTACAGGAGCTGTGTTCAACTTGATCTATGATGATCCGGAACTCGCACAAATGGGAAAAATTCAGAACCACTTTGGATCTCAAATAACAGAGGTAGAATTCCTTCTGAAGTCGACATCATTTGAGTTTCACTCATTTCCTTATCTGTACGGATATCGAATTATTACCTCATTCCCTTTTGATATTTGAGTTTCAGGTTCGAGACTCTAATGACGGCTTTCGAGCGGCCTTGAAATCTGCTGGTTTGCTTTGA

mRNA sequence

ATGACAGGTTCGGCGGCTCCAGACTCCGCCACCGTCGCCTCCACCGCCATTTTCTACGGCGGCTCGAGTTCTGCCTCGCCGGAAGTTGCACCGGTGCCCAAACGCGCTGAAGAAGACGAAGATGTGGTTGATGCTGTAAATTCATTCTCTGCACCTTTGGAGTTAACGGAATCCCTTGAAATCGAAGAGGATACATTTCTTGAAGAGCCCGAAGACTGTAACATCACAGCGATACCATTCAATGGTACTCCATATACATCAGCTACAACTTTTCACGATCTGAATCTGTCTCCAGAATTGTTGAAGGGATTGTATGTTGAGGTGCAATTCCAAAAGCCAAGTAAGATTCAAGCTATAAGTTTGCCAATGATCTTGACTCCTCCACACAAACATTTAATTGCTCAAGCACACAATGGTTCTGGCAAGACTACTTGTTTTGTACTTGGGATGATGAGTCGCGTTGATCCAAACTTGAAGGCTCCTCAGGCACTTTGCATATGTCATACAAGGGAGTTAGCCATTCAGGTTCGAGACTCTAATGACGGCTTTCGAGCGGCCTTGAAATCTGCTGGTTTGCTTTGA

Coding sequence (CDS)

ATGACAGGTTCGGCGGCTCCAGACTCCGCCACCGTCGCCTCCACCGCCATTTTCTACGGCGGCTCGAGTTCTGCCTCGCCGGAAGTTGCACCGGTGCCCAAACGCGCTGAAGAAGACGAAGATGTGGTTGATGCTGTAAATTCATTCTCTGCACCTTTGGAGTTAACGGAATCCCTTGAAATCGAAGAGGATACATTTCTTGAAGAGCCCGAAGACTGTAACATCACAGCGATACCATTCAATGGTACTCCATATACATCAGCTACAACTTTTCACGATCTGAATCTGTCTCCAGAATTGTTGAAGGGATTGTATGTTGAGGTGCAATTCCAAAAGCCAAGTAAGATTCAAGCTATAAGTTTGCCAATGATCTTGACTCCTCCACACAAACATTTAATTGCTCAAGCACACAATGGTTCTGGCAAGACTACTTGTTTTGTACTTGGGATGATGAGTCGCGTTGATCCAAACTTGAAGGCTCCTCAGGCACTTTGCATATGTCATACAAGGGAGTTAGCCATTCAGGTTCGAGACTCTAATGACGGCTTTCGAGCGGCCTTGAAATCTGCTGGTTTGCTTTGA

Protein sequence

MTGSAAPDSATVASTAIFYGGSSSASPEVAPVPKRAEEDEDVVDAVNSFSAPLELTESLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQVRDSNDGFRAALKSAGLL

Homology

[Close]

BLAST of Sed0011256 vs. NCBI nr
Match: XP_022144714.1 (DEAD-box ATP-dependent RNA helicase 38 [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-58
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MTGSAAPDSATV-----------ASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAV 60
           M  SAAPDS T            A+ A    GSSSA   V PVPKRA   EED+DVVDA 
Sbjct: 1   MADSAAPDSGTATISPPADTASPAAAAAATAGSSSAPTVVTPVPKRAWGDEEDDDVVDAG 60

Query: 61  NSFSAPLELTESLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYV 120
           +S SAP +  ESL+I E+  LEEPED NITA+    TPY+SA+TF DLNLSPELLKGLYV
Sbjct: 61  DSSSAPSDYMESLKIREEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPELLKGLYV 120

Query: 121 EVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCI 176
           E++FQKPSKIQAISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVDPNLK PQALCI
Sbjct: 121 EMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKVPQALCI 180

[Close]

BLAST of Sed0011256 vs. NCBI nr
Match: XP_038906287.1 (DEAD-box ATP-dependent RNA helicase 38 [Benincasa hispida] >XP_038906288.1 DEAD-box ATP-dependent RNA helicase 38 [Benincasa hispida] >XP_038906289.1 DEAD-box ATP-dependent RNA helicase 38 [Benincasa hispida])

HSP 1 Score: 228.4 bits (581), Expect = 5.2e-56
Identity = 130/185 (70.27%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 1   MTGSAAPDSAT------VASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAVNSFSA 60
           M   AAPDS T       A+TA    GSSSA P V PVPKRA   EED+DV D  +S SA
Sbjct: 1   MADHAAPDSTTSDASAPAAATATATDGSSSAPPIVTPVPKRAWGDEEDDDVGDTGDSSSA 60

Query: 61  PLELTESLEIEED-TFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQF 120
           P E  ESL+IE+D T L+EP D NITA+   GTPYTSA+TF DLNLS ELLKGLYVE++F
Sbjct: 61  PSEYLESLKIEDDETTLDEPIDSNITAVTTGGTPYTSASTFEDLNLSKELLKGLYVEMRF 120

Query: 121 QKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTR 176
            KPSKIQAISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TR
Sbjct: 121 HKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTR 180

[Close]

BLAST of Sed0011256 vs. NCBI nr
Match: XP_038876100.1 (DEAD-box ATP-dependent RNA helicase 38-like [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 6.8e-56
Identity = 125/178 (70.22%), Postives = 141/178 (79.21%), Query Frame = 0


Query: 1   MTGSAAPDSATVASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAVNSFSAPLELTE 60
           M   AA DS+T  ++A    GSSSA P V PVPKRA   EED+DV D  +S SAP E  E
Sbjct: 1   MADQAAADSSTTNASAAATVGSSSAPPVVTPVPKRAWGDEEDDDVGDTGDSSSAPSEYLE 60

Query: 61  SLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQ 120
           SL+IE+++ LEEP D NITA+    TPYTSA+TF DLNLS ELLKGLYVE++F KPSKIQ
Sbjct: 61  SLKIEDESNLEEPIDSNITAVTTGDTPYTSASTFEDLNLSKELLKGLYVEMKFHKPSKIQ 120

Query: 121 AISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           AISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+Q
Sbjct: 121 AISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQ 178

[Close]

BLAST of Sed0011256 vs. NCBI nr
Match: XP_022982922.1 (DEAD-box ATP-dependent RNA helicase 38 [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 8.9e-56
Identity = 121/178 (67.98%), Postives = 142/178 (79.78%), Query Frame = 0


Query: 1   MTGSAAPDSATVASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAVNSFSAPLELTE 60
           M   AAPDS T  +++     +++  P V PVPKRA   EED+DV DA +S SAP E  E
Sbjct: 1   MADPAAPDSTTSNASSAASADAATTPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPSEYME 60

Query: 61  SLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQ 120
           SL+I+++  LEEPED NITA+    TPY+SA+TF DLNLSPE+LKGLYVE++FQKPSKIQ
Sbjct: 61  SLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSKIQ 120

Query: 121 AISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           AISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+Q
Sbjct: 121 AISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQ 178

[Close]

BLAST of Sed0011256 vs. NCBI nr
Match: XP_023527796.1 (DEAD-box ATP-dependent RNA helicase 38 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-55
Identity = 121/178 (67.98%), Postives = 141/178 (79.21%), Query Frame = 0


Query: 1   MTGSAAPDSATVASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAVNSFSAPLELTE 60
           M   AAPDS T  ++      +++  P V PVPKRA   EED+DV DA +S SAP E  E
Sbjct: 1   MADPAAPDSTTSNASTAAAAVTATTPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPSEYME 60

Query: 61  SLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQ 120
           SL+I+++  LEEPED NITA+    TPY+SA+TF DLNLSPE+LKGLYVE++FQKPSKIQ
Sbjct: 61  SLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSKIQ 120

Query: 121 AISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           AISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+Q
Sbjct: 121 AISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQ 178

[Close]

BLAST of Sed0011256 vs. ExPASy Swiss-Prot
Match: Q93ZG7 (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana OX=3702 GN=RH38 PE=1 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 102/177 (57.63%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 2   TGSAAPDSATVASTAIFYGGSSSASPEVAPVPKR---AEEDEDVVDAVNSFSAPLELTES 61
           T    P     +S++     +S+   E     K+    E+D+D  +AV+  ++   L+  
Sbjct: 4   TVEKVPTVVESSSSSTVEASNSAEKTEPTTEKKKWGDVEDDDDEEEAVSELNS---LSIK 63

Query: 62  LEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQA 121
            E + D+ LEEPED NI A+    TPYTSA+ F DLNLSPEL+KGLYVE++F+KPSKIQA
Sbjct: 64  EEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQA 123

Query: 122 ISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           ISLPMI+TPPHKHLIAQAHNGSGKTTCFVLGM+SRVDP L+ PQALCIC TRELA Q
Sbjct: 124 ISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQ 177

[Close]

BLAST of Sed0011256 vs. ExPASy Swiss-Prot
Match: Q10RI7 (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-35
Identity = 90/171 (52.63%), Postives = 112/171 (65.50%), Query Frame = 0


Query: 8   DSATVASTAIFYGGSSSASPEVAPVPKRAEEDEDVVDAVNSFSAPLELTESLEIEED--- 67
           + A   + A     SSS+S E A V  +A++ E +     S S P E   S    +D   
Sbjct: 22  EEAKAKAAAAAEAASSSSSNEPA-VDAQAKQIEAL-----SLSVPEEHGGSGGGGDDQGP 81

Query: 68  TFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMI 127
             L++ ++  I A+   GT Y SA  F DL L+PELLKGL+ E+ F +PSKIQA++LPMI
Sbjct: 82  PLLDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMI 141

Query: 128 LTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           LTPP+K LIAQAHNGSGKTTCFVLGM+SRVDPN K  QA+CIC TRELA Q
Sbjct: 142 LTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQ 186

[Close]

BLAST of Sed0011256 vs. ExPASy Swiss-Prot
Match: Q5AJD0 (ATP-dependent RNA helicase DBP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 PE=3 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-21
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 83  TPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGK 142
           +P  S  +F +L LSPELLKGLY  ++F KPSKIQ  +LP++L+ P +++I Q+ +G+GK
Sbjct: 144 SPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 203

Query: 143 TTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           T  F L M+SRVDP +K PQ LC+  TRELA Q
Sbjct: 204 TAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQ 235

[Close]

BLAST of Sed0011256 vs. ExPASy Swiss-Prot
Match: Q09747 (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-20
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 83  TPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGK 142
           +P  S  +F +L L PELLKG+Y  ++FQKPSKIQ  +LP++L+ P +++I Q+ +G+GK
Sbjct: 108 SPLFSVKSFEELELKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 167

Query: 143 TTCFVLGMMSRVDPNLKAPQALCICHTRELAIQVRD 179
           T  F L M+SRVD ++  PQA+C+  +RELA Q+ D
Sbjct: 168 TAAFALTMLSRVDASVPKPQAICLAPSRELARQIMD 202

[Close]

BLAST of Sed0011256 vs. ExPASy Swiss-Prot
Match: Q54TF8 (ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum OX=44689 GN=helC PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-20
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 83  TPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGK 142
           +P  S  TF +L L PELLKG+Y  + + KPSKIQ  +LP+I+  P+ +LIAQ+ +G+GK
Sbjct: 64  SPLYSVKTFEELGLKPELLKGVYA-MGYNKPSKIQEAALPIIIQSPN-NLIAQSQSGTGK 123

Query: 143 TTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           T  F LGM++ VDP++ APQA+CI  T+ELA+Q
Sbjct: 124 TAAFTLGMLNCVDPSINAPQAICISPTKELALQ 154

[Close]

BLAST of Sed0011256 vs. ExPASy TrEMBL
Match: A0A6J1CT40 (DEAD-box ATP-dependent RNA helicase 38 OS=Momordica charantia OX=3673 GN=LOC111014334 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 7.1e-59
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MTGSAAPDSATV-----------ASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAV 60
           M  SAAPDS T            A+ A    GSSSA   V PVPKRA   EED+DVVDA 
Sbjct: 1   MADSAAPDSGTATISPPADTASPAAAAAATAGSSSAPTVVTPVPKRAWGDEEDDDVVDAG 60

Query: 61  NSFSAPLELTESLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYV 120
           +S SAP +  ESL+I E+  LEEPED NITA+    TPY+SA+TF DLNLSPELLKGLYV
Sbjct: 61  DSSSAPSDYMESLKIREEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPELLKGLYV 120

Query: 121 EVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCI 176
           E++FQKPSKIQAISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVDPNLK PQALCI
Sbjct: 121 EMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKVPQALCI 180

[Close]

BLAST of Sed0011256 vs. ExPASy TrEMBL
Match: A0A6J1IXW1 (DEAD-box ATP-dependent RNA helicase 38 OS=Cucurbita maxima OX=3661 GN=LOC111481623 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 4.3e-56
Identity = 121/178 (67.98%), Postives = 142/178 (79.78%), Query Frame = 0


Query: 1   MTGSAAPDSATVASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAVNSFSAPLELTE 60
           M   AAPDS T  +++     +++  P V PVPKRA   EED+DV DA +S SAP E  E
Sbjct: 1   MADPAAPDSTTSNASSAASADAATTPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPSEYME 60

Query: 61  SLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQ 120
           SL+I+++  LEEPED NITA+    TPY+SA+TF DLNLSPE+LKGLYVE++FQKPSKIQ
Sbjct: 61  SLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSKIQ 120

Query: 121 AISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           AISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+Q
Sbjct: 121 AISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQ 178

[Close]

BLAST of Sed0011256 vs. ExPASy TrEMBL
Match: A0A6J1F4Z0 (DEAD-box ATP-dependent RNA helicase 38 OS=Cucurbita moschata OX=3662 GN=LOC111442167 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.6e-55
Identity = 123/180 (68.33%), Postives = 141/180 (78.33%), Query Frame = 0


Query: 1   MTGSAAPDSAT--VASTAIFYGGSSSASPEVAPVPKRA---EEDEDVVDAVNSFSAPLEL 60
           M   AAPDS T   +S A     S++  P V PVPKRA   EED+DV D  +S SAP E 
Sbjct: 1   MADPAAPDSTTSNASSAAAAVAVSATTPPVVTPVPKRAWGDEEDDDVGDVGDSSSAPSEY 60

Query: 61  TESLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSK 120
            ESL+I+++  LEEPED NITA+    TPY+SA+TF DLNLSPE+LKGLYVE++FQKPSK
Sbjct: 61  MESLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSK 120

Query: 121 IQAISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           IQAISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+Q
Sbjct: 121 IQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQ 180

[Close]

BLAST of Sed0011256 vs. ExPASy TrEMBL
Match: A0A0A0KR39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G308770 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.4e-54
Identity = 125/181 (69.06%), Postives = 142/181 (78.45%), Query Frame = 0


Query: 1   MTGSAAPDSAT--VASTAIFYGGSSSASP-EVAPVPKRA---EEDEDVVDAVNSFSAPLE 60
           M   AAPDS T   A+ A     SSSA P  + PVPKRA   EED+DVV++ +S SAP E
Sbjct: 1   MADHAAPDSTTSLSAAAAATTADSSSAPPIVITPVPKRAWGDEEDDDVVESGDSSSAPSE 60

Query: 61  LTESLEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPS 120
             ESL+I++DT LEEP D NITA+    TPY+SA+TF DLNLS ELLKGLYVE++F KPS
Sbjct: 61  YLESLKIQDDTNLEEPIDSNITAVTTGDTPYSSASTFEDLNLSKELLKGLYVEMKFHKPS 120

Query: 121 KIQAISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAI 176
           KIQAISLPMILTPP+K LIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+
Sbjct: 121 KIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAM 180

[Close]

BLAST of Sed0011256 vs. ExPASy TrEMBL
Match: A0A5D3DNK6 (DEAD-box ATP-dependent RNA helicase 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003240 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.6e-53
Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 0


Query: 6   APDSATVAST--AIFYGGSSSASPEVAPVPKRA---EEDEDVV-DAVNSFSAPLELTESL 65
           APDS +  S+  A      S+A   V+P+PKR+   EED+DVV D   S S P E+ ESL
Sbjct: 7   APDSTSNGSSCDATITHSPSTAPFVVSPMPKRSWGNEEDDDVVADTGGSSSVPSEVMESL 66

Query: 66  EIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAI 125
           +IE++T LEEP D NITA+    TPY+SA+TF DLNLS ELLKGLYVE++F KPSKIQAI
Sbjct: 67  KIEDETTLEEPIDSNITAVTTGDTPYSSASTFEDLNLSKELLKGLYVEMRFHKPSKIQAI 126

Query: 126 SLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQVRDS 180
           SLPMILTPP+KHLIAQAHNGSGKTTCFVLGM+SRVD NLKAPQA CIC TRELA+QVR S
Sbjct: 127 SLPMILTPPYKHLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQVRTS 186

[Close]

BLAST of Sed0011256 vs. TAIR 10
Match: AT3G53110.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 9.5e-48
Identity = 102/177 (57.63%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 2   TGSAAPDSATVASTAIFYGGSSSASPEVAPVPKR---AEEDEDVVDAVNSFSAPLELTES 61
           T    P     +S++     +S+   E     K+    E+D+D  +AV+  ++   L+  
Sbjct: 4   TVEKVPTVVESSSSSTVEASNSAEKTEPTTEKKKWGDVEDDDDEEEAVSELNS---LSIK 63

Query: 62  LEIEEDTFLEEPEDCNITAIPFNGTPYTSATTFHDLNLSPELLKGLYVEVQFQKPSKIQA 121
            E + D+ LEEPED NI A+    TPYTSA+ F DLNLSPEL+KGLYVE++F+KPSKIQA
Sbjct: 64  EEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQA 123

Query: 122 ISLPMILTPPHKHLIAQAHNGSGKTTCFVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           ISLPMI+TPPHKHLIAQAHNGSGKTTCFVLGM+SRVDP L+ PQALCIC TRELA Q
Sbjct: 124 ISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQ 177

[Close]

BLAST of Sed0011256 vs. TAIR 10
Match: AT3G61240.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 86  TSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTC 145
           T    F D  L  +LLKG+Y E  F+KPS IQ  S+P+ LT     ++A+A NG+GKT  
Sbjct: 121 TKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALT--GSDILARAKNGTGKTGA 180

Query: 146 FVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           F + ++ ++DPN    QA+ +  TRELA+Q
Sbjct: 181 FCIPVLEKIDPNNNVIQAMILVPTRELALQ 207

[Close]

BLAST of Sed0011256 vs. TAIR 10
Match: AT3G61240.2 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 86  TSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTC 145
           T    F D  L  +LLKG+Y E  F+KPS IQ  S+P+ LT     ++A+A NG+GKT  
Sbjct: 121 TKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALT--GSDILARAKNGTGKTGA 180

Query: 146 FVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           F + ++ ++DPN    QA+ +  TRELA+Q
Sbjct: 181 FCIPVLEKIDPNNNVIQAMILVPTRELALQ 207

[Close]

BLAST of Sed0011256 vs. TAIR 10
Match: AT2G45810.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 86  TSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTC 145
           T    F D  L  +LL+G+Y E  F+KPS IQ  S+P+ LT     ++A+A NG+GKT  
Sbjct: 151 TKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALT--GSDILARAKNGTGKTGA 210

Query: 146 FVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           F +  + ++DP     QA+ +  TRELA+Q
Sbjct: 211 FCIPTLEKIDPENNVIQAVILVPTRELALQ 237

[Close]

BLAST of Sed0011256 vs. TAIR 10
Match: AT4G00660.2 (RNAhelicase-like 8 )

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 86  TSATTFHDLNLSPELLKGLYVEVQFQKPSKIQAISLPMILTPPHKHLIAQAHNGSGKTTC 145
           T    F D  L  ELL G+Y E  F++PS IQ  S+P+ LT   + ++A+A NG+GKT  
Sbjct: 128 TKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALT--GRDILARAKNGTGKTAA 187

Query: 146 FVLGMMSRVDPNLKAPQALCICHTRELAIQ 176
           F + ++ ++D +    QA+ I  TRELA+Q
Sbjct: 188 FCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214

The following BLAST results are available for this feature:

BLAST of Sed0011256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144714.1	1.5e-58	69.84	DEAD-box ATP-dependent RNA helicase 38 [Momordica charantia]	[more]
XP_038906287.1	5.2e-56	70.27	DEAD-box ATP-dependent RNA helicase 38 [Benincasa hispida] >XP_038906288.1 DEAD-...	[more]
XP_038876100.1	6.8e-56	70.22	DEAD-box ATP-dependent RNA helicase 38-like [Benincasa hispida]	[more]
XP_022982922.1	8.9e-56	67.98	DEAD-box ATP-dependent RNA helicase 38 [Cucurbita maxima]	[more]
XP_023527796.1	2.0e-55	67.98	DEAD-box ATP-dependent RNA helicase 38 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0011256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZG7	1.3e-46	57.63	DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana OX=3702 GN=RH38 P...	[more]
Q10RI7	6.9e-35	52.63	DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5AJD0	5.7e-21	53.76	ATP-dependent RNA helicase DBP5 OS=Candida albicans (strain SC5314 / ATCC MYA-28...	[more]
Q09747	2.2e-20	48.96	ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q54TF8	4.8e-20	52.69	ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum OX=44689 GN=helC PE...	[more]

BLAST of Sed0011256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CT40	7.1e-59	69.84	DEAD-box ATP-dependent RNA helicase 38 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1IXW1	4.3e-56	67.98	DEAD-box ATP-dependent RNA helicase 38 OS=Cucurbita maxima OX=3661 GN=LOC1114816...	[more]
A0A6J1F4Z0	1.6e-55	68.33	DEAD-box ATP-dependent RNA helicase 38 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A0A0KR39	2.4e-54	69.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G308770 PE=4 SV=1	[more]
A0A5D3DNK6	2.6e-53	67.78	DEAD-box ATP-dependent RNA helicase 38 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Sed0011256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53110.1	9.5e-48	57.63	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G61240.1	4.5e-13	43.33	DEA(D/H)-box RNA helicase family protein	[more]
AT3G61240.2	4.5e-13	43.33	DEA(D/H)-box RNA helicase family protein	[more]
AT2G45810.1	1.1e-11	41.11	DEA(D/H)-box RNA helicase family protein	[more]
AT4G00660.2	1.9e-11	41.11	RNAhelicase-like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 115..178 e-value: 2.3E-10 score: 40.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 79..191 e-value: 7.2E-26 score: 92.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 74..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..39
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 68..183
None	No IPR available	PANTHER	PTHR47958:SF31	DEAD-BOX HELICASE DBP80	coord: 68..183
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 89..118 score: 10.193189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011256.1	Sed0011256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
cellular_component	GO:0010494	cytoplasmic stress granule
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding