Sed0011251 (gene) Chayote v1

Overview
NameSed0011251
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG10: 937132 .. 937690 (-)
RNA-Seq ExpressionSed0011251
SyntenySed0011251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAGAGAGAGAAACACAAAGAAGAAGAAGAAGAAGAAGGGATTCTAGAGAGAGAAACAGAGACTAATCAATGGATGATGCAATGGCAAGGAAGAAGACGAAGAAGAAGAAGAGAATTACATTCGGTTTCCAGAAGCTAAGAGAGTCGTGGAAGTGGAAATTCCTCAGAGATTTCAAGTGGAAGAGATTGAATCTTCAGATCGGTTTCTTCGATGCGATCATCTTCCGAATCGTCTCTCTGTTCGAGGCCGTTGCGTTGGTCGGCATCGCCGGATTCTTCTTCCTCTGCTGTGGCGGCTGCCGCTTCTGATCGATTTGTATGTTCTTCGAAACTTCGTAATTAACCGATTTCTCTGTATGTAATTTTCATTTAAGTTTTCTTCCTCTTCTGTTTTGTTTTCTTAATTCGTTCGTTGATTGTTTCTGCCAAAGCTGTGAAAGCAAAATGTGAATTCCAATTTCTTTGATCCATTTGTCTCTCTTGTGGCTGCTGCCGCTTCTGATTGAATCTGCGAACTGAATCGATCGGTTCGTGTGTTCTTCGAAACTTCGTAATTA

mRNA sequence

TAGAAGAGAGAGAAACACAAAGAAGAAGAAGAAGAAGAAGGGATTCTAGAGAGAGAAACAGAGACTAATCAATGGATGATGCAATGGCAAGGAAGAAGACGAAGAAGAAGAAGAGAATTACATTCGGTTTCCAGAAGCTAAGAGAGTCGTGGAAGTGGAAATTCCTCAGAGATTTCAAGTGGAAGAGATTGAATCTTCAGATCGGTTTCTTCGATGCGATCATCTTCCGAATCGTCTCTCTGTTCGAGGCCGTTGCGTTGGTCGGCATCGCCGGATTCTTCTTCCTCTGCTGTGGCGGCTGCCGCTTCTGATCGATTTGTATGTTCTTCGAAACTTCGTAATTAACCGATTTCTCTGTATGTAATTTTCATTTAAGTTTTCTTCCTCTTCTGTTTTGTTTTCTTAATTCGTTCGTTGATTGTTTCTGCCAAAGCTGTGAAAGCAAAATGTGAATTCCAATTTCTTTGATCCATTTGTCTCTCTTGTGGCTGCTGCCGCTTCTGATTGAATCTGCGAACTGAATCGATCGGTTCGTGTGTTCTTCGAAACTTCGTAATTA

Coding sequence (CDS)

ATGGATGATGCAATGGCAAGGAAGAAGACGAAGAAGAAGAAGAGAATTACATTCGGTTTCCAGAAGCTAAGAGAGTCGTGGAAGTGGAAATTCCTCAGAGATTTCAAGTGGAAGAGATTGAATCTTCAGATCGGTTTCTTCGATGCGATCATCTTCCGAATCGTCTCTCTGTTCGAGGCCGTTGCGTTGGTCGGCATCGCCGGATTCTTCTTCCTCTGCTGTGGCGGCTGCCGCTTCTGA

Protein sequence

MDDAMARKKTKKKKRITFGFQKLRESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGFFFLCCGGCRF
Homology
BLAST of Sed0011251 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MDDAMARKKTKKKKRITFGFQKLRESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDA+ RKKTK  K+  F FQ+LR+SWKWKFL++FKWKRLNLQ+GFFDAIIFRIVSLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 VALVGIAGFFFLCCGGCRF 80
          VALVGIA FFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

BLAST of Sed0011251 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-26
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 1  MDDAMARKKTKKKKRITFGFQKLRESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDA+ RKKTKK++   F  Q+LR+SWKWKFL+DFKWKRLNL IGF DAIIFRI SLFEA
Sbjct: 1  MDDAIDRKKTKKRR--AFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 VALVGIAGFFFLCCGGCRF 80
          +AL+GIAGFFFLCCGGCRF
Sbjct: 61 IALIGIAGFFFLCCGGCRF 77

BLAST of Sed0011251 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MDDAMARKKTKKKKRITFGFQKLRESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDA+ RKKTKK++   F  Q+LR+SWKWKFL+DFKWKRLNL IGF DAIIFRI SLFEA
Sbjct: 1  MDDAIDRKKTKKRR--AFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 VALVGIAGFF 71
          +AL+GIAGFF
Sbjct: 61 IALIGIAGFF 68

BLAST of Sed0011251 vs. NCBI nr
Match: ESR62900.1 (hypothetical protein CICLE_v10017350mg [Citrus clementina])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 24 RESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGFFFLCCGGCRF 80
          RES +WKFL   KWKRLNLQI FFD ++F+IVS+FEAV LV  A FFFLCC GC F
Sbjct: 30 RESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATACFFFLCC-GCHF 82

BLAST of Sed0011251 vs. NCBI nr
Match: KDO78130.1 (hypothetical protein CISIN_1g036027mg [Citrus sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 24 RESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGFFFLCCGGCRF 80
          RES +WKFL   KWKRLNLQI FFD ++F+IVS+FEAV LV  A FFFLCC GC F
Sbjct: 32 RESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATACFFFLCC-GCHF 84

BLAST of Sed0011251 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MDDAMARKKTKKKKRITFGFQKLRESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDA+ RKKTK  K+  F FQ+LR+SWKWKFL++FKWKRLNLQ+GFFDAIIFRIVSLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 VALVGIAGFFFLCCGGCRF 80
          VALVGIA FFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

BLAST of Sed0011251 vs. ExPASy TrEMBL
Match: A0A067GHI9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 24 RESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGFFFLCCGGCRF 80
          RES +WKFL   KWKRLNLQI FFD ++F+IVS+FEAV LV  A FFFLCC GC F
Sbjct: 32 RESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATACFFFLCC-GCHF 84

BLAST of Sed0011251 vs. ExPASy TrEMBL
Match: V4UFE9 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 24 RESWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGFFFLCCGGCRF 80
          RES +WKFL   KWKRLNLQI FFD ++F+IVS+FEAV LV  A FFFLCC GC F
Sbjct: 30 RESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATACFFFLCC-GCHF 82

BLAST of Sed0011251 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 11 KKKKRITFGFQKLRESWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGF 70
          KK + I F   +++ +W+WKFL   FKWKRLNLQ+ F D ++FRI+S+FEA+ LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 71 FFLCCGGCRF 80
          F+LCC GC F
Sbjct: 64 FYLCC-GCHF 72

BLAST of Sed0011251 vs. ExPASy TrEMBL
Match: A0A061GEB5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 7   RKKTKKKKRITFG------FQKL--RESWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSL 66
           RK  KKKK +  G      F++L  +ESW+WKFL   FKWKRLN+Q+ F D ++FRI S+
Sbjct: 109 RKNKKKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDDVLFRIASV 168

Query: 67  FEAVALVGIAGFFFLCCGGCRF 80
            EA+ LV    FF+LCC GC F
Sbjct: 169 LEAIFLVATLCFFYLCC-GCHF 189

BLAST of Sed0011251 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 24 RESWKWKFL---RDFKWKRLNLQIGFFDAIIFRIVSLFEAVALVGIAGFFFLCCGGCRF 80
          +E  + KFL      KWKRLNL++ F + + +RI+S+ EA+ LV    FFFLCC GC+F
Sbjct: 14 KERTRLKFLGLGGGLKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAFFFLCC-GCKF 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49382.12.7e-2781.01hypothetical protein Csa_004198 [Cucumis sativus][more]
KAG7034699.15.2e-2678.48hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581417.11.2e-1975.71hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori... [more]
ESR62900.12.0e-0969.64hypothetical protein CICLE_v10017350mg [Citrus clementina][more]
KDO78130.12.0e-0969.64hypothetical protein CISIN_1g036027mg [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLX91.3e-2781.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1[more]
A0A067GHI99.5e-1069.64Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1[more]
V4UFE99.5e-1069.64Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 ... [more]
A0A7N2LSF82.1e-0952.86Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A061GEB52.8e-0951.22Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G46295.11.3e-0647.46unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726:SF3TRANSMEMBRANE PROTEINcoord: 13..79
NoneNo IPR availablePANTHERPTHR33726TRANSMEMBRANE PROTEINcoord: 13..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011251.1Sed0011251.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane