Sed0011239 (gene) Chayote v1

Overview


Name	Sed0011239
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein
Location	LG04: 14447240 .. 14448104 (+)
RNA-Seq Expression	Sed0011239
Synteny	Sed0011239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAGCACCAAAAACAAATAATATGAATAGCAATCCCTTTTCTTAGTTTTCTCTTTCTCAATAATTTTGACTCCTTGCTTTGATTTCTCTTCTTCTTCTTCTTCTCTCAAACAATTCCCTCTTTGTTTCATCTCCCAAATCTTTGTAACTGATGACTCGCGATATGAGAGCTCTGGCCGAAAACACATCGGCGCCACCGCCTGAATCGGACTTCGCCGTGATTCTGGCGGCGCTGCTGTGTGCCCTAATTTCCATTGTGGGGCTCATAGCGGTGGCTCGGTGCACGTGGCTCCGCCGTGGCGGCGGTGGGGGAGCGGCGTCGGCGAACAGGGGATTGAAAAAGAAAACCCTGCAATCGCTGCCCAAATTCACGTACAGAGCCTCGCCGGAGCCCGGCGGAGAGGGGGAATGCGCGATCTGCCTGGCGGAGTTCACGGCGGGGGAGGAGATCCGGCGGCTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTGGACACGTGGCTGGGGTCCCACTCGTCCTGCCCTTCTTGCCGCCAGATCCTGGTTTTGGGCAGGTGCCAGAGGTGCGGGCAGTTGCCGGCGGCCGTGCACGGCGGCGCTCAGGAGGAGGAGGAGGAGGAGCAGAAGAGGAGGGAAGATAACAATGCTAACAACACTGGTGTGGGATTTTTGCCTTGACTCTGCTCTGACTTTTAGTCAACGCTAGTTCATTCTGATTTTTCTTTGTTGTGAGAAAAACAAATGTTTAATAATGTAAATTGAAGCTTTGGAATGGCGTTATTTGTGATACTGCCTTACTTCATCACACTTCAAAAAAGTATAATTATGTGTCAAAATCTTCTCATTTTTTCAAATTCTT

mRNA sequence

AAAATAGCACCAAAAACAAATAATATGAATAGCAATCCCTTTTCTTAGTTTTCTCTTTCTCAATAATTTTGACTCCTTGCTTTGATTTCTCTTCTTCTTCTTCTTCTCTCAAACAATTCCCTCTTTGTTTCATCTCCCAAATCTTTGTAACTGATGACTCGCGATATGAGAGCTCTGGCCGAAAACACATCGGCGCCACCGCCTGAATCGGACTTCGCCGTGATTCTGGCGGCGCTGCTGTGTGCCCTAATTTCCATTGTGGGGCTCATAGCGGTGGCTCGGTGCACGTGGCTCCGCCGTGGCGGCGGTGGGGGAGCGGCGTCGGCGAACAGGGGATTGAAAAAGAAAACCCTGCAATCGCTGCCCAAATTCACGTACAGAGCCTCGCCGGAGCCCGGCGGAGAGGGGGAATGCGCGATCTGCCTGGCGGAGTTCACGGCGGGGGAGGAGATCCGGCGGCTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTGGACACGTGGCTGGGGTCCCACTCGTCCTGCCCTTCTTGCCGCCAGATCCTGGTTTTGGGCAGGTGCCAGAGGTGCGGGCAGTTGCCGGCGGCCGTGCACGGCGGCGCTCAGGAGGAGGAGGAGGAGGAGCAGAAGAGGAGGGAAGATAACAATGCTAACAACACTGGTGTGGGATTTTTGCCTTGACTCTGCTCTGACTTTTAGTCAACGCTAGTTCATTCTGATTTTTCTTTGTTGTGAGAAAAACAAATGTTTAATAATGTAAATTGAAGCTTTGGAATGGCGTTATTTGTGATACTGCCTTACTTCATCACACTTCAAAAAAGTATAATTATGTGTCAAAATCTTCTCATTTTTTCAAATTCTT

Coding sequence (CDS)

ATGACTCGCGATATGAGAGCTCTGGCCGAAAACACATCGGCGCCACCGCCTGAATCGGACTTCGCCGTGATTCTGGCGGCGCTGCTGTGTGCCCTAATTTCCATTGTGGGGCTCATAGCGGTGGCTCGGTGCACGTGGCTCCGCCGTGGCGGCGGTGGGGGAGCGGCGTCGGCGAACAGGGGATTGAAAAAGAAAACCCTGCAATCGCTGCCCAAATTCACGTACAGAGCCTCGCCGGAGCCCGGCGGAGAGGGGGAATGCGCGATCTGCCTGGCGGAGTTCACGGCGGGGGAGGAGATCCGGCGGCTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTGGACACGTGGCTGGGGTCCCACTCGTCCTGCCCTTCTTGCCGCCAGATCCTGGTTTTGGGCAGGTGCCAGAGGTGCGGGCAGTTGCCGGCGGCCGTGCACGGCGGCGCTCAGGAGGAGGAGGAGGAGGAGCAGAAGAGGAGGGAAGATAACAATGCTAACAACACTGGTGTGGGATTTTTGCCTTGA

Protein sequence

MTRDMRALAENTSAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGGAASANRGLKKKTLQSLPKFTYRASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVGFLP

Homology

[Close]

BLAST of Sed0011239 vs. NCBI nr
Match: XP_023539225.1 (RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 143/196 (72.96%), Postives = 150/196 (76.53%), Query Frame = 0


Query: 1   MTRDMRALAENTS-------APPP-----ESDFAVILAALLCALISIVGLIAVARCTWLR 60
           MTR  +ALA NTS       APPP     ESDF VILAALLCALI +VGLIAVARC WLR
Sbjct: 41  MTRYFQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100

Query: 61  R----GGGGGAASANRGLKKKTLQSLPKFTYRASPEPGGEG----ECAICLAEFTAGEEI 120
           R    GG G  ASANRGLKKK LQSLPKFTYRAS   GGEG    ECAICLAEF  GEEI
Sbjct: 101 RGSNSGGAGNQASANRGLKKKILQSLPKFTYRASGS-GGEGKFAAECAICLAEFLDGEEI 160

Query: 121 RRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQK 177
           R+LPQCGHCFHVSCVDTWL SHSSCPSCRQILV+ RCQ+CG+ PA VHGG     EEEQK
Sbjct: 161 RQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGG-DHNNEEEQK 220

[Close]

BLAST of Sed0011239 vs. NCBI nr
Match: XP_022933605.1 (RING-H2 finger protein ATL8 [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 5.1e-66
Identity = 140/195 (71.79%), Postives = 148/195 (75.90%), Query Frame = 0


Query: 1   MTRDMRALAENTS-------APPP-----ESDFAVILAALLCALISIVGLIAVARCTWLR 60
           MTR  +ALA NTS       APPP     ESDF VILAALLCALI +VGLIAVARC WLR
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RGGGGGA----ASANRGLKKKTLQSLPKFTYRASPEPGGE---GECAICLAEFTAGEEIR 120
           RG  GG     ASANRGLKKK LQSLPKF YRAS   G E    ECAICLAEF  GEEIR
Sbjct: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIR 120

Query: 121 RLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKR 177
           +LPQCGHCFHVSCVDTWL SHSSCPSCRQILV+ RCQ+CG+ PA VHGG    +EEEQKR
Sbjct: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGG-DHNDEEEQKR 180

[Close]

BLAST of Sed0011239 vs. NCBI nr
Match: KAG6596287.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 140/195 (71.79%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 1   MTRDMRALAENTS-------APPP-----ESDFAVILAALLCALISIVGLIAVARCTWLR 60
           MTR  +ALA NTS       APPP     ESDF VILAALLCALI +VGLIAVARC WLR
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RGGGGGA----ASANRGLKKKTLQSLPKFTYRASPEPGGE---GECAICLAEFTAGEEIR 120
           RG  GG     ASANRGLKKK LQSLPKF YRAS   G E    ECAICLAEF  GEEIR
Sbjct: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIR 120

Query: 121 RLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKR 177
           +LPQCGHCFHVSCVDTWL SHSSCPSCRQILV+ RCQ+CG+ PA VHGG     EEEQKR
Sbjct: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGG-DHNTEEEQKR 180

[Close]

BLAST of Sed0011239 vs. NCBI nr
Match: XP_022971423.1 (RING-H2 finger protein ATL8 [Cucurbita maxima])

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-65
Identity = 141/196 (71.94%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 1   MTRDMRALAENTS-------APPP-----ESDFAVILAALLCALISIVGLIAVARCTWLR 60
           MTR ++ALA NTS       APPP     ESDF VILAALLCALI +VGLIAVARC WLR
Sbjct: 41  MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100

Query: 61  RGGGGGA----ASANRGLKKKTLQSLPKFTYRASPEPGGEG----ECAICLAEFTAGEEI 120
           RG  GG     ASANRGLKKK LQSLPKF YRAS   GGEG    ECAICLAEF  GEEI
Sbjct: 101 RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGS-GGEGKFAAECAICLAEFLDGEEI 160

Query: 121 RRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQK 177
           R+LPQCGHCFHVSCVDTWL SHSSCPSCRQILV+ RCQ+CG  PA VHG      EEEQK
Sbjct: 161 RQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGD-DHNNEEEQK 220

[Close]

BLAST of Sed0011239 vs. NCBI nr
Match: KAG7027836.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-62
Identity = 127/166 (76.51%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 18  ESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGGA----ASANRGLKKKTLQSLPKF 77
           ESDF VILAALLCALI +VGLIAVARC WLRRG  GG     ASANRGLKKK LQSLPKF
Sbjct: 2   ESDFVVILAALLCALICMVGLIAVARCAWLRRGNNGGGAGNQASANRGLKKKILQSLPKF 61

Query: 78  TYRASPEPGGE---GECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQ 137
            YRAS   G E    ECAICLAEF  GEEIR+LPQCGHCFHVSCVDTWL SHSSCPSCRQ
Sbjct: 62  AYRASGSGGEEKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQ 121

Query: 138 ILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVGFLP 177
           ILV+ RCQ+CG+ PA VHGG     EEEQKRREDNN NN G+GFLP
Sbjct: 122 ILVVARCQKCGEFPAVVHGG-DHNTEEEQKRREDNNGNNRGLGFLP 166

[Close]

BLAST of Sed0011239 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-45
Identity = 100/183 (54.64%), Postives = 121/183 (66.12%), Query Frame = 0


Query: 9   AENTSAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG-------------- 68
           A + S     SD  VILAALLCALI ++GLIAV+RC WLRR   G               
Sbjct: 18  AIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPP 77

Query: 69  AASANRGLKKKTLQSLPKFTYR-ASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVS 128
            A+AN+GLKKK LQSLPK T+   SPE     ECAICLAEF+AG+E+R LPQCGH FHV+
Sbjct: 78  VAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVA 137

Query: 129 CVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVG 177
           C+DTWLGSHSSCPSCRQILV+ RC +CG LP +   G + E E E + ++  +  N+   
Sbjct: 138 CIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRIKQGEDDPNS--- 197

[Close]

BLAST of Sed0011239 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-43
Identity = 94/166 (56.63%), Postives = 111/166 (66.87%), Query Frame = 0


Query: 13  SAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG---------AASANRGLK 72
           ++PP  SD  +ILA LLCAL  I+GLIAV+RC WLRR               A+AN+GLK
Sbjct: 20  ASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLK 79

Query: 73  KKTLQSLPKFTYRASPEPGGE-GECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSH 132
           KK L+SLPK TY     P  +  ECAICL EF AG+E+R LPQCGH FHVSC+DTWLGSH
Sbjct: 80  KKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSH 139

Query: 133 SSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNAN 169
           SSCPSCRQILV+ RC +CG LP +   G   E +   K+RED   N
Sbjct: 140 SSCPSCRQILVVTRCHKCGGLPGSSSSG--PEPDTRIKQREDGPDN 183

[Close]

BLAST of Sed0011239 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-40
Identity = 96/193 (49.74%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 1   MTRDMRALAENTSAPPP---------ESDFAVILAALLCALISIVGLIAVARCTWLRR-G 60
           MTR  R L   T+APPP         ESD  VIL+ALLCALI + GL AV RC WLRR  
Sbjct: 1   MTRPSRLL--ETAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFT 60

Query: 61  GGGGAASANRGLKKKTLQSLPKFTYR-------ASPEPGGEGECAICLAEFTAGEEIRRL 120
            GG + S N+GLKKK LQSLP+ T+        A+ E G   ECAICL +F  GEEIR L
Sbjct: 61  AGGDSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVL 120

Query: 121 PQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRRE 177
           P CGH FHV C+D WL S SSCPSCR+IL   RC RCG      H    E +++  + + 
Sbjct: 121 PLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCG------HASTAEMKDQAHRHQH 180

[Close]

BLAST of Sed0011239 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.2e-37
Identity = 96/207 (46.38%), Postives = 116/207 (56.04%), Query Frame = 0


Query: 1   MTRDMRALAENTSAPPP-------ESDFAVILAALLCALISIVGLIAVARCTWLRRGGG- 60
           MTR  R L   T++PPP       E+D  VIL+ALLCAL+ + GL AVARC WLRR  G 
Sbjct: 1   MTRSSRFL--GTASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGV 60

Query: 61  -----GGAASANRGLKKKTLQSLPKFTYRASPEPG-----------GEG----ECAICLA 120
                G A   N+GLKKK LQ+LPK TY AS               G+G    ECAIC+ 
Sbjct: 61  NPAAVGEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICIT 120

Query: 121 EFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQ 177
           EF+ GEEIR LP C H FHV+C+D WL S SSCPSCR+ILV  +C RCG      H    
Sbjct: 121 EFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGH-----HASTA 180

[Close]

BLAST of Sed0011239 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 18  ESDFAVILAALLCALISIVGLIAVARCTW-----LRRGGGGGAASANRGLKKKTLQSLPK 77
           +++  +ILAALLCALI  +GL ++ RC       L      G  +   GLKK+ L+  P 
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPV 90

Query: 78  FTYRASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQIL 134
             Y +        ECAICL EF  GE +R LP C H FH+SC+DTWL SHSSCP+CR  L
Sbjct: 91  AEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150

[Close]

BLAST of Sed0011239 vs. ExPASy TrEMBL
Match: A0A6J1F5B4 (RING-H2 finger protein ATL8 OS=Cucurbita moschata OX=3662 GN=LOC111440980 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 140/195 (71.79%), Postives = 148/195 (75.90%), Query Frame = 0


Query: 1   MTRDMRALAENTS-------APPP-----ESDFAVILAALLCALISIVGLIAVARCTWLR 60
           MTR  +ALA NTS       APPP     ESDF VILAALLCALI +VGLIAVARC WLR
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RGGGGGA----ASANRGLKKKTLQSLPKFTYRASPEPGGE---GECAICLAEFTAGEEIR 120
           RG  GG     ASANRGLKKK LQSLPKF YRAS   G E    ECAICLAEF  GEEIR
Sbjct: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIR 120

Query: 121 RLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKR 177
           +LPQCGHCFHVSCVDTWL SHSSCPSCRQILV+ RCQ+CG+ PA VHGG    +EEEQKR
Sbjct: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGG-DHNDEEEQKR 180

[Close]

BLAST of Sed0011239 vs. ExPASy TrEMBL
Match: A0A6J1I6T7 (RING-H2 finger protein ATL8 OS=Cucurbita maxima OX=3661 GN=LOC111470152 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.2e-65
Identity = 141/196 (71.94%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 1   MTRDMRALAENTS-------APPP-----ESDFAVILAALLCALISIVGLIAVARCTWLR 60
           MTR ++ALA NTS       APPP     ESDF VILAALLCALI +VGLIAVARC WLR
Sbjct: 41  MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100

Query: 61  RGGGGGA----ASANRGLKKKTLQSLPKFTYRASPEPGGEG----ECAICLAEFTAGEEI 120
           RG  GG     ASANRGLKKK LQSLPKF YRAS   GGEG    ECAICLAEF  GEEI
Sbjct: 101 RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGS-GGEGKFAAECAICLAEFLDGEEI 160

Query: 121 RRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQK 177
           R+LPQCGHCFHVSCVDTWL SHSSCPSCRQILV+ RCQ+CG  PA VHG      EEEQK
Sbjct: 161 RQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGD-DHNNEEEQK 220

[Close]

BLAST of Sed0011239 vs. ExPASy TrEMBL
Match: A0A5D3CJ22 (RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00120 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.4e-60
Identity = 128/183 (69.95%), Postives = 142/183 (77.60%), Query Frame = 0


Query: 1   MTRDMRALAENT-SAPPP-----ESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG 60
           M+  +RAL  NT SAPPP     ESDF VILAALLCALI +VGLIAVARC WLRR   G 
Sbjct: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR---GN 60

Query: 61  AASANRGLKKKTLQSLPKFTYRASPEPGG-EGECAICLAEFTAGEEIRRLPQCGHCFHVS 120
            ASANRGLKKK LQSLPKF Y+++   G    ECAICLAEF  GEEIR+LPQCGHCFHVS
Sbjct: 61  QASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVS 120

Query: 121 CVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVG 177
           CVDTWLG+HSSCPSCRQILV+ RCQ+CGQ PA V GGA +  EEE+   EDNN +N G+G
Sbjct: 121 CVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEV--EDNNNDNRGLG 178

[Close]

BLAST of Sed0011239 vs. ExPASy TrEMBL
Match: A0A1S3BKT0 (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103491102 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.4e-60
Identity = 128/183 (69.95%), Postives = 142/183 (77.60%), Query Frame = 0


Query: 1   MTRDMRALAENT-SAPPP-----ESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG 60
           M+  +RAL  NT SAPPP     ESDF VILAALLCALI +VGLIAVARC WLRR   G 
Sbjct: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR---GN 60

Query: 61  AASANRGLKKKTLQSLPKFTYRASPEPGG-EGECAICLAEFTAGEEIRRLPQCGHCFHVS 120
            ASANRGLKKK LQSLPKF Y+++   G    ECAICLAEF  GEEIR+LPQCGHCFHVS
Sbjct: 61  QASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVS 120

Query: 121 CVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVG 177
           CVDTWLG+HSSCPSCRQILV+ RCQ+CGQ PA V GGA +  EEE+   EDNN +N G+G
Sbjct: 121 CVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEV--EDNNNDNRGLG 178

[Close]

BLAST of Sed0011239 vs. ExPASy TrEMBL
Match: A0A0A0L622 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G000150 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.8e-59
Identity = 128/184 (69.57%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MTRDMRALAENT-SAPPP-----ESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG 60
           M+  +RAL  NT SAPPP     ESDF VILAALLCALI +VGLIAVARC WLRR   G 
Sbjct: 1   MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR---GN 60

Query: 61  AASANRGLKKKTLQSLPKFTYRASPEPGG-EGECAICLAEFTAGEEIRRLPQCGHCFHVS 120
            ASANRGLKKK LQSLPKF Y+++   G    ECAICLAEF  GEEIR+LPQCGHCFHVS
Sbjct: 61  QASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVS 120

Query: 121 CVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVH-GGAQEEEEEEQKRREDNNANNTGV 177
           CVDTWLG+HSSCPSCRQILV+ RCQ+CGQ PA V  GGA   EEEE +   +NN NN G+
Sbjct: 121 CVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNINNNNNNRGL 180

[Close]

BLAST of Sed0011239 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 184.5 bits (467), Expect = 7.4e-47
Identity = 100/183 (54.64%), Postives = 121/183 (66.12%), Query Frame = 0


Query: 9   AENTSAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG-------------- 68
           A + S     SD  VILAALLCALI ++GLIAV+RC WLRR   G               
Sbjct: 18  AIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPP 77

Query: 69  AASANRGLKKKTLQSLPKFTYR-ASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVS 128
            A+AN+GLKKK LQSLPK T+   SPE     ECAICLAEF+AG+E+R LPQCGH FHV+
Sbjct: 78  VAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVA 137

Query: 129 CVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNANNTGVG 177
           C+DTWLGSHSSCPSCRQILV+ RC +CG LP +   G + E E E + ++  +  N+   
Sbjct: 138 CIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRIKQGEDDPNS--- 197

[Close]

BLAST of Sed0011239 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-44
Identity = 94/166 (56.63%), Postives = 111/166 (66.87%), Query Frame = 0


Query: 13  SAPPPESDFAVILAALLCALISIVGLIAVARCTWLRRGGGGG---------AASANRGLK 72
           ++PP  SD  +ILA LLCAL  I+GLIAV+RC WLRR               A+AN+GLK
Sbjct: 20  ASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLK 79

Query: 73  KKTLQSLPKFTYRASPEPGGE-GECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSH 132
           KK L+SLPK TY     P  +  ECAICL EF AG+E+R LPQCGH FHVSC+DTWLGSH
Sbjct: 80  KKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSH 139

Query: 133 SSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRREDNNAN 169
           SSCPSCRQILV+ RC +CG LP +   G   E +   K+RED   N
Sbjct: 140 SSCPSCRQILVVTRCHKCGGLPGSSSSG--PEPDTRIKQREDGPDN 183

[Close]

BLAST of Sed0011239 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-41
Identity = 96/193 (49.74%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 1   MTRDMRALAENTSAPPP---------ESDFAVILAALLCALISIVGLIAVARCTWLRR-G 60
           MTR  R L   T+APPP         ESD  VIL+ALLCALI + GL AV RC WLRR  
Sbjct: 1   MTRPSRLL--ETAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFT 60

Query: 61  GGGGAASANRGLKKKTLQSLPKFTYR-------ASPEPGGEGECAICLAEFTAGEEIRRL 120
            GG + S N+GLKKK LQSLP+ T+        A+ E G   ECAICL +F  GEEIR L
Sbjct: 61  AGGDSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVL 120

Query: 121 PQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQEEEEEEQKRRE 177
           P CGH FHV C+D WL S SSCPSCR+IL   RC RCG      H    E +++  + + 
Sbjct: 121 PLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCG------HASTAEMKDQAHRHQH 180

[Close]

BLAST of Sed0011239 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-38
Identity = 96/207 (46.38%), Postives = 116/207 (56.04%), Query Frame = 0


Query: 1   MTRDMRALAENTSAPPP-------ESDFAVILAALLCALISIVGLIAVARCTWLRRGGG- 60
           MTR  R L   T++PPP       E+D  VIL+ALLCAL+ + GL AVARC WLRR  G 
Sbjct: 1   MTRSSRFL--GTASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGV 60

Query: 61  -----GGAASANRGLKKKTLQSLPKFTYRASPEPG-----------GEG----ECAICLA 120
                G A   N+GLKKK LQ+LPK TY AS               G+G    ECAIC+ 
Sbjct: 61  NPAAVGEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICIT 120

Query: 121 EFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVLGRCQRCGQLPAAVHGGAQ 177
           EF+ GEEIR LP C H FHV+C+D WL S SSCPSCR+ILV  +C RCG      H    
Sbjct: 121 EFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGH-----HASTA 180

[Close]

BLAST of Sed0011239 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 7.9e-25
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 18  ESDFAVILAALLCALISIVGLIAVARCTW-----LRRGGGGGAASANRGLKKKTLQSLPK 77
           +++  +ILAALLCALI  +GL ++ RC       L      G  +   GLKK+ L+  P 
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPV 90

Query: 78  FTYRASPEPGGEGECAICLAEFTAGEEIRRLPQCGHCFHVSCVDTWLGSHSSCPSCRQIL 134
             Y +        ECAICL EF  GE +R LP C H FH+SC+DTWL SHSSCP+CR  L
Sbjct: 91  AEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150

The following BLAST results are available for this feature:

BLAST of Sed0011239 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539225.1	1.3e-66	72.96	RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo]	[more]
XP_022933605.1	5.1e-66	71.79	RING-H2 finger protein ATL8 [Cucurbita moschata]	[more]
KAG6596287.1	1.1e-65	71.79	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022971423.1	2.5e-65	71.94	RING-H2 finger protein ATL8 [Cucurbita maxima]	[more]
KAG7027836.1	2.0e-62	76.51	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Sed0011239 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM69	1.0e-45	54.64	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q8LC69	2.8e-43	56.63	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
O22755	2.2e-40	49.74	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9ZT49	5.2e-37	46.38	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LZV8	1.1e-23	45.45	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of Sed0011239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5B4	2.5e-66	71.79	RING-H2 finger protein ATL8 OS=Cucurbita moschata OX=3662 GN=LOC111440980 PE=4 S...	[more]
A0A6J1I6T7	1.2e-65	71.94	RING-H2 finger protein ATL8 OS=Cucurbita maxima OX=3661 GN=LOC111470152 PE=4 SV=...	[more]
A0A5D3CJ22	3.4e-60	69.95	RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BKT0	3.4e-60	69.95	RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103491102 PE=4 SV=1	[more]
A0A0A0L622	3.8e-59	69.57	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G000150 P...	[more]

BLAST of Sed0011239 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20823.1	7.4e-47	54.64	RING/U-box superfamily protein	[more]
AT1G76410.1	2.0e-44	56.63	RING/U-box superfamily protein	[more]
AT2G17450.1	1.6e-41	49.74	RING-H2 finger A3A	[more]
AT4G35480.1	3.7e-38	46.38	RING-H2 finger A3B	[more]
AT5G01880.1	7.9e-25	45.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 87..128 e-value: 1.1E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 86..129 e-value: 1.1E-14 score: 54.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 87..129 score: 12.386007
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..133 e-value: 1.0E-23 score: 84.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..165
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 1..160
None	No IPR available	PANTHER	PTHR45798:SF61	E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED	coord: 1..160
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 66..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011239.1	Sed0011239.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane