Sed0011170 (gene) Chayote v1

Overview


Name	Sed0011170
Type	gene
Organism	Sechium edule (Chayote v1)
Description	oil body-associated protein 2B-like
Location	LG01: 16454606 .. 16455654 (+)
RNA-Seq Expression	Sed0011170
Synteny	Sed0011170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAGGCGTCCCTGCGGAATAAGGTTAAATCGGGTGTTTGGGTCAATCCTAGGATCCCCGAGACGGTGGCTAAGCCCGAGTTGGATACTATGGCTAAAACTTGTGGCAAGTTATGGTGCACCTGGCACTGGCAGCTTGATAGAGGTATTTTTTGTGGCTGGACATTTTTGTTTTTCAAAATTAACCCAAAAATAATAATTCCGTTAAAGTTTTTATCTAGGGAATTTTGCATGTATATAAAAAAATAGCAAAATATTTCCATCTATAGCACAAAATCCAAAATAATTTCATTTGTAGCAGAAAATTCAAATTGATTTCTATCACTTGTCGAGTTCTATTAGTGATAGAATTCAATCAATGATAGACTCATTCTATCACTGCTTAAGTTTTCTATTAGTGATAGAAATCTAAATTGAGTTCTATCACTAGGTGAGTGATAGAAATAAATATGTTATAGATGAATTATTTTAAAAATTATACTACAAATATAATACAAGAGGTAGAATATGTTGCTGATGGTAAATTCTCTTTTATCTAATATTAATCTATCTTTTTAAAAATTAGCAGTTTGCTTTGCAAGAGCGGTACGGTAATGGTAGGTAATAAAGTAGTTTGCTAAGAGCGGTGGGGCGAAGGAATCACCAACCCATAAAAACACAAAAATAAAGTTTTTTTTAATTAAAATTAAAAAGTTTTGAACATAATATATGTATTATATTAAATTGGTTTATTCTCGAAAAAAATATATATATGAAATGTAGTTTAAATTTTTATTTTTTATTTTTTTTAAGTAAAGCGGTAGGGCAATTGGGAGAATCACTTTAGTTTTCAAAAGTCAAAATCAAAGCAAGAAATTCAAGAAAAAAAAAATAAGTAAAGAAAGAGACTAGTTTAATTTTCAAAAACTAAAAAAACCCAATTTATTTTGAAAATAAATAGTATGGTAGAGAAATTGGAAGAGAAATACTATATAATAATTATAATAATAATAGTAGTAGTGGTAATAATAAATGAAGCCTGTTTGAAGAGATGGGGAGAGAATTAG

mRNA sequence

ATGTTTGAGGCGTCCCTGCGGAATAAGGTTAAATCGGGTGTTTGGGTCAATCCTAGGATCCCCGAGACGGTGGCTAAGCCCGAGTTGGATACTATGGCTAAAACTTGTGGCAAGTTATGGTGCACCTGGCACTGGCAGCTTGATAGAGAGAAATTGGAAGAGAAATACTATATAATAATTATAATAATAATAGTAGTAGTGGTAATAATAAATGAAGCCTGTTTGAAGAGATGGGGAGAGAATTAG

Coding sequence (CDS)

ATGTTTGAGGCGTCCCTGCGGAATAAGGTTAAATCGGGTGTTTGGGTCAATCCTAGGATCCCCGAGACGGTGGCTAAGCCCGAGTTGGATACTATGGCTAAAACTTGTGGCAAGTTATGGTGCACCTGGCACTGGCAGCTTGATAGAGAGAAATTGGAAGAGAAATACTATATAATAATTATAATAATAATAGTAGTAGTGGTAATAATAAATGAAGCCTGTTTGAAGAGATGGGGAGAGAATTAG

Protein sequence

MFEASLRNKVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDREKLEEKYYIIIIIIIVVVVIINEACLKRWGEN

Homology

[Close]

BLAST of Sed0011170 vs. NCBI nr
Match: XP_022140108.1 (oil body-associated protein 2A-like isoform X1 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 8   NKVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++VKSG+WVNPRIP+++A+PELD MAKT GK WCT  WQLDR
Sbjct: 122 HEVKSGLWVNPRIPDSIARPELDDMAKTYGKFWCT--WQLDR 161

[Close]

BLAST of Sed0011170 vs. NCBI nr
Match: XP_022140109.1 (oil body-associated protein 2A-like isoform X2 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 8   NKVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++VKSG+WVNPRIP+++A+PELD MAKT GK WCT  WQLDR
Sbjct: 120 HEVKSGLWVNPRIPDSIARPELDDMAKTYGKFWCT--WQLDR 159

[Close]

BLAST of Sed0011170 vs. NCBI nr
Match: XP_021749337.1 (oil body-associated protein 2A-like [Chenopodium quinoa])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDREKL 53
           ++KSG+WVNPR+PE VAKPELD +AKT GK WCT  WQ DR  L
Sbjct: 114 EIKSGLWVNPRVPEAVAKPELDKLAKTYGKFWCT--WQTDRGDL 155

[Close]

BLAST of Sed0011170 vs. NCBI nr
Match: XP_021735092.1 (oil body-associated protein 2A-like [Chenopodium quinoa] >XP_021765249.1 oil body-associated protein 2A-like [Chenopodium quinoa])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDREKL 53
           ++KSG+WVNPR+PE VAKPELD +AKT GK WCT  WQ DR  L
Sbjct: 114 EIKSGLWVNPRVPEAVAKPELDKLAKTYGKFWCT--WQTDRGDL 155

[Close]

BLAST of Sed0011170 vs. NCBI nr
Match: XP_021835466.1 (oil body-associated protein 2A [Spinacia oleracea])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++KSG+WVNPR+PE VAKPELD +AKT GK WCT  WQ DR
Sbjct: 114 EIKSGLWVNPRVPEAVAKPELDKLAKTYGKFWCT--WQTDR 152

[Close]

BLAST of Sed0011170 vs. ExPASy Swiss-Prot
Match: Q9C7N3 (Oil body-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=OBAP2C PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +VKSG W  PR+PE VA PEL  +AKT GK WCT  WQ+DR
Sbjct: 114 EVKSGSWAYPRLPEVVAAPELKNIAKTYGKFWCT--WQIDR 152

[Close]

BLAST of Sed0011170 vs. ExPASy Swiss-Prot
Match: Q941A4 (Oil body-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=OBAP2A PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-07
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++++G+ V PR+PE VAK EL+ +AKT GK WCT  WQ DR
Sbjct: 124 EIQTGLLVTPRVPELVAKTELENIAKTYGKFWCT--WQTDR 162

[Close]

BLAST of Sed0011170 vs. ExPASy Swiss-Prot
Match: Q1PE68 (Oil body-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=OBAP2B PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +++  + V PR+PE VAKPEL  +AK+ GK WCT  WQ+DR
Sbjct: 124 EIQMALLVTPRVPELVAKPELKNLAKSYGKFWCT--WQIDR 162

[Close]

BLAST of Sed0011170 vs. ExPASy Swiss-Prot
Match: B4FFK9 (Oil body-associated protein 2A OS=Zea mays OX=4577 GN=OBAP2A PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-06
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 8   NKVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +++KSG+W +P +   + K ELD MA T GK WCT  WQ+DR
Sbjct: 127 HEIKSGLWTSPHVAGLLEKAELDHMAATFGKFWCT--WQVDR 166

[Close]

BLAST of Sed0011170 vs. ExPASy Swiss-Prot
Match: B6UI56 (Oil body-associated protein 2B OS=Zea mays OX=4577 GN=OBAP2B PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +VK+G+W +  +PE +   E+ ++A+T GK WCT  WQ DR
Sbjct: 125 EVKAGLWTDVGVPEALQSSEMASLARTYGKFWCT--WQADR 163

[Close]

BLAST of Sed0011170 vs. ExPASy TrEMBL
Match: A0A6J1CEU0 (oil body-associated protein 2A-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010844 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 8   NKVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++VKSG+WVNPRIP+++A+PELD MAKT GK WCT  WQLDR
Sbjct: 120 HEVKSGLWVNPRIPDSIARPELDDMAKTYGKFWCT--WQLDR 159

[Close]

BLAST of Sed0011170 vs. ExPASy TrEMBL
Match: A0A6J1CH91 (oil body-associated protein 2A-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010844 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 8   NKVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++VKSG+WVNPRIP+++A+PELD MAKT GK WCT  WQLDR
Sbjct: 122 HEVKSGLWVNPRIPDSIARPELDDMAKTYGKFWCT--WQLDR 161

[Close]

BLAST of Sed0011170 vs. ExPASy TrEMBL
Match: A0A803NEE6 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-09
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDREKL 53
           ++KSG+WVNPR+PE VAKPELD +AKT GK WCT  WQ DR  L
Sbjct: 114 EIKSGLWVNPRVPEAVAKPELDKLAKTYGKFWCT--WQTDRGDL 155

[Close]

BLAST of Sed0011170 vs. ExPASy TrEMBL
Match: A0A803NDZ3 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-09
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDREKL 53
           ++KSG+WVNPR+PE VAKPELD +AKT GK WCT  WQ DR  L
Sbjct: 114 EIKSGLWVNPRVPEAVAKPELDKLAKTYGKFWCT--WQTDRGDL 155

[Close]

BLAST of Sed0011170 vs. ExPASy TrEMBL
Match: A0A067GH18 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039930mg PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +VKSG+WVNPR+PE + +PELD MAKT GK WCT  WQ+DR
Sbjct: 122 EVKSGLWVNPRVPEMIGRPELDNMAKTYGKFWCT--WQVDR 160

[Close]

BLAST of Sed0011170 vs. TAIR 10
Match: AT1G29680.1 (Protein of unknown function (DUF1264) )

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-10
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +VKSG W  PR+PE VA PEL  +AKT GK WCT  WQ+DR
Sbjct: 114 EVKSGSWAYPRLPEVVAAPELKNIAKTYGKFWCT--WQIDR 152

[Close]

BLAST of Sed0011170 vs. TAIR 10
Match: AT5G45690.1 (Protein of unknown function (DUF1264) )

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           ++++G+ V PR+PE VAK EL+ +AKT GK WCT  WQ DR
Sbjct: 124 EIQTGLLVTPRVPELVAKTELENIAKTYGKFWCT--WQTDR 162

[Close]

BLAST of Sed0011170 vs. TAIR 10
Match: AT4G18920.1 (Protein of unknown function (DUF1264) )

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-08
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 9   KVKSGVWVNPRIPETVAKPELDTMAKTCGKLWCTWHWQLDR 50
           +++  + V PR+PE VAKPEL  +AK+ GK WCT  WQ+DR
Sbjct: 124 EIQMALLVTPRVPELVAKPELKNLAKSYGKFWCT--WQIDR 162

The following BLAST results are available for this feature:

BLAST of Sed0011170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140108.1	3.4e-09	71.43	oil body-associated protein 2A-like isoform X1 [Momordica charantia]	[more]
XP_022140109.1	3.4e-09	71.43	oil body-associated protein 2A-like isoform X2 [Momordica charantia]	[more]
XP_021749337.1	1.0e-08	68.18	oil body-associated protein 2A-like [Chenopodium quinoa]	[more]
XP_021735092.1	1.0e-08	68.18	oil body-associated protein 2A-like [Chenopodium quinoa] >XP_021765249.1 oil bod...	[more]
XP_021835466.1	1.3e-08	70.73	oil body-associated protein 2A [Spinacia oleracea]	[more]

BLAST of Sed0011170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7N3	1.4e-08	63.41	Oil body-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=OBAP2C PE=1 SV...	[more]
Q941A4	5.7e-07	56.10	Oil body-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=OBAP2A PE=2 SV...	[more]
Q1PE68	1.3e-06	53.66	Oil body-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=OBAP2B PE=2 SV...	[more]
B4FFK9	4.8e-06	50.00	Oil body-associated protein 2A OS=Zea mays OX=4577 GN=OBAP2A PE=2 SV=1	[more]
B6UI56	1.2e-04	43.90	Oil body-associated protein 2B OS=Zea mays OX=4577 GN=OBAP2B PE=2 SV=1	[more]

BLAST of Sed0011170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEU0	1.7e-09	71.43	oil body-associated protein 2A-like isoform X2 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1CH91	1.7e-09	71.43	oil body-associated protein 2A-like isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A803NEE6	4.8e-09	68.18	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803NDZ3	4.8e-09	68.18	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A067GH18	1.1e-08	68.29	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039930mg PE=3 SV=1	[more]

BLAST of Sed0011170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29680.1	9.6e-10	63.41	Protein of unknown function (DUF1264)	[more]
AT5G45690.1	4.1e-08	56.10	Protein of unknown function (DUF1264)	[more]
AT4G18920.1	9.0e-08	53.66	Protein of unknown function (DUF1264)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010686	Oil body-associated protein-like	PFAM	PF06884	DUF1264	coord: 9..46 e-value: 1.7E-6 score: 27.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011170.1	Sed0011170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity