Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAGATTCAACTTTCCACAAAAAAAAGTGTTAAAAAACAGTAAAAAATAGTAGTTTCAGCTCATTTATATAGTTCAACCCCCAAGGGAGACTGATGGTTTTATGTGACAAAAACAGAACCCACATTTCAAATGCCGGGGTTCGGTGTTTTCCCTCTCGGTAGCTGTTTCGATGGCTGCCGAGACCACGCTCAGGGGTCTGGATTCGGCACGCGAATATGGAACTCGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACAAGCCAGGAAGGAGTATGAATAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAGTTCATCAGTCTTGAAGATTTAAGGGAGTTTTCTGAGATCAGAATCTTTAGAGATCATCAGCGCGGTTGCGTGTCGGTTCGGAAGAAACCGAGGCCTGATTTTTGCTGATTCTTAAATACTAAACCATGTTGCGTGTCTAAACTTTTGTAGCTTTTATATGAATGTTGTTCTTGTTTTTTTTGAGTCTGTAATGCTGTTGCCAAACTGTCTTTCCCCTGTTTCCTTGTTTTGGTTTGGAATTGAAGAAAATCAGATGGCATTATTGGTGGTGTGCTTTTAAACACCCAGAATTGTTTGTTTCTTTGATTTTGATTTCTAGTCGAT
mRNA sequence
ATCAGATTCAACTTTCCACAAAAAAAAGTGTTAAAAAACAGTAAAAAATAGTAGTTTCAGCTCATTTATATAGTTCAACCCCCAAGGGAGACTGATGGTTTTATGTGACAAAAACAGAACCCACATTTCAAATGCCGGGGTTCGGTGTTTTCCCTCTCGGTAGCTGTTTCGATGGCTGCCGAGACCACGCTCAGGGGTCTGGATTCGGCACGCGAATATGGAACTCGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACAAGCCAGGAAGGAGTATGAATAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAGTTCATCAGTCTTGAAGATTTAAGGGAGTTTTCTGAGATCAGAATCTTTAGAGATCATCAGCGCGGTTGCGTGTCGGTTCGGAAGAAACCGAGGCCTGATTTTTGCTGATTCTTAAATACTAAACCATGTTGCGTGTCTAAACTTTTGTAGCTTTTATATGAATGTTGTTCTTGTTTTTTTTGAGTCTGTAATGCTGTTGCCAAACTGTCTTTCCCCTGTTTCCTTGTTTTGGTTTGGAATTGAAGAAAATCAGATGGCATTATTGGTGGTGTGCTTTTAAACACCCAGAATTGTTTGTTTCTTTGATTTTGATTTCTAGTCGAT
Coding sequence (CDS)
ATGCCGGGGTTCGGTGTTTTCCCTCTCGGTAGCTGTTTCGATGGCTGCCGAGACCACGCTCAGGGGTCTGGATTCGGCACGCGAATATGGAACTCGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACAAGCCAGGAAGGAGTATGAATAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAGTTCATCAGTCTTGAAGATTTAAGGGAGTTTTCTGAGATCAGAATCTTTAGAGATCATCAGCGCGGTTGCGTGTCGGTTCGGAAGAAACCGAGGCCTGATTTTTGCTGA
Protein sequence
MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEIRIFRDHQRGCVSVRKKPRPDFC
Homology
BLAST of Sed0011127 vs. NCBI nr
Match:
XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 uncharacterized protein E6C27_scaffold171G006430 [Cucumis melo var. makuwa] >TYK17161.1 uncharacterized protein E5676_scaffold434G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 294.7 bits (753), Expect = 4.4e-76
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTR+WN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142
BLAST of Sed0011127 vs. NCBI nr
Match:
XP_011650993.1 (uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_009946 [Cucumis sativus])
HSP 1 Score: 292.0 bits (746), Expect = 2.8e-75
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTRIWN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142
BLAST of Sed0011127 vs. NCBI nr
Match:
XP_038875149.1 (uncharacterized protein LOC120067683 [Benincasa hispida])
HSP 1 Score: 291.6 bits (745), Expect = 3.7e-75
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTRIWN SDRPVELQIRVGSILK+VH+LKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKRVHNLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSV KKPRPDFC
Sbjct: 121 RIFRDHQRGCVSVHKKPRPDFC 142
BLAST of Sed0011127 vs. NCBI nr
Match:
XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothetical protein SDJN03_10647, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028926.1 hypothetical protein SDJN02_10109, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 290.4 bits (742), Expect = 8.3e-75
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTRIWN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Sed0011127 vs. NCBI nr
Match:
XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 135/142 (95.07%), Postives = 136/142 (95.77%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTRIWN SDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Sed0011127 vs. ExPASy TrEMBL
Match:
A0A5A7U2C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00050 PE=4 SV=1)
HSP 1 Score: 294.7 bits (753), Expect = 2.1e-76
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTR+WN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142
BLAST of Sed0011127 vs. ExPASy TrEMBL
Match:
A0A1S3AWR3 (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)
HSP 1 Score: 294.7 bits (753), Expect = 2.1e-76
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTR+WN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142
BLAST of Sed0011127 vs. ExPASy TrEMBL
Match:
A0A0A0L8V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)
HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTRIWN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142
BLAST of Sed0011127 vs. ExPASy TrEMBL
Match:
A0A6J1F8W2 (uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC111443378 PE=4 SV=1)
HSP 1 Score: 290.4 bits (742), Expect = 4.0e-75
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQ SGFGTRIWN SDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Sed0011127 vs. ExPASy TrEMBL
Match:
A0A6J1I9A2 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX=3661 GN=LOC111472255 PE=4 SV=1)
HSP 1 Score: 287.0 bits (733), Expect = 4.4e-74
Identity = 134/142 (94.37%), Postives = 134/142 (94.37%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDH Q SGFGTRIWN SDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
LKCKSIYKAY PGRSM SLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Sed0011127 vs. TAIR 10
Match:
AT3G06145.1 (unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 156.4 bits (394), Expect = 1.7e-38
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = 0
Query: 9 LGSCFDGCRDH-----AQGSGFGTRIWNSSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
L C+ GC D + TR WN SDRPVELQIRVGSILK+VH+LKPG SK+L+
Sbjct: 28 LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87
Query: 69 KSIYKAYKPGRSMNSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEIRIF 128
+SI++AY + L YYD+ C PYVW+HE+G D +MVKQQ++SLEDLR++SEIR+F
Sbjct: 88 RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147
Query: 129 RDHQRGCVSVRKKPR 139
+D QRGCV+V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008438723.1 | 4.4e-76 | 94.37 | PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 unc... | [more] |
XP_011650993.1 | 2.8e-75 | 94.37 | uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical ... | [more] |
XP_038875149.1 | 3.7e-75 | 94.37 | uncharacterized protein LOC120067683 [Benincasa hispida] | [more] |
XP_022936946.1 | 8.3e-75 | 95.77 | uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothet... | [more] |
XP_023522910.1 | 1.1e-74 | 95.07 | uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U2C9 | 2.1e-76 | 94.37 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3AWR3 | 2.1e-76 | 94.37 | uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... | [more] |
A0A0A0L8V0 | 1.4e-75 | 94.37 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1 | [more] |
A0A6J1F8W2 | 4.0e-75 | 95.77 | uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC1114433... | [more] |
A0A6J1I9A2 | 4.4e-74 | 94.37 | LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX... | [more] |
Match Name | E-value | Identity | Description | |
AT3G06145.1 | 1.7e-38 | 56.30 | unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bact... | [more] |