Sed0011119 (gene) Chayote v1

Overview


Name	Sed0011119
Type	gene
Organism	Sechium edule (Chayote v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	LG04: 26205861 .. 26206449 (+)
RNA-Seq Expression	Sed0011119
Synteny	Sed0011119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCACTACGATGCTATCATCTTCTCTTCTTCCGGCAAGGGCTCCGACCGGTAACCGTCCAGACGGCCGACTCTGTCTCTTCCAAATTGGTTCTGTCCGTACAAACAACAGCAGGGCTCGTGTCCCCTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTATGCTGTCCTATCCTCTTCAACTTTGTTGATAAATAAATTCGTTTACATGTGAAAAGCTTAGAAAAATTCAGAATAATAAATTGATGTGGGTTTGCAGAGTTACCTTTTCTTTTCTGTTTTGAAGGTTGAATTGCCCAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAACTCCAGAGCCTGCATGATAGGTCTCATTGGGATATTCGTAGTAGAGCTGGTGAGTTTTTCATTTCTTTTTTTTTTTTCAAAAAAAAGTTTCTTTCTTTTACCTTCTATATTCAAGTTTGTGGGTTTTATTTATTTTTGTCTGATTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCTTGGATCTTCCTCTGTGA

mRNA sequence

ATGGCGTCCTCCACTACGATGCTATCATCTTCTCTTCTTCCGGCAAGGGCTCCGACCGGTAACCGTCCAGACGGCCGACTCTGTCTCTTCCAAATTGGTTCTGTCCGTACAAACAACAGCAGGGCTCGTGTCCCCTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCCAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAACTCCAGAGCCTGCATGATAGGTCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCTTGGATCTTCCTCTGTGA

Coding sequence (CDS)

ATGGCGTCCTCCACTACGATGCTATCATCTTCTCTTCTTCCGGCAAGGGCTCCGACCGGTAACCGTCCAGACGGCCGACTCTGTCTCTTCCAAATTGGTTCTGTCCGTACAAACAACAGCAGGGCTCGTGTCCCCTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCCAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAACTCCAGAGCCTGCATGATAGGTCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCTTGGATCTTCCTCTGTGA

Protein sequence

MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

Homology

[Close]

BLAST of Sed0011119 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 216.9 bits (551), Expect = 9.7e-53
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS+ MLSSSLLPARAPTGNR DGRLCLFQIGSVR NNSRARVPFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-51
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS+ +LSSSLLPARAP  ++ DGRLCLFQIGSVR NNSR+RVPFRVQAAKPPAGVELP
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAE+WNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS T+LSSSLLPARAP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 105/119 (88.24%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS T+LSSSLLPA AP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-42
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVE 60
           MASS+ +L SSL PARA T N  D R CLFQIG SVR N+SRAR  FR+Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of Sed0011119 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-25
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 4   STTMLSSSLLPARAPTGNRPDGR---LCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 63
           S++ LSSSL    +       GR   LC           +R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILNKGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

[Close]

BLAST of Sed0011119 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS+ MLSSSLLPARAPTGNR DGRLCLFQIGSVR NNSRARVPFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS T+LSSSLLPARAP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 60
           MASS T+LSSSLLPARAP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Sed0011119 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.5e-43
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVE 60
           MASS+ +L SSL PARA T N  D R CLFQIG SVR N+SRAR  FR+Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of Sed0011119 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.3e-42
Identity = 103/121 (85.12%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVE 60
           MASS+ +L SSL PARA T N+ DGR  LFQIG SVR NNSRAR  FRVQ AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120

[Close]

BLAST of Sed0011119 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 117.1 bits (292), Expect = 9.8e-27
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 4   STTMLSSSLLPARAPTGNRPDGR---LCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELP 63
           S++ LSSSL    +       GR   LC           +R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILNKGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of Sed0011119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145630.1	9.7e-53	92.44	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]
XP_038905156.1	2.4e-51	90.76	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022934608.1	5.9e-50	89.08	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]
XP_023526506.1	2.9e-49	88.24	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp....	[more]
XP_004137791.1	1.6e-42	84.30	light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN...	[more]

BLAST of Sed0011119 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	1.4e-25	56.30	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Sed0011119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV10	4.7e-53	92.44	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A6J1J0W8	2.9e-50	89.08	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	2.9e-50	89.08	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]
A0A0A0LAI0	7.5e-43	84.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	8.3e-42	85.12	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Sed0011119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	9.8e-27	56.30	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..116
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..116
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 62..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011119.1	Sed0011119.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane