Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATGCAAGCAAAACGAAGATCCACGGCAGCTCGTCGTTGTCGTTCACGCCCCATGAATACTGTTTCGACCAAGGTTATAGCCATCTTCAAACCTCACACTCCTGTTCAAACAAAGAAGCCTAATTATAGTAATGGTAATTTTGAGGCATCTCAACTTAGAAGTACTCTACCACCAAAGACAAGTACGTCGTCGTCAACGCCCGCAAATGCTGCTCGAGTAGCCATGCTGAAAGCCAAATATGGTGGTATCATTGCCAAAGCTAAGTGCGCGGTTTCCTCCGATTCGGATCTTGATGCTTCGAAGACATGCTCGATACAAGAACGAAGGCAGGCTGCAAGAGAAGCCCTAAACAACATTAAACAAACAGTTGATTTCAACGAGAATCTTGATGCTATGAGAGAGTTTAATAAACTAATGGGACTAGAGATGAGAGTATAG
mRNA sequence
ATGAAGATGATGCAAGCAAAACGAAGATCCACGGCAGCTCGTCGTTGTCGTTCACGCCCCATGAATACTGTTTCGACCAAGGTTATAGCCATCTTCAAACCTCACACTCCTGTTCAAACAAAGAAGCCTAATTATAGTAATGGTAATTTTGAGGCATCTCAACTTAGAAGTACTCTACCACCAAAGACAAGTACGTCGTCGTCAACGCCCGCAAATGCTGCTCGAGTAGCCATGCTGAAAGCCAAATATGGTGGTATCATTGCCAAAGCTAAGTGCGCGGTTTCCTCCGATTCGGATCTTGATGCTTCGAAGACATGCTCGATACAAGAACGAAGGCAGGCTGCAAGAGAAGCCCTAAACAACATTAAACAAACAGTTGATTTCAACGAGAATCTTGATGCTATGAGAGAGTTTAATAAACTAATGGGACTAGAGATGAGAGTATAG
Coding sequence (CDS)
ATGAAGATGATGCAAGCAAAACGAAGATCCACGGCAGCTCGTCGTTGTCGTTCACGCCCCATGAATACTGTTTCGACCAAGGTTATAGCCATCTTCAAACCTCACACTCCTGTTCAAACAAAGAAGCCTAATTATAGTAATGGTAATTTTGAGGCATCTCAACTTAGAAGTACTCTACCACCAAAGACAAGTACGTCGTCGTCAACGCCCGCAAATGCTGCTCGAGTAGCCATGCTGAAAGCCAAATATGGTGGTATCATTGCCAAAGCTAAGTGCGCGGTTTCCTCCGATTCGGATCTTGATGCTTCGAAGACATGCTCGATACAAGAACGAAGGCAGGCTGCAAGAGAAGCCCTAAACAACATTAAACAAACAGTTGATTTCAACGAGAATCTTGATGCTATGAGAGAGTTTAATAAACTAATGGGACTAGAGATGAGAGTATAG
Protein sequence
MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPVQTKKPNYSNGNFEASQLRSTLPPKTSTSSSTPANAARVAMLKAKYGGIIAKAKCAVSSDSDLDASKTCSIQERRQAAREALNNIKQTVDFNENLDAMREFNKLMGLEMRV
Homology
BLAST of Sed0011103 vs. NCBI nr
Match:
TYK19957.1 (hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 3.9e-11
Identity = 67/162 (41.36%), Postives = 96/162 (59.26%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPV-QTKKPNYSNGNFEASQLRS-- 60
M+MMQAKRR R + + ++T T + + +T + QTKK SN N E ++ S
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVG--ELYTAIHQTKK---SNSNHELAKFESPS 60
Query: 61 -------TLPP---KTSTSSSTPANAARVAMLKAKYGGIIAKAKCAVSS-DSDL------ 120
TL P KT+ +P AARV MLK K+G I KA+ +S+ DS++
Sbjct: 61 SKNNNSPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVV 120
Query: 121 DASKTCSIQERRQAAREALNNIKQTVDFNENLDAMREFNKLM 143
+A K CSIQE+R+A+RE+L+ IK DFNENLD+MR+F +L+
Sbjct: 121 EAPKVCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELL 157
BLAST of Sed0011103 vs. NCBI nr
Match:
KAA0064635.1 (hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 3.9e-11
Identity = 67/162 (41.36%), Postives = 96/162 (59.26%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPV-QTKKPNYSNGNFEASQLRS-- 60
M+MMQAKRR R + + ++T T + + +T + QTKK SN N E ++ S
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVG--ELYTAIHQTKK---SNSNHELAKFESPS 60
Query: 61 -------TLPP---KTSTSSSTPANAARVAMLKAKYGGIIAKAKCAVSS-DSDL------ 120
TL P KT+ +P AARV MLK K+G I KA+ +S+ DS++
Sbjct: 61 SKNNNSTTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVV 120
Query: 121 DASKTCSIQERRQAAREALNNIKQTVDFNENLDAMREFNKLM 143
+A K CSIQE+R+A+RE+L+ IK DFNENLD+MR+F +L+
Sbjct: 121 EAPKVCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELL 157
BLAST of Sed0011103 vs. NCBI nr
Match:
KAE8647905.1 (hypothetical protein Csa_000421, partial [Cucumis sativus])
HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPVQTK--KPNYSNGNFEASQLRST 60
MKMMQ KRR + + +STKV KP+ Q K K + NF+ +
Sbjct: 6 MKMMQTKRRHVDYHVLKPK---VLSTKVTTAMKPYNIYQRKESKSDRELANFKCPSPKKN 65
Query: 61 ------LPPKTSTSSSTPANAARVAMLKAKYGGIIAKAKCAV-SSDSDLD---------A 120
+ P T+ +P AARV +LKAK+G I KA+ + +S++D +
Sbjct: 66 NIELLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGAT 125
Query: 121 SKTCSI-QERRQAAREALNNIKQTVDFNENLDAMREFNKLM 143
KTCSI QE+++A+REAL+ I DFNENLD+MREF K++
Sbjct: 126 PKTCSILQEQKRASREALDKINPVFDFNENLDSMREFEKIL 163
BLAST of Sed0011103 vs. NCBI nr
Match:
KGN61401.2 (hypothetical protein Csa_006690, partial [Cucumis sativus])
HSP 1 Score: 68.6 bits (166), Expect = 5.3e-08
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPVQTKKPNYSN--GNFEASQLRST 60
MKMMQ KRR + + +STKV KP+ Q K+ N NF+ +
Sbjct: 6 MKMMQTKRRYVDYHVLKPK---VLSTKVTTAMKPYNIYQRKESNSDRELANFKCPSPKKN 65
Query: 61 ------LPPKTSTSSSTPANAARVAMLKAKYGGIIAKAKCAV-SSDSDLD---------A 120
+ P T+ +P AARV +LKAK+G I KA+ + +S++D +
Sbjct: 66 NIELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGAT 125
Query: 121 SKTCSI-QERRQAAREALNNIKQTVDFNENLDAMREFNKLM 143
K CSI QE+++A+REAL+ I +FNENLD+MREF K++
Sbjct: 126 PKACSILQEQKRASREALDKINPVFNFNENLDSMREFEKIL 163
BLAST of Sed0011103 vs. NCBI nr
Match:
KAE8647906.1 (hypothetical protein Csa_000254, partial [Cucumis sativus])
HSP 1 Score: 54.7 bits (130), Expect = 7.9e-04
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 0
Query: 33 KPHTPVQTKKPNYSNGNFEASQLRSTLP-----------PKTSTSSSTPANAARVAMLKA 92
KP+ Q K+ SNG+ E + + P P T+ +P AARV +LKA
Sbjct: 2 KPYNIHQRKE---SNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKA 61
Query: 93 KYGGIIAKAKCAV-SSDSDLD---------ASKTCSI-QERRQAAREALNN-IKQTVDFN 141
K+G I KA+ + S++D + KTCSI QE+++A+REAL+ I DFN
Sbjct: 62 KFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFN 121
BLAST of Sed0011103 vs. ExPASy TrEMBL
Match:
A0A5A7VFH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003590 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 67/162 (41.36%), Postives = 96/162 (59.26%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPV-QTKKPNYSNGNFEASQLRS-- 60
M+MMQAKRR R + + ++T T + + +T + QTKK SN N E ++ S
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVG--ELYTAIHQTKK---SNSNHELAKFESPS 60
Query: 61 -------TLPP---KTSTSSSTPANAARVAMLKAKYGGIIAKAKCAVSS-DSDL------ 120
TL P KT+ +P AARV MLK K+G I KA+ +S+ DS++
Sbjct: 61 SKNNNSTTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVV 120
Query: 121 DASKTCSIQERRQAAREALNNIKQTVDFNENLDAMREFNKLM 143
+A K CSIQE+R+A+RE+L+ IK DFNENLD+MR+F +L+
Sbjct: 121 EAPKVCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELL 157
BLAST of Sed0011103 vs. ExPASy TrEMBL
Match:
A0A5D3D8Q3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00700 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 67/162 (41.36%), Postives = 96/162 (59.26%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPV-QTKKPNYSNGNFEASQLRS-- 60
M+MMQAKRR R + + ++T T + + +T + QTKK SN N E ++ S
Sbjct: 1 MRMMQAKRRYVNDRFPKRKVLSTKVTTTVG--ELYTAIHQTKK---SNSNHELAKFESPS 60
Query: 61 -------TLPP---KTSTSSSTPANAARVAMLKAKYGGIIAKAKCAVSS-DSDL------ 120
TL P KT+ +P AARV MLK K+G I KA+ +S+ DS++
Sbjct: 61 SKNNNSPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKLSNKDSNIYKYVVV 120
Query: 121 DASKTCSIQERRQAAREALNNIKQTVDFNENLDAMREFNKLM 143
+A K CSIQE+R+A+RE+L+ IK DFNENLD+MR+F +L+
Sbjct: 121 EAPKVCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELL 157
BLAST of Sed0011103 vs. ExPASy TrEMBL
Match:
A0A0A0KRB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 0
Query: 34 PHTPVQTKKPN--YSNGNFEASQLR---STLPPKTST-SSSTPANAARVAMLKAKYGGII 93
P+ Q K+ N + NF+ + + LP K +T +P AARV +LKAK+G I
Sbjct: 3 PYNIHQIKESNSDHDLANFKCPSPKNNIAVLPIKPNTIVVLSPRRAARVEVLKAKFGSTI 62
Query: 94 AKAKCAVSSDSDLDASK----------TCSIQERRQAAREALNNIKQTVDFNENLDAMRE 143
KA+ + +S+ D++K CSIQE+RQA REAL+ I DFNENLD+MRE
Sbjct: 63 LKAQQKL-HNSNNDSNKHEYIVGATPNICSIQEQRQALREALDKINPAFDFNENLDSMRE 122
BLAST of Sed0011103 vs. ExPASy TrEMBL
Match:
A0A0A0KMZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 60/163 (36.81%), Postives = 86/163 (52.76%), Query Frame = 0
Query: 1 MKMMQAKRRSTAARRCRSRPMNTVSTKVIAIFKPHTPVQTKKPNYSNGNFEASQLRSTLP 60
M+MMQ KRR + + +STKV KP+ Q K+ SNG+ E + + P
Sbjct: 1 MRMMQTKRRYIDYHMLKPK---VLSTKVTKTMKPYNIHQRKE---SNGDHELTNFKCLSP 60
Query: 61 -----------PKTSTSSSTPANAARVAMLKAKYGGIIAKAKCAV-SSDSDLD------- 120
P T+ +P AARV +LKAK+G I KA+ + S++D +
Sbjct: 61 KKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVI 120
Query: 121 --ASKTCSI-QERRQAAREALNN-IKQTVDFNENLDAMREFNK 141
KTCSI QE+++A+REAL+ I DFNENLD+M+EF +
Sbjct: 121 GATPKTCSILQEQKRASREALDKMINPVFDFNENLDSMKEFER 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK19957.1 | 3.9e-11 | 41.36 | hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa] | [more] |
KAA0064635.1 | 3.9e-11 | 41.36 | hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa] | [more] |
KAE8647905.1 | 1.1e-08 | 37.89 | hypothetical protein Csa_000421, partial [Cucumis sativus] | [more] |
KGN61401.2 | 5.3e-08 | 36.65 | hypothetical protein Csa_006690, partial [Cucumis sativus] | [more] |
KAE8647906.1 | 7.9e-04 | 37.40 | hypothetical protein Csa_000254, partial [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VFH7 | 1.9e-11 | 41.36 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3D8Q3 | 1.9e-11 | 41.36 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KRB6 | 1.1e-06 | 41.60 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1 | [more] |
A0A0A0KMZ1 | 1.1e-06 | 36.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |