Sed0011093 (gene) Chayote v1

Overview


Name	Sed0011093
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor PRE3-like
Location	LG01: 13376357 .. 13377590 (+)
RNA-Seq Expression	Sed0011093
Synteny	Sed0011093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGCAGATCTCGTTCTAGACAATCCGGTGCTGTAAGAATCTCCGACGAGCAGATCACCGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGAAGCCGCCAATCTGACAAGGTACGTCGTGTATTAAGAATATGAATGAAAGATTTGCTCCTAATTTAACATGTTTTCATAGGAAGAGATTTCAAATTTCCTTCCATTCCAGTCTTCTGCTGATTTTCAAGCTTAAAATTGTTTGTTAAAATGTTGGAGAACCAAATTTAATGTAGATGCCTTTGGGGCTGTTTGTTTGTCATATTTAAGGAGGATTTAGTGGGAGAATTTACTAACCCTTCCTCGAAAAACCTATCTCCAAACGAGCTATTATTAAATGTTCCTTTTTTTTTTTTATCTTTAAAAATAAGTCTCATTTCTAATCATTCATTTATAACTACTCAATCATTTCTAATCACTCATTTTTAACCACTCATCTTTAATTATTACCTTTTTAACTGCTCATTTTAAATCTACATCCAAACAAAGTTGTGACTGTAACTCCTCTACATAAAAACCACATCCAAATGAGTTTTTTTAATTACTCTAAATCTTAATATAACTTTTTAATCTGAATTCTCACTAAATATGGTAAACAAACACCCCTTTGTGAGGAAAATTTATTAAAGGAGGTTGATTACCCGACTATAACTCCTTATAAAAGTACATGAATAAATCATGACCACATTCTAATAAAAAGAGATATATACATGCAAGCTACGGTCAATAACATGCATATTTCTTTTCGATAACTGTTATAAGAATTTTAAATTGGGTAACTAATTTTCTTTAAAAAAACATGAAATTAGAAACAAAACATGTTGAATAGATCTTCTTCATTCATCGATGGAGACAGTCTTCCCTCTTAAAAGTACGAAAAGGCGAACATTGTTGTAGTTCGGCCAAAATTGCTAGATGCACGAGAATGTCGAGACGAAGAGCGAGAGGTTGAGTGTAGATTTCGAATCGTGATATAAATTTGTAGCGTTAGATAAAGGGGGTGTGAATAATTTGAAAGAAAAGTTTAATTGTAAATTTGTAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAAATGCATTCGAAGGCTACACAAAGAAGTGGACGATCTGAGTGAGAGACTGTCCGAGTTGTTGGCCACGTCGGACACAGCCCAAGCCGACATTATTAGAAGCTTGCTCACGCAGTGA

mRNA sequence

ATGTCGGGCAGATCTCGTTCTAGACAATCCGGTGCTGTAAGAATCTCCGACGAGCAGATCACCGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGAAGCCGCCAATCTGACAAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAAATGCATTCGAAGGCTACACAAAGAAGTGGACGATCTGAGTGAGAGACTGTCCGAGTTGTTGGCCACGTCGGACACAGCCCAAGCCGACATTATTAGAAGCTTGCTCACGCAGTGA

Coding sequence (CDS)

ATGTCGGGCAGATCTCGTTCTAGACAATCCGGTGCTGTAAGAATCTCCGACGAGCAGATCACCGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGAAGCCGCCAATCTGACAAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAAATGCATTCGAAGGCTACACAAAGAAGTGGACGATCTGAGTGAGAGACTGTCCGAGTTGTTGGCCACGTCGGACACAGCCCAAGCCGACATTATTAGAAGCTTGCTCACGCAGTGA

Protein sequence

MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

Homology

[Close]

BLAST of Sed0011093 vs. NCBI nr
Match: KAG6573012.1 (putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. NCBI nr
Match: XP_022955105.1 (transcription factor PRE3-like [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. NCBI nr
Match: XP_023542851.1 (transcription factor PRE3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS A+RISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSAIRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. NCBI nr
Match: XP_004152438.1 (transcription factor PRE3 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS +VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. NCBI nr
Match: KAG7012197.1 (Transcription factor PRE3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-27
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 1  MSG-RSRSRQ-SGAVRISDEQITDLVHKLQQLLPEIR-SRQSDKVSAAKVLQETCKCIRR 60
          MSG RSRSRQ SG  RIS++QI DL+ KLQQLLPE+R SR+SDKVSAA+VLQ+TC  IR 
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHKEVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          LH+EVDDLSERLSELLA SDTAQA +IRSLLTQ
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Sed0011093 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-25
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSGR--SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRL 60
          MS R  SRSRQSG+ RISD+QI+DLV KLQ L+PE+R R+SDKVSA+KVLQETC  IR L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HKEVDDLSERLSELLATSD--TAQADIIRSLL 89
          H+EVDDLS+RLSELLA++D  +A+A IIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0011093 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-24
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 2  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKE 61
          S RSRSRQSG+ RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETC  IR LH+E
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQE 62

Query: 62 VDDLSERLSELLATSD--TAQADIIRSLL 89
          VDDLSERLSELLATSD  +AQA IIRSLL
Sbjct: 63 VDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]

BLAST of Sed0011093 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-24
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 2  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKE 61
          S RSRSRQSG+ RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETC  IR LH+E
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQE 62

Query: 62 VDDLSERLSELLATSD--TAQADIIRSLL 89
          VDDLSERLSELLATSD  +AQA IIRSLL
Sbjct: 63 VDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]

BLAST of Sed0011093 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-23
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MS RSRSR S A RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC  IR LH+
Sbjct: 1  MSSRSRSRASSAARITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHR 60

Query: 61 EVDDLSERLSELLATSD--TAQADIIRSLL 89
          EVDDLSERL+ELLA +D  TAQA +IR LL
Sbjct: 61 EVDDLSERLAELLAAADVSTAQAAVIRGLL 90

[Close]

BLAST of Sed0011093 vs. ExPASy TrEMBL
Match: A0A6J1GU92 (transcription factor PRE3-like OS=Cucurbita moschata OX=3662 GN=LOC111457173 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.1e-33
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. ExPASy TrEMBL
Match: A0A0A0LQQ1 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.0e-32
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS +VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. ExPASy TrEMBL
Match: A0A1S4DU40 (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. ExPASy TrEMBL
Match: A0A6J1K5U5 (transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111490325 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.7e-32
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHK 60
          MSG SRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+
Sbjct: 1  MSGISRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Sed0011093 vs. ExPASy TrEMBL
Match: A0A5D3BJ22 (Transcription factor PRE3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003000 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.2e-30
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 5  SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDD 64
          SRSRQS  VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDD
Sbjct: 6  SRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDD 65

Query: 65 LSERLSELLATSDTAQADIIRSLLTQ 91
          LSERLSELLATSDTAQA IIRSLLTQ
Sbjct: 66 LSERLSELLATSDTAQAAIIRSLLTQ 91

[Close]

BLAST of Sed0011093 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 120.6 bits (301), Expect = 6.7e-28
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 1  MSG-RSRSRQ-SGAVRISDEQITDLVHKLQQLLPEIR-SRQSDKVSAAKVLQETCKCIRR 60
          MSG RSRSRQ SG  RIS++QI DL+ KLQQLLPE+R SR+SDKVSAA+VLQ+TC  IR 
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHKEVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          LH+EVDDLSERLSELLA SDTAQA +IRSLLTQ
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Sed0011093 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 4.8e-26
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MSGR--SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRL 60
          MS R  SRSRQSG+ RISD+QI+DLV KLQ L+PE+R R+SDKVSA+KVLQETC  IR L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HKEVDDLSERLSELLATSD--TAQADIIRSLL 89
          H+EVDDLS+RLSELLA++D  +A+A IIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0011093 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 2  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEI-RSRQSDKVSAAKVLQETCKCIRRLHK 61
          S +SRSRQ+GA  I+DEQI DLV +L +LLPE+  +R+S KVSA++VLQETC  IR L K
Sbjct: 3  SRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSK 62

Query: 62 EVDDLSERLSELLATSDTAQADIIRSLLTQ 91
          EVDDLSERLS+LL ++D+AQA +IRSLL Q
Sbjct: 63 EVDDLSERLSQLLESTDSAQAALIRSLLMQ 92

[Close]

BLAST of Sed0011093 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-19
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRS-RQSDKVSAAKVLQETCKCIRRLH 60
          MS R   + S A RISD+Q+ DLV KL+Q LPEI   R+SDKVSA+KVLQETC  IR+LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 KEVDDLSERLSELL--ATSDTAQADIIRSLL 89
          +EVD+LS+RLS+LL     D+ +A +IRSLL
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLL 91

[Close]

BLAST of Sed0011093 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 90.1 bits (222), Expect = 9.7e-19
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 1  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEI-RSRQSDKVSAAKVLQETCKCIRRLH 60
          MS R   + S A RISD Q+ DLV KL+Q+LPEI + R+SDK SA+KVLQETC  IR L+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 KEVDDLSERLSELLAT--SDTAQADIIRSLL 89
          +EVD+LSERLS+LL +   D+ +A +IRSLL
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLL 91

The following BLAST results are available for this feature:

BLAST of Sed0011093 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573012.1	1.9e-32	91.11	putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma s...	[more]
XP_022955105.1	1.9e-32	91.11	transcription factor PRE3-like [Cucurbita moschata]	[more]
XP_023542851.1	2.5e-32	90.00	transcription factor PRE3-like [Cucurbita pepo subsp. pepo]	[more]
XP_004152438.1	4.2e-32	90.00	transcription factor PRE3 [Cucumis sativus]	[more]
KAG7012197.1	5.5e-32	90.00	Transcription factor PRE3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0011093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA64	9.4e-27	77.42	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q8GW32	6.7e-25	71.74	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	1.5e-24	73.03	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.5e-24	73.03	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
A2Z730	3.7e-23	68.89	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]

BLAST of Sed0011093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GU92	9.1e-33	91.11	transcription factor PRE3-like OS=Cucurbita moschata OX=3662 GN=LOC111457173 PE=...	[more]
A0A0A0LQQ1	2.0e-32	90.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 S...	[more]
A0A1S4DU40	2.7e-32	90.00	transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1	[more]
A0A6J1K5U5	7.7e-32	90.00	transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111490325 PE=4 ...	[more]
A0A5D3BJ22	4.2e-30	89.53	Transcription factor PRE3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Sed0011093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	6.7e-28	77.42	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	4.8e-26	71.74	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G47710.1	1.9e-22	65.56	BANQUO 3	[more]
AT3G28857.1	1.1e-19	60.44	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	9.7e-19	59.34	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..82
None	No IPR available	PANTHER	PTHR46446:SF3	TRANSCRIPTION FACTOR PRE3	coord: 2..88
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 9..75 e-value: 1.27621E-18 score: 70.4099
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 5..86 e-value: 2.2E-8 score: 35.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 18..76
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 2..88
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 4..58 score: 9.565651

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011093.1	Sed0011093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity