Sed0011087 (gene) Chayote v1

Overview
NameSed0011087
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPhloem filament protein
LocationLG10: 33139845 .. 33140557 (-)
RNA-Seq ExpressionSed0011087
SyntenySed0011087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTACTAAACAAAACAAAACAAGCCATCACAAACACTTGTTTCATATAAAACAATCCCAAAGGCTACGATATGACTATCGGATTAGGATTTGGCTTCCATCTTGGTTTGCGCGATCACCATGGTCATCGGCGACCGGGGTGCCAACCATGTCAAGCTGGGAAATGGGAAGTGATCACCGATCTCGGGTCGTCGTGCGTTCAAGATGTTGCGAAGTTCGCGGTGCAAGAACACAACAGTAAACATTGGGGATTAAACTTGACATACAGGCACACAATTGCAGCTTGGTACACTGAAGTGGAGAATGGAAGCTTGAAGTTACGTCTCCATATTCAAGTTGCACGTTCTTGTGGACGTACTGAAAACCATGAAGCTATTGTGCATGAAAAGAACACCGAATGTGGGAGAAACAAGATACTTGAATCATTCAGGCGTCTGTAGAGAAGTTACAAAAATTTCTCTTTTAAAATTCATCATATCTATATATGCCACTCATGTTGTATTGGATTTGATGATCTAAGTTTAATATACAATCAAAATAAACCTTATTATATAGCTAATCGTCTCTCTATGGTCAAAGTATTTATCATCAATATGTTGTTGCTTTCCTACTGATATATTCCCATAACTATAAATTTGTTTTGTTCGGAGATAGATTTTACGGTTATCTTGTTTGGTGGTAATCCATTTTAATAGCATTTGGTCTTTATTAG

mRNA sequence

CAACTACTAAACAAAACAAAACAAGCCATCACAAACACTTGTTTCATATAAAACAATCCCAAAGGCTACGATATGACTATCGGATTAGGATTTGGCTTCCATCTTGGTTTGCGCGATCACCATGGTCATCGGCGACCGGGGTGCCAACCATGTCAAGCTGGGAAATGGGAAGTGATCACCGATCTCGGGTCGTCGTGCGTTCAAGATGTTGCGAAGTTCGCGGTGCAAGAACACAACAGTAAACATTGGGGATTAAACTTGACATACAGGCACACAATTGCAGCTTGGTACACTGAAGTGGAGAATGGAAGCTTGAAGTTACGTCTCCATATTCAAGTTGCACGTTCTTGTGGACGTACTGAAAACCATGAAGCTATTGTGCATGAAAAGAACACCGAATGTGGGAGAAACAAGATACTTGAATCATTCAGGCGTCTGTAGAGAAGTTACAAAAATTTCTCTTTTAAAATTCATCATATCTATATATGCCACTCATGTTGTATTGGATTTGATGATCTAAGTTTAATATACAATCAAAATAAACCTTATTATATAGCTAATCGTCTCTCTATGGTCAAAGTATTTATCATCAATATGTTGTTGCTTTCCTACTGATATATTCCCATAACTATAAATTTGTTTTGTTCGGAGATAGATTTTACGGTTATCTTGTTTGGTGGTAATCCATTTTAATAGCATTTGGTCTTTATTAG

Coding sequence (CDS)

ATGACTATCGGATTAGGATTTGGCTTCCATCTTGGTTTGCGCGATCACCATGGTCATCGGCGACCGGGGTGCCAACCATGTCAAGCTGGGAAATGGGAAGTGATCACCGATCTCGGGTCGTCGTGCGTTCAAGATGTTGCGAAGTTCGCGGTGCAAGAACACAACAGTAAACATTGGGGATTAAACTTGACATACAGGCACACAATTGCAGCTTGGTACACTGAAGTGGAGAATGGAAGCTTGAAGTTACGTCTCCATATTCAAGTTGCACGTTCTTGTGGACGTACTGAAAACCATGAAGCTATTGTGCATGAAAAGAACACCGAATGTGGGAGAAACAAGATACTTGAATCATTCAGGCGTCTGTAG

Protein sequence

MTIGLGFGFHLGLRDHHGHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVENGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFRRL
Homology
BLAST of Sed0011087 vs. NCBI nr
Match: KAG6607543.1 (hypothetical protein SDJN03_00885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 0

Query: 3   IGLGFGFHLGLRDHHGHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLN 62
           +GLG GF+LG  D     +P C  C   KW  I DLG  C+  VAKFA++EH+  H   N
Sbjct: 5   LGLGLGFNLGFPD---RPKPDC-GCNE-KWIPIQDLGMECLHQVAKFALEEHHKNH-REN 64

Query: 63  LTYRHTIAAWYTEVENGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFRRL 122
              +     WY E++  S+K RLHI+V+   G    HE IV EK  ECGR + LESFR +
Sbjct: 65  WALKGISGGWYLEIDAYSVKYRLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118

BLAST of Sed0011087 vs. NCBI nr
Match: KAG6607542.1 (hypothetical protein SDJN03_00884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 1  MTIGLGFGFHLGLRDHHGHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWG 60
          MTIGL  G +LG  DHHG  R G   C  GKW  I +L S C+Q++++FAV+E+N + + 
Sbjct: 1  MTIGLNLGINLGFFDHHGRPRLG-HHCH-GKWVEIPNLDSPCMQEISRFAVEEYNHR-YR 60

Query: 61 LNLTYRHTIAAWYTEVENGSLKLRLHIQVARSCGRTE 98
           NLTY+   AAWY EV+  S+K RLHIQVA+     E
Sbjct: 61 KNLTYQFIYAAWYLEVDARSVKYRLHIQVAKEMNMEE 94

BLAST of Sed0011087 vs. NCBI nr
Match: XP_022989567.1 (uncharacterized protein LOC111486626 isoform X2 [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-09
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0

Query: 18  GHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVE 77
           GH      P Q  KW  I DL    VQ+V+KFA+ E+N    G  L Y      WY E+ 
Sbjct: 110 GHYVGPVDPPQVEKWIKIPDLRVPFVQEVSKFAIDEYNK--GGEGLKYVEIYDGWYAEMG 169

Query: 78  NGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFRRL 123
             ++K RLH++     GR  N+EAIV  K     + KILESF+ L
Sbjct: 170 QDNIKFRLHVKAKDCLGRLRNYEAIVLVKQFLSKKIKILESFKVL 212

BLAST of Sed0011087 vs. NCBI nr
Match: XP_022989566.1 (uncharacterized protein LOC111486626 isoform X1 [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-09
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0

Query: 18  GHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVE 77
           GH      P Q  KW  I DL    VQ+V+KFA+ E+N    G  L Y      WY E+ 
Sbjct: 110 GHYVGPVDPPQVEKWIKIPDLRVPFVQEVSKFAIDEYNK--GGEGLKYVEIYDGWYAEMG 169

Query: 78  NGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFRRL 123
             ++K RLH++     GR  N+EAIV  K     + KILESF+ L
Sbjct: 170 QDNIKFRLHVKAKDCLGRLRNYEAIVLVKQFLSKKIKILESFKVL 212

BLAST of Sed0011087 vs. NCBI nr
Match: AAC12676.1 (phloem filament protein [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 18  GHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVE 77
           GH      P Q  KW  I DL    VQ+V+KFA+ E+N    G  L Y      WY E+ 
Sbjct: 110 GHYVGPVDPPQVEKWIKIPDLRVPFVQEVSKFAIDEYNK--GGEGLKYVEIYDGWYAEMG 169

Query: 78  NGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFR 121
             ++K RLH++     GR  N+EAIV  K     + KILESF+
Sbjct: 170 QDNIKFRLHVKAKDCLGRLRNYEAIVLVKQFLSKKIKILESFK 210

BLAST of Sed0011087 vs. ExPASy Swiss-Prot
Match: P86472 (Cysteine proteinase inhibitor 1 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CYT1 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 8.0e-05
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 29  AGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVENGSLKLRLHIQ 88
           AG W  I +L S+ VQDVA+FAV EHN K     L Y+ ++   YT+V  G+   RL I 
Sbjct: 29  AGGWRPIENLNSAEVQDVAQFAVSEHN-KQANDELQYQ-SVVRGYTQVVAGT-NYRLVI- 88

Query: 89  VARSCGRTENHEAIVHEKNTECGRNKILESFRRL 123
            A+      N+EA+V +K     RN  L SFR++
Sbjct: 89  AAKDGAVVGNYEAVVWDKPWMHFRN--LTSFRKV 116

BLAST of Sed0011087 vs. ExPASy Swiss-Prot
Match: Q6TPK4 (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 29  AGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVENGSLKLRLHIQ 88
           AG W  I  L S+ VQDVA+FAV EHN K     L Y+ ++   YT+V  G+   RL I 
Sbjct: 29  AGGWRPIESLNSAEVQDVAQFAVSEHN-KQANDELQYQ-SVVRGYTQVVAGT-NYRLVI- 88

Query: 89  VARSCGRTENHEAIVHEKNTECGRNKILESFRRL 123
            A+      N+EA+V +K     RN  L SFR++
Sbjct: 89  AAKDGAVVGNYEAVVWDKPWMHFRN--LTSFRKV 116

BLAST of Sed0011087 vs. ExPASy TrEMBL
Match: A0A6J1JKF7 (uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0

Query: 18  GHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVE 77
           GH      P Q  KW  I DL    VQ+V+KFA+ E+N    G  L Y      WY E+ 
Sbjct: 110 GHYVGPVDPPQVEKWIKIPDLRVPFVQEVSKFAIDEYNK--GGEGLKYVEIYDGWYAEMG 169

Query: 78  NGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFRRL 123
             ++K RLH++     GR  N+EAIV  K     + KILESF+ L
Sbjct: 170 QDNIKFRLHVKAKDCLGRLRNYEAIVLVKQFLSKKIKILESFKVL 212

BLAST of Sed0011087 vs. ExPASy TrEMBL
Match: A0A6J1JG70 (uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0

Query: 18  GHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVE 77
           GH      P Q  KW  I DL    VQ+V+KFA+ E+N    G  L Y      WY E+ 
Sbjct: 110 GHYVGPVDPPQVEKWIKIPDLRVPFVQEVSKFAIDEYNK--GGEGLKYVEIYDGWYAEMG 169

Query: 78  NGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFRRL 123
             ++K RLH++     GR  N+EAIV  K     + KILESF+ L
Sbjct: 170 QDNIKFRLHVKAKDCLGRLRNYEAIVLVKQFLSKKIKILESFKVL 212

BLAST of Sed0011087 vs. ExPASy TrEMBL
Match: P94012 (Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-09
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 18  GHRRPGCQPCQAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVE 77
           GH      P Q  KW  I DL    VQ+V+KFA+ E+N    G  L Y      WY E+ 
Sbjct: 110 GHYVGPVDPPQVEKWIKIPDLRVPFVQEVSKFAIDEYNK--GGEGLKYVEIYDGWYAEMG 169

Query: 78  NGSLKLRLHIQVARSCGRTENHEAIVHEKNTECGRNKILESFR 121
             ++K RLH++     GR  N+EAIV  K     + KILESF+
Sbjct: 170 QDNIKFRLHVKAKDCLGRLRNYEAIVLVKQFLSKKIKILESFK 210

BLAST of Sed0011087 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 31  KWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVENGSLKLRLHIQVA 90
           KW  I D+   C+Q VAKFAV++ N++H G  L Y      WY E+ + +LK RLHI+  
Sbjct: 16  KWIKIPDVNGHCLQQVAKFAVEKFNAEH-GDCLIYNSIFEGWYLELGSNNLKYRLHIKAV 75

Query: 91  RSCGRTENHEAIVHEKNTECGRNKILESF 120
              GR   +E +V E+  +  R + L SF
Sbjct: 76  DFLGRLLIYEVVVFEEKPDKERIRKLISF 103

BLAST of Sed0011087 vs. ExPASy TrEMBL
Match: A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 0

Query: 28  QAGKWEVITDLGSSCVQDVAKFAVQEHNSKHWGLNLTYRHTIAAWYTEVENGSLKLRLHI 87
           Q  KW  I ++    VQ++AKFAV EHN+K  G  L Y      W+ ++   ++K RLH+
Sbjct: 316 QEKKWIKIPNVQVPLVQELAKFAVDEHNNKS-GEGLKYVEVYDGWFMDLGQDNIKFRLHL 375

Query: 88  QVARSCGRTENHEAIVHEKNTECGRNKILESFR 121
           +     GR  ++EA+V  ++    R KILESF+
Sbjct: 376 KAKDWLGRIRSYEAVVLVEHFWSKRIKILESFK 407

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607543.11.5e-1644.17hypothetical protein SDJN03_00885, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607542.12.2e-1549.48hypothetical protein SDJN03_00884, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022989567.18.8e-0940.00uncharacterized protein LOC111486626 isoform X2 [Cucurbita maxima][more]
XP_022989566.18.8e-0940.00uncharacterized protein LOC111486626 isoform X1 [Cucurbita maxima][more]
AAC12676.11.2e-0839.81phloem filament protein [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
P864728.0e-0541.49Cysteine proteinase inhibitor 1 OS=Actinidia chinensis var. chinensis OX=1590841... [more]
Q6TPK41.1e-0441.49Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1JKF74.3e-0940.00uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JG704.3e-0940.00uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
P940125.6e-0939.81Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1[more]
A0A6J1EIQ82.3e-0739.33uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1ELQ95.2e-0737.63uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 42..119
e-value: 6.1E-16
score: 58.2
NoneNo IPR availableGENE3D3.10.450.10coord: 26..122
e-value: 5.6E-11
score: 44.5
NoneNo IPR availablePANTHERPTHR47116:SF5PHLOEM FILAMENT PROTEINcoord: 26..121
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 30..120
IPR027214CystatinPANTHERPTHR47116PHLOEM FILAMENT PROTEINcoord: 26..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011087.1Sed0011087.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity