Sed0011025 (gene) Chayote v1

Overview


Name	Sed0011025
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Translocon-associated protein subunit beta
Location	LG08: 29916421 .. 29918060 (+)
RNA-Seq Expression	Sed0011025
Synteny	Sed0011025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTATTCGATAGAGGTAAAGTTATATTCTATTGTAAGAAGCTAGCTATTGAGGAAAAATTGCGGGAAGGAGAAGAGACACTAAGAAAGGGGAAGATGAAGAACTTGGTGAAGACAAAAATTACCAAGCCGGTTAACGATGAGGTGATCAAAGGGATGTATTCTTTCAATGTTGATGAGCTTCTTGTTGGCATTCTTTCAATGCTGGAGAAGAGACAAAAGTTTTTCAGAGAGGATGAAATTGACATGGGGAGTGAGACAGACGCGTGGACAGAACAATTAATGGACTCGTGGCTCGAAAAGATGGACGCTCGCTGGCAGGCAGAGGTCTCTATCATGTGGCTTAGAATGGTTGGTTGGTTCGATAGGTGCTTCTAACCAGGCTTGGCCCACGAACAGAACCTTCCATTCATTAGGACCGGTTGATTTTTTACTCTTATTTTTGTTCATTTCTTCTTCTTTTAGACTTGGCTGTTGGGTTTTAGTTTATTTTTTTGCTTCATGTCTTGAAGTTTAAATGGTTTTGGTGTAGGTAGCTGCCTTTGATGTTTGGTTTTTGTGGTCCTTTGGTTCTCGTTAAAGGTGTAGTATGATGTGGTTTTTACAATTACAATTTAACAGGTGAACGGGTGAACAAAGGTAACTTTAATTAGCTTGTGGTTTGTTTGGGTTGGGGTTTGGATAGATCACTCATGGGATCGACCCTCCCCTTTTTAACTTTGGTGGGGTCACATACAACATGCTCTATCATCTTTCAAAGTTCATCGAAAGATAACCTTAATGGTTTTGACGATGTTTTCTTGGTCTTCAATGGGATTATTAAATTCCACAAATGATAAGACCAAGGTCGGTAAAGACTCTTTGCTGGTTAAGGATAATTTTAGAATTGGTTTTCTTTTATGTGATTGGTTACCTTTCAAACTGTGGTTTGAGGCTTATGTTGGATTTGGAGGAAAGTTCTTTATAGTGGTTTTTACCTCATATGGGAGGATAGAATGTATTGTGTTTGTGTTTTAGTTATGAAATCTATTTTCAAAAAAAAAAATTATAATTAATTACTAGACCTCGTTTGATAATCATTTTGTTTTTTGTTTTTTTTTTTTGAAATTTAACTTACGACAACTACTTTAGCATAAGTTATTTCTTATTTGGATATCTATGACTTTTTTTTTTTTTTAAATTTGGTTAGCATTTACCTTTAAATTTCAAAATTCAAAACAAAAAACGAAATAATTATTAAATTGTTGTCCATTTTTTTTGTACCTAATTTATGGAACGGCTCCTTCTCAAGCTCCCCATTTCTTCTTCTTATTCACCGATCTTCTCTTTTTCCCTAATTTTGACGATTTCATGGCGAATCTGATTCAGTCTTCTCTGATCTTGCACTTCTCACCCTACTCTTCGTCTCCTCTGCCATTGCATCCTCCGATGTCCCTTTCATTGTTGCGCACAAGAAGGCCTCTCTCACTCGCCTCAAATCCGGCGTCGAACGCGTCTCTAACTCCATCGAAATTTACAATCAAGGATCCTCGTATGTTCTTCCCATTCCTTTACTTCCCCTGCGCTATCTGTGCTCTAGATCGAATTGTTCTTTACGCACGCCTAGTTTCATTCGTTATGCTTTGTTCTGGATCTGA

mRNA sequence

ATGTTCGTATTCGATAGAGGTAAAGTTATATTCTATTGTAAGAAGCTAGCTATTGAGGAAAAATTGCGGGAAGGAGAAGAGACACTAAGAAAGGGGAAGATGAAGAACTTGGTGAAGACAAAAATTACCAAGCCGGTTAACGATGAGGTGATCAAAGGGATGTATTCTTTCAATGTTGATGAGCTTCTTGTTGGCATTCTTTCAATGCTGGAGAAGAGACAAAAGTTTTTCAGAGAGGATGAAATTGACATGGGGAGTGAGACAGACGCGTGGACAGAACAATTAATGGACTCGTGGCTCGAAAAGATGGACGCTCGCTGGCAGGCAGAGGTCTCTATCATGTGGCTTAGAATGGTTGTCTTCTCTGATCTTGCACTTCTCACCCTACTCTTCGTCTCCTCTGCCATTGCATCCTCCGATGTCCCTTTCATTGTTGCGCACAAGAAGGCCTCTCTCACTCGCCTCAAATCCGGCGTCGAACGCGTCTCTAACTCCATCGAAATTTACAATCAAGGATCCTCGTATGTTCTTCCCATTCCTTTACTTCCCCTGCGCTATCTGTGCTCTAGATCGAATTGTTCTTTACGCACGCCTAGTTTCATTCGTTATGCTTTGTTCTGGATCTGA

Coding sequence (CDS)

ATGTTCGTATTCGATAGAGGTAAAGTTATATTCTATTGTAAGAAGCTAGCTATTGAGGAAAAATTGCGGGAAGGAGAAGAGACACTAAGAAAGGGGAAGATGAAGAACTTGGTGAAGACAAAAATTACCAAGCCGGTTAACGATGAGGTGATCAAAGGGATGTATTCTTTCAATGTTGATGAGCTTCTTGTTGGCATTCTTTCAATGCTGGAGAAGAGACAAAAGTTTTTCAGAGAGGATGAAATTGACATGGGGAGTGAGACAGACGCGTGGACAGAACAATTAATGGACTCGTGGCTCGAAAAGATGGACGCTCGCTGGCAGGCAGAGGTCTCTATCATGTGGCTTAGAATGGTTGTCTTCTCTGATCTTGCACTTCTCACCCTACTCTTCGTCTCCTCTGCCATTGCATCCTCCGATGTCCCTTTCATTGTTGCGCACAAGAAGGCCTCTCTCACTCGCCTCAAATCCGGCGTCGAACGCGTCTCTAACTCCATCGAAATTTACAATCAAGGATCCTCGTATGTTCTTCCCATTCCTTTACTTCCCCTGCGCTATCTGTGCTCTAGATCGAATTGTTCTTTACGCACGCCTAGTTTCATTCGTTATGCTTTGTTCTGGATCTGA

Protein sequence

MFVFDRGKVIFYCKKLAIEEKLREGEETLRKGKMKNLVKTKITKPVNDEVIKGMYSFNVDELLVGILSMLEKRQKFFREDEIDMGSETDAWTEQLMDSWLEKMDARWQAEVSIMWLRMVVFSDLALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPLLPLRYLCSRSNCSLRTPSFIRYALFWI

Homology

[Close]

BLAST of Sed0011025 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-12
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. NCBI nr
Match: XP_022983435.1 (translocon-associated protein subunit beta isoform X2 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-12
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. NCBI nr
Match: XP_023528715.1 (translocon-associated protein subunit beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-12
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 8   LLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 63

[Close]

BLAST of Sed0011025 vs. NCBI nr
Match: KAG7017859.1 (Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-12
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. NCBI nr
Match: XP_022935419.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_022935420.1 translocon-associated protein subunit beta isoform X2 [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-12
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. ExPASy TrEMBL
Match: A0A6J1J5V1 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. ExPASy TrEMBL
Match: A0A6J1FAK9 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111442301 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Sbjct: 13  LLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

[Close]

BLAST of Sed0011025 vs. ExPASy TrEMBL
Match: A0A6J1JKZ0 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111486725 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-11
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL LL VSS IA+SDVPFIVAHKKASLTRLKSG ERVS SI+IYNQGSS    + L
Sbjct: 13  LLALLLVSSTIANSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68

[Close]

BLAST of Sed0011025 vs. ExPASy TrEMBL
Match: A0A6J1EL83 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111435340 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-11
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 126 LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           LL LL VSS IA+SDVPFIVAHKKASLTRLKSG ERVS SI+IYNQGSS    + L
Sbjct: 13  LLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68

[Close]

BLAST of Sed0011025 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 125 ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Sbjct: 12  AMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTL 68

[Close]

BLAST of Sed0011025 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 125 ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Sbjct: 12  AMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTL 68

[Close]

BLAST of Sed0011025 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 125 ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Sbjct: 12  AMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTL 68

[Close]

BLAST of Sed0011025 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 125 ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL 182
           A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Sbjct: 12  AMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTL 68

The following BLAST results are available for this feature:

BLAST of Sed0011025 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983434.1	2.2e-12	82.14	translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]	[more]
XP_022983435.1	2.2e-12	82.14	translocon-associated protein subunit beta isoform X2 [Cucurbita maxima]	[more]
XP_023528715.1	6.5e-12	80.36	translocon-associated protein subunit beta [Cucurbita pepo subsp. pepo]	[more]
KAG7017859.1	6.5e-12	80.36	Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022935419.1	6.5e-12	80.36	translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_0...	[more]

BLAST of Sed0011025 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7C6	1.1e-12	82.14	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1J5V1	1.1e-12	82.14	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FAK9	3.2e-12	80.36	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JKZ0	3.5e-11	76.79	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EL83	3.5e-11	76.79	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Sed0011025 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14030.1	2.2e-10	56.14	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.2	2.2e-10	56.14	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.3	2.2e-10	56.14	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.4	2.2e-10	56.14	translocon-associated protein beta (TRAPB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 129..178 e-value: 3.5E-8 score: 33.1
None	No IPR available	PANTHER	PTHR12861:SF7	TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA-LIKE	coord: 124..176
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 124..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011025.1	Sed0011025.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane