Sed0010985 (gene) Chayote v1

Overview


Name	Sed0010985
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	LG13: 5729244 .. 5730069 (+)
RNA-Seq Expression	Sed0010985
Synteny	Sed0010985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAAAAAAAAAAAAAACTGAGAGCCAAGAGCATGGCGTCCTCCATTTCCTTGCCATCTTCCCTGAAATCCACCTTCCTCGGCCAAAACCACCGCCGCCGCCGGCGATTCCCCCTTCCGCCAAGCCGTAACGCTCTCCGCCCCTCCGCCAAATTCGACCTATCCCAACTCCTGGGCGGAAGAGGCCTGTGCAACGGCGAGCAAGGACTCAAGCAAGAGCTCAAAAGAACAGTCGAAAAGACTCCAACCGAAACCAGCCGCGCGATTCCAGAATCGTCCGAGAAATTAAACGTAGCAGAGGAGGGATTCGAGAAGGAATTGCTAGGACTAACCGGCGGGTTCCCGGGCGGAGAGAAGGGGCTGAGGAAATTCCTAGCGGAAAACCCCCCTCCCGCTCCGAAACCGCGATTGGTTAAGCAGAGGAAGGCGGAGCCGCCAGATCTGCCGCTGCTGCTGCCGGGAATGATGGCGATCGTGAAGAATCGGAACAGCCCCTACTACATGTACTGCGGGATTGTGCAGAGGATTACGGACGGGAAGGCGGGGGTGCTGTTCGAAGGGGGGAATTGGGATCGCTTGATCACCTTCAGGTTGGAGGAGCTTGAGCGAAGAGAAAAAGGTCCGCCCATGAAGAGCCCCAGATCTGCTCTTCTAGAACCGCTTCTTCAAAATGATCCCTCCTGATTTTCGATCCCTAATCCTAAACTTTTCTCTTTTTCTTGAAAAAAATGTCTGTATATTCTTAATCCAACAAACAGCTTCATTTTCATTTGTAATTAACCACTTTTTTTTTATAATTATTGTCTAAATTTCATTAATATAATAA

mRNA sequence

AGTAAAAAAAAAAAAAAACTGAGAGCCAAGAGCATGGCGTCCTCCATTTCCTTGCCATCTTCCCTGAAATCCACCTTCCTCGGCCAAAACCACCGCCGCCGCCGGCGATTCCCCCTTCCGCCAAGCCGTAACGCTCTCCGCCCCTCCGCCAAATTCGACCTATCCCAACTCCTGGGCGGAAGAGGCCTGTGCAACGGCGAGCAAGGACTCAAGCAAGAGCTCAAAAGAACAGTCGAAAAGACTCCAACCGAAACCAGCCGCGCGATTCCAGAATCGTCCGAGAAATTAAACGTAGCAGAGGAGGGATTCGAGAAGGAATTGCTAGGACTAACCGGCGGGTTCCCGGGCGGAGAGAAGGGGCTGAGGAAATTCCTAGCGGAAAACCCCCCTCCCGCTCCGAAACCGCGATTGGTTAAGCAGAGGAAGGCGGAGCCGCCAGATCTGCCGCTGCTGCTGCCGGGAATGATGGCGATCGTGAAGAATCGGAACAGCCCCTACTACATGTACTGCGGGATTGTGCAGAGGATTACGGACGGGAAGGCGGGGGTGCTGTTCGAAGGGGGGAATTGGGATCGCTTGATCACCTTCAGGTTGGAGGAGCTTGAGCGAAGAGAAAAAGGTCCGCCCATGAAGAGCCCCAGATCTGCTCTTCTAGAACCGCTTCTTCAAAATGATCCCTCCTGATTTTCGATCCCTAATCCTAAACTTTTCTCTTTTTCTTGAAAAAAATGTCTGTATATTCTTAATCCAACAAACAGCTTCATTTTCATTTGTAATTAACCACTTTTTTTTTATAATTATTGTCTAAATTTCATTAATATAATAA

Coding sequence (CDS)

ATGGCGTCCTCCATTTCCTTGCCATCTTCCCTGAAATCCACCTTCCTCGGCCAAAACCACCGCCGCCGCCGGCGATTCCCCCTTCCGCCAAGCCGTAACGCTCTCCGCCCCTCCGCCAAATTCGACCTATCCCAACTCCTGGGCGGAAGAGGCCTGTGCAACGGCGAGCAAGGACTCAAGCAAGAGCTCAAAAGAACAGTCGAAAAGACTCCAACCGAAACCAGCCGCGCGATTCCAGAATCGTCCGAGAAATTAAACGTAGCAGAGGAGGGATTCGAGAAGGAATTGCTAGGACTAACCGGCGGGTTCCCGGGCGGAGAGAAGGGGCTGAGGAAATTCCTAGCGGAAAACCCCCCTCCCGCTCCGAAACCGCGATTGGTTAAGCAGAGGAAGGCGGAGCCGCCAGATCTGCCGCTGCTGCTGCCGGGAATGATGGCGATCGTGAAGAATCGGAACAGCCCCTACTACATGTACTGCGGGATTGTGCAGAGGATTACGGACGGGAAGGCGGGGGTGCTGTTCGAAGGGGGGAATTGGGATCGCTTGATCACCTTCAGGTTGGAGGAGCTTGAGCGAAGAGAAAAAGGTCCGCCCATGAAGAGCCCCAGATCTGCTCTTCTAGAACCGCTTCTTCAAAATGATCCCTCCTGA

Protein sequence

MASSISLPSSLKSTFLGQNHRRRRRFPLPPSRNALRPSAKFDLSQLLGGRGLCNGEQGLKQELKRTVEKTPTETSRAIPESSEKLNVAEEGFEKELLGLTGGFPGGEKGLRKFLAENPPPAPKPRLVKQRKAEPPDLPLLLPGMMAIVKNRNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQNDPS

Homology

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BLAST of Sed0010985 vs. NCBI nr
Match: XP_038902579.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902587.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902595.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902601.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902605.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 170/239 (71.13%), Postives = 191/239 (79.92%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGG 60
           MASSISLP+     LKSTFLGQN RR    R FPLP    P+ +A RPSA FDL+QLLGG
Sbjct: 1   MASSISLPTPQTPLLKSTFLGQNRRRFLLHRPFPLPHRASPTHHAFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEQGLKQELKRTVEKTPTETSRAIPESSEKL---NVAEEGFEKELLGLTGGFPGG 120
           RGLCNGE+GLK+ELKR VE  P      IPE+SEKL    V E+GFEKEL+GLTGGFPGG
Sbjct: 61  RGLCNGERGLKEELKRNVEDNPVADGGEIPETSEKLAVDRVPEDGFEKELMGLTGGFPGG 120

Query: 121 EKGLRKFLAENPPPAPKPR-----------LVKQRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           EKGLRKF++ENPPP P+P+           ++  +K +PPDLPLLLPGM+AIVKN N+PY
Sbjct: 121 EKGLRKFISENPPPPPRPKPSASNSSEIGAILSSQKPKPPDLPLLLPGMIAIVKNPNNPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEPLLQND
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 239

[Close]

BLAST of Sed0010985 vs. NCBI nr
Match: XP_022136461.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Momordica charantia])

HSP 1 Score: 308.9 bits (790), Expect = 3.4e-80
Identity = 164/238 (68.91%), Postives = 186/238 (78.15%), Query Frame = 0


Query: 1   MASSISLPS-SLKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGGRGL 60
           MASSISLP+  LKSTFLGQN RR    RRFPLP     S    RP+A+FDL QLLGGRGL
Sbjct: 1   MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL 60

Query: 61  CNGEQGLKQELKRTVEKTPTETSRAIPESSEK---LNVAEEGFEKELLGLTGGFPGGEKG 120
           CNGE+GL++ELKR V + P E    IPE  EK     V+E+GFEKEL+GLTGGFPGGEKG
Sbjct: 61  CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG 120

Query: 121 LRKFLAENPPPAPKPR-------------LVKQRKAEPPDLPLLLPGMMAIVKNRNSPYY 180
           LRKF++ENPPP P P+             ++  +K +PPDLPLLLPGM+AIVKN N+PYY
Sbjct: 121 LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of Sed0010985 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-78
Identity = 171/239 (71.55%), Postives = 189/239 (79.08%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGG 60
           MASSISLPS     LKSTFLGQ  RR    R+FPLP    PS +  RPSA FDL+QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60

Query: 61  RGLCNGEQGLKQELKRTVEKTPTETSRA-IPESSEKL---NVAEEGFEKELLGLTGGFPG 120
           RGLCNGE+GLK+ELKR V +   ET  A IPE++EKL    V E+GF+KEL+GLTGGFPG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE---ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPG 120

Query: 121 GEKGLRKFLAEN-PPPAPKPRLVK---------QRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GEKGLRKF++EN PPP PKP   K          +K +PPDLPLLLPGM+AIVKN NSPY
Sbjct: 121 GEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 236

[Close]

BLAST of Sed0010985 vs. NCBI nr
Match: KAG6600515.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301.2 bits (770), Expect = 7.1e-78
Identity = 170/239 (71.13%), Postives = 189/239 (79.08%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGG 60
           MASSISLPS     LKSTFLG+  RR    R+FPLP    PS +  RPSA FDL+QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEQGLKQELKRTVEKTPTETSRA-IPESSEKL---NVAEEGFEKELLGLTGGFPG 120
           RGLCNGE+GLK+ELKR V +   ET  A IPE++EKL    V E+GF+KEL+GLTGGFPG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE---ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPG 120

Query: 121 GEKGLRKFLAEN-PPPAPKPRLVK---------QRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GEKGLRKF++EN PPP PKP   K          +K +PPDLPLLLPGM+AIVKN NSPY
Sbjct: 121 GEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 236

[Close]

BLAST of Sed0010985 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 300.8 bits (769), Expect = 9.3e-78
Identity = 170/239 (71.13%), Postives = 188/239 (78.66%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGG 60
           MASSISLPS     LKSTFLG+  RR    R+FPLP    PS +  RPSA FDL+QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEQGLKQELKRTVEKTPTETSRA-IPESSEKL---NVAEEGFEKELLGLTGGFPG 120
           RGLCNGE+GLK+ELKR V +   ET  A IPE++EKL    V E+GF+KEL+GLTGGFPG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE---ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPG 120

Query: 121 GEKGLRKFLAEN-PPPAPKPRLVK---------QRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GEKGLRKF+ EN PPP PKP   K          +K +PPDLPLLLPGM+AIVKN NSPY
Sbjct: 121 GEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 236

[Close]

BLAST of Sed0010985 vs. ExPASy Swiss-Prot
Match: Q9T0A4 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.1e-64
Identity = 132/238 (55.46%), Postives = 169/238 (71.01%), Query Frame = 0


Query: 3   SSISLPSSL----KSTFLGQNHR----RRRRFPLPPSRNAL---RPSAKFDLSQLLGGRG 62
           SSI++P+      +S FLGQ H+     R  FP P  ++ L   +   KF+L +++GGRG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRG 63

Query: 63  LCNGEQGLKQELKRTVEKTP-------TETSRAIPESSEKLNVAEEGFEKELLGLTGGFP 122
           LCNGE+G+++EL+R +E           ET R   +S+    V E+GFEKE++GLTGGFP
Sbjct: 64  LCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGFP 123

Query: 123 GGEKGLRKFLAENPPPAPKPRLVKQ----------RKAEPPDLPLLLPGMMAIVKNRNSP 182
           GGEKGL+ F+ +NPPP P P   KQ          +K + P LPLL+PGM+AIVKN+NSP
Sbjct: 124 GGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNSP 183

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQ 213
           Y+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP K+P+S +LEPL++
Sbjct: 184 YHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

[Close]

BLAST of Sed0010985 vs. ExPASy TrEMBL
Match: A0A6J1C3K2 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008167 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.7e-80
Identity = 164/238 (68.91%), Postives = 186/238 (78.15%), Query Frame = 0


Query: 1   MASSISLPS-SLKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGGRGL 60
           MASSISLP+  LKSTFLGQN RR    RRFPLP     S    RP+A+FDL QLLGGRGL
Sbjct: 1   MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL 60

Query: 61  CNGEQGLKQELKRTVEKTPTETSRAIPESSEK---LNVAEEGFEKELLGLTGGFPGGEKG 120
           CNGE+GL++ELKR V + P E    IPE  EK     V+E+GFEKEL+GLTGGFPGGEKG
Sbjct: 61  CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG 120

Query: 121 LRKFLAENPPPAPKPR-------------LVKQRKAEPPDLPLLLPGMMAIVKNRNSPYY 180
           LRKF++ENPPP P P+             ++  +K +PPDLPLLLPGM+AIVKN N+PYY
Sbjct: 121 LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of Sed0010985 vs. ExPASy TrEMBL
Match: A0A6J1IWU0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481312 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.5e-78
Identity = 170/239 (71.13%), Postives = 188/239 (78.66%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGG 60
           MASSISLPS     LKSTFLG+  RR    R+FPLP    PS +  RPSA FDL+QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEQGLKQELKRTVEKTPTETSRA-IPESSEKL---NVAEEGFEKELLGLTGGFPG 120
           RGLCNGE+GLK+ELKR V +   ET  A IPE++EKL    V E+GF+KEL+GLTGGFPG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE---ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPG 120

Query: 121 GEKGLRKFLAEN-PPPAPKPRLVK---------QRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GEKGLRKF+ EN PPP PKP   K          +K +PPDLPLLLPGM+AIVKN NSPY
Sbjct: 121 GEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 236

[Close]

BLAST of Sed0010985 vs. ExPASy TrEMBL
Match: A0A6J1FWM0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448039 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.2e-77
Identity = 169/239 (70.71%), Postives = 188/239 (78.66%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP----PSRNALRPSAKFDLSQLLGG 60
           MASSISLPS     LKSTFLG+  RR    R+FPLP    PS +  RPSA FDL+QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEQGLKQELKRTVEKTPTETSRA-IPESSEKL---NVAEEGFEKELLGLTGGFPG 120
           RGLCNGE+GL +ELKR V +   ET  A IPE++EKL    V E+GF+KEL+GLTGGFPG
Sbjct: 61  RGLCNGEKGLNEELKRNVVE---ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPG 120

Query: 121 GEKGLRKFLAEN-PPPAPKPRLVK---------QRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GEKGLRKF++EN PPP PKP   K          +K +PPDLPLLLPGM+AIVKN NSPY
Sbjct: 121 GEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEPLLQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 236

[Close]

BLAST of Sed0010985 vs. ExPASy TrEMBL
Match: A0A5D3CYY1 (NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003910 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.1e-75
Identity = 161/239 (67.36%), Postives = 184/239 (76.99%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP-----PSRNALRPSAKFDLSQLLG 60
           MASSISLPS     LKS+FL QN RR    R FPLP      + +A RPSA FDL+QLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEQGLKQELKRTVEKTPT-ETSRAIPESSEKL---NVAEEGFEKELLGLTGGFP 120
           GRGLCNGE+G+++ELKR V+  P       IPE+S KL   +V E+GFEKEL+GLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFLAENPPPAPKP---------RLVKQRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GGEKGL+KF++ENPPP  KP          ++   K +PPDLPLLLPGM+AIVKN N+PY
Sbjct: 121 GGEKGLKKFISENPPPR-KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEP LQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 238

[Close]

BLAST of Sed0010985 vs. ExPASy TrEMBL
Match: A0A1S3BSR5 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.1e-75
Identity = 161/239 (67.36%), Postives = 184/239 (76.99%), Query Frame = 0


Query: 1   MASSISLPSS----LKSTFLGQNHRR---RRRFPLP-----PSRNALRPSAKFDLSQLLG 60
           MASSISLPS     LKS+FL QN RR    R FPLP      + +A RPSA FDL+QLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEQGLKQELKRTVEKTPT-ETSRAIPESSEKL---NVAEEGFEKELLGLTGGFP 120
           GRGLCNGE+G+++ELKR V+  P       IPE+S KL   +V E+GFEKEL+GLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFLAENPPPAPKP---------RLVKQRKAEPPDLPLLLPGMMAIVKNRNSPY 180
           GGEKGL+KF++ENPPP  KP          ++   K +PPDLPLLLPGM+AIVKN N+PY
Sbjct: 121 GGEKGLKKFISENPPPR-KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQND 215
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMK+PRSA+LEP LQ D
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 238

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BLAST of Sed0010985 vs. TAIR 10
Match: AT4G23890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). )

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-65
Identity = 132/238 (55.46%), Postives = 169/238 (71.01%), Query Frame = 0


Query: 3   SSISLPSSL----KSTFLGQNHR----RRRRFPLPPSRNAL---RPSAKFDLSQLLGGRG 62
           SSI++P+      +S FLGQ H+     R  FP P  ++ L   +   KF+L +++GGRG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRG 63

Query: 63  LCNGEQGLKQELKRTVEKTP-------TETSRAIPESSEKLNVAEEGFEKELLGLTGGFP 122
           LCNGE+G+++EL+R +E           ET R   +S+    V E+GFEKE++GLTGGFP
Sbjct: 64  LCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGFP 123

Query: 123 GGEKGLRKFLAENPPPAPKPRLVKQ----------RKAEPPDLPLLLPGMMAIVKNRNSP 182
           GGEKGL+ F+ +NPPP P P   KQ          +K + P LPLL+PGM+AIVKN+NSP
Sbjct: 124 GGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNSP 183

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKSPRSALLEPLLQ 213
           Y+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP K+P+S +LEPL++
Sbjct: 184 YHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

The following BLAST results are available for this feature:

BLAST of Sed0010985 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902579.1	1.1e-83	71.13	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_...	[more]
XP_022136461.1	3.4e-80	68.91	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Momordica charantia]	[more]
XP_023553886.1	1.9e-78	71.55	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
KAG6600515.1	7.1e-78	71.13	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argy...	[more]
XP_022982522.1	9.3e-78	71.13	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]

BLAST of Sed0010985 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0A4	2.1e-64	55.46	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Sed0010985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3K2	1.7e-80	68.91	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia O...	[more]
A0A6J1IWU0	4.5e-78	71.13	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FWM0	2.2e-77	70.71	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A5D3CYY1	2.1e-75	67.36	NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSR5	2.1e-75	67.36	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]

BLAST of Sed0010985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23890.1	1.5e-65	55.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 140..191 e-value: 2.5E-28 score: 97.4
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 1..213
None	No IPR available	GENE3D	2.30.30.140		coord: 135..204 e-value: 3.7E-32 score: 111.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010985.1	Sed0010985.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain