Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCTCGCCGATCGCCGGAACCCTTTCAACGGCCGCCAACAACGGCCTTACCTTCGCCAAATTCCTCAACCGCCTCGATTCCGTATCCAATCACTCCATCTCCGCCGCCGATTCAATCGCCGACCACATCCCGCCGTCTTCCGCCGCCGGATCTCTACAATTATCAGCCGCACTGTTCCCCGTCGCCACCATCGCTCCCCCGCCGATCCGAACGTTTCTCCGTAGAAAGCGCCGTACATAGCGTAGATCGTACATAATTTCGTTTATGAAGTGGTTTATTGGATTGCGCTTTCGAATTGTGTTCATTTTGCTGTTTGAGATTTGCAGCTGATGCAATTGGGAGCTCAGAAAGGGGGAAATTATCGATCAGATTAACTCTGCTATTAAAGGGTACAATTCTCTTCTTATTCATCAATCTCCTTGAATTAAAATTGAGTATAAATCTGTTGTGTTCAATTGATAATTGCTCTGTATATTTTGTAAATATTCACATTGTTTTATCTAAGTAAATTTGTTCAAAATGGAAATCTGGCGTATTATTTCTTTTATGAAGTTGTTTGTTTGATTGCACTCTCGAATTATGTTCATTTTGCGTTTGAGATTGTTGTTAGATTTGCAGCTGATGCAATTGGGTACTTCAAAAAGGGGAAATTTTGTTTCCAAGAAGTGCACAGAGTTTGA
mRNA sequence
ATGGAAACCTCGCCGATCGCCGGAACCCTTTCAACGGCCGCCAACAACGGCCTTACCTTCGCCAAATTCCTCAACCGCCTCGATTCCGTATCCAATCACTCCATCTCCGCCGCCGATTCAATCGCCGACCACATCCCGCCGTCTTCCGCCGCCGGATCTCTACAATTATCAGCCGCACTGTTCCCCGTCGCCACCATCGCTCCCCCGCCGATCCGAACGTTTCTCCGTAGAAAGCGCCGTACATATAAATTTGTTCAAAATGGAAATCTGGCGTATTATTTCTTTTATGAAGTTGTTTGTTTGATTGCACTCTCGAATTATGTTCATTTTGCGTTTGAGATTGTTGTTAGATTTGCAGCTGATGCAATTGGGTACTTCAAAAAGGGGAAATTTTGTTTCCAAGAAGTGCACAGAGTTTGA
Coding sequence (CDS)
ATGGAAACCTCGCCGATCGCCGGAACCCTTTCAACGGCCGCCAACAACGGCCTTACCTTCGCCAAATTCCTCAACCGCCTCGATTCCGTATCCAATCACTCCATCTCCGCCGCCGATTCAATCGCCGACCACATCCCGCCGTCTTCCGCCGCCGGATCTCTACAATTATCAGCCGCACTGTTCCCCGTCGCCACCATCGCTCCCCCGCCGATCCGAACGTTTCTCCGTAGAAAGCGCCGTACATATAAATTTGTTCAAAATGGAAATCTGGCGTATTATTTCTTTTATGAAGTTGTTTGTTTGATTGCACTCTCGAATTATGTTCATTTTGCGTTTGAGATTGTTGTTAGATTTGCAGCTGATGCAATTGGGTACTTCAAAAAGGGGAAATTTTGTTTCCAAGAAGTGCACAGAGTTTGA
Protein sequence
METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAALFPVATIAPPPIRTFLRRKRRTYKFVQNGNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAADAIGYFKKGKFCFQEVHRV
Homology
BLAST of Sed0010921 vs. NCBI nr
Match:
XP_022138602.1 (uncharacterized protein LOC111009719 [Momordica charantia])
HSP 1 Score: 150.6 bits (379), Expect = 1.0e-32
Identity = 97/189 (51.32%), Postives = 112/189 (59.26%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M++S +AGTLS AANNGL FAKFLNRLD VSN+ +SA+DSI + IPPSSAAG+LQLSAAL
Sbjct: 1 MDSSLVAGTLSMAANNGLGFAKFLNRLDFVSNYCVSASDSITEQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFVQN------------------------ 120
FPVATIAPPP+ RTFLRRKRRT + + +
Sbjct: 61 FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEDDGFGGDNFDGSYGGGG 120
Query: 121 --------------------------GNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAAD 131
N AYYF YEVVC IALSN VHFAF+ VVRFAAD
Sbjct: 121 GGSGRGWNFDRFGGNDWDESSSSSSPSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAD 180
BLAST of Sed0010921 vs. NCBI nr
Match:
KAG6575084.1 (hypothetical protein SDJN03_25723, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013655.1 hypothetical protein SDJN02_23822, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 96/191 (50.26%), Postives = 110/191 (57.59%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSS AG+LQLSAAL
Sbjct: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFVQNG----------------------- 120
FPVATIAPPP+ RTFLRRKRRT + + +G
Sbjct: 61 FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDSEGDEDNGFDGGDFDGPYGGD 120
Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. NCBI nr
Match:
XP_023548774.1 (uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 97/191 (50.79%), Postives = 111/191 (58.12%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSSAAG+LQLSAAL
Sbjct: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFV----------QNG------------- 120
FPVATIAPPP+ RTFLRRKRRT + + NG
Sbjct: 61 FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDGGDFDGPYGGD 120
Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
N AYYF YEV+C IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGSDWDESSSSSTSLNPAYYFVYEVICWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. NCBI nr
Match:
XP_023006205.1 (uncharacterized protein LOC111499005 [Cucurbita maxima])
HSP 1 Score: 144.8 bits (364), Expect = 5.5e-31
Identity = 97/191 (50.79%), Postives = 110/191 (57.59%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSSAAG+LQLS AL
Sbjct: 1 MDTSLVAGTLSIVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSVAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFV----------QNG------------- 120
FPVATIAPPP+ RTFLRRKRRT + + NG
Sbjct: 61 FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDCGDFDGPYGGD 120
Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGNDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. NCBI nr
Match:
XP_022959163.1 (uncharacterized protein LOC111460236 [Cucurbita moschata])
HSP 1 Score: 144.4 bits (363), Expect = 7.2e-31
Identity = 95/191 (49.74%), Postives = 109/191 (57.07%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNRLD +SN+S SA DSI D IPPSSAAG+LQLSAAL
Sbjct: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFVQNG----------------------- 120
FPVATIAPPP+ R FLRRKRRT + + +G
Sbjct: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. ExPASy TrEMBL
Match:
A0A6J1CBL0 (uncharacterized protein LOC111009719 OS=Momordica charantia OX=3673 GN=LOC111009719 PE=4 SV=1)
HSP 1 Score: 150.6 bits (379), Expect = 4.8e-33
Identity = 97/189 (51.32%), Postives = 112/189 (59.26%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M++S +AGTLS AANNGL FAKFLNRLD VSN+ +SA+DSI + IPPSSAAG+LQLSAAL
Sbjct: 1 MDSSLVAGTLSMAANNGLGFAKFLNRLDFVSNYCVSASDSITEQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFVQN------------------------ 120
FPVATIAPPP+ RTFLRRKRRT + + +
Sbjct: 61 FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEDDGFGGDNFDGSYGGGG 120
Query: 121 --------------------------GNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAAD 131
N AYYF YEVVC IALSN VHFAF+ VVRFAAD
Sbjct: 121 GGSGRGWNFDRFGGNDWDESSSSSSPSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAD 180
BLAST of Sed0010921 vs. ExPASy TrEMBL
Match:
A0A6J1KZI4 (uncharacterized protein LOC111499005 OS=Cucurbita maxima OX=3661 GN=LOC111499005 PE=4 SV=1)
HSP 1 Score: 144.8 bits (364), Expect = 2.7e-31
Identity = 97/191 (50.79%), Postives = 110/191 (57.59%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSSAAG+LQLS AL
Sbjct: 1 MDTSLVAGTLSIVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSVAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFV----------QNG------------- 120
FPVATIAPPP+ RTFLRRKRRT + + NG
Sbjct: 61 FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDCGDFDGPYGGD 120
Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGNDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. ExPASy TrEMBL
Match:
A0A6J1H560 (uncharacterized protein LOC111460236 OS=Cucurbita moschata OX=3662 GN=LOC111460236 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 3.5e-31
Identity = 95/191 (49.74%), Postives = 109/191 (57.07%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNRLD +SN+S SA DSI D IPPSSAAG+LQLSAAL
Sbjct: 1 MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFVQNG----------------------- 120
FPVATIAPPP+ R FLRRKRRT + + +G
Sbjct: 61 FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120
Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. ExPASy TrEMBL
Match:
A0A0A0KG90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 9.4e-29
Identity = 90/195 (46.15%), Postives = 106/195 (54.36%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M++S +AGTLS ANN + FAK LNRLD VSN+ IS DSI D IPPSS A +L+LSAAL
Sbjct: 1 MDSSLVAGTLSMVANNSIGFAKLLNRLDFVSNYCISVTDSITDQIPPSSTAAALRLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFV-------------------------- 120
FPVATIAPPP+ RTFLRRKRRT + +
Sbjct: 61 FPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSEGREDDGFGGGDFDGPIGGDG 120
Query: 121 --------------------------QNGNLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 135
+ N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGSGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180
BLAST of Sed0010921 vs. ExPASy TrEMBL
Match:
A0A6J1EWH7 (uncharacterized protein LOC111436769 OS=Cucurbita moschata OX=3662 GN=LOC111436769 PE=4 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 91/187 (48.66%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 1 METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
M+TS +AGTLS ANNG+ FAKFLNR D VSN+ ISA DSIAD I P SAAG+LQLSAAL
Sbjct: 1 MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60
Query: 61 FPVATIAPPPI---------RTFLRRKRRTYKFV-------------------------- 120
FPVATIAPPP+ RTFLRRKRRT + +
Sbjct: 61 FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEVNGFGGGDFDGSYGGGG 120
Query: 121 ----------------------QNGNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAADAI 131
+ N AYYF YEVV IALSN VHFAF+ V+RFA +AI
Sbjct: 121 GSGGSGWNFDRFGGSDWEESPSSSSNPAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180
BLAST of Sed0010921 vs. TAIR 10
Match:
AT3G06780.1 (glycine-rich protein )
HSP 1 Score: 60.8 bits (146), Expect = 9.7e-10
Identity = 63/191 (32.98%), Postives = 81/191 (42.41%), Query Frame = 0
Query: 1 METSPIAGTLST-AANNGLTFAK-FLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSA 60
ME S IA T++ A G+ F K L RLD ++NH IS ADS+ DH P G +Q SA
Sbjct: 1 MEFSLIADTVTVCTAKQGIAFGKSLLQRLD-LANH-ISFADSVVDHQSP--GGGIVQASA 60
Query: 61 ALFPVATIAPPPIRTF-------LRRKRRTY---------------KFVQNGNL------ 120
+FPV IAPPP+R+ +R+KRRT +F+ G+
Sbjct: 61 IIFPVDAIAPPPVRSSSYKTIRRIRKKRRTRRVSFGGDGDDAGDFGRFLLEGDFGGSDGP 120
Query: 121 ----------------------------------------AYYFFYEVVCLIALSNYVHF 122
A F YEV+C IALSN VHF
Sbjct: 121 FGFGGGGNDGGGKGWNYGGGGGGFGRDNWDGSSFSSWSDPAMEFVYEVICWIALSNCVHF 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022138602.1 | 1.0e-32 | 51.32 | uncharacterized protein LOC111009719 [Momordica charantia] | [more] |
KAG6575084.1 | 1.4e-31 | 50.26 | hypothetical protein SDJN03_25723, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023548774.1 | 2.5e-31 | 50.79 | uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo] | [more] |
XP_023006205.1 | 5.5e-31 | 50.79 | uncharacterized protein LOC111499005 [Cucurbita maxima] | [more] |
XP_022959163.1 | 7.2e-31 | 49.74 | uncharacterized protein LOC111460236 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CBL0 | 4.8e-33 | 51.32 | uncharacterized protein LOC111009719 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
A0A6J1KZI4 | 2.7e-31 | 50.79 | uncharacterized protein LOC111499005 OS=Cucurbita maxima OX=3661 GN=LOC111499005... | [more] |
A0A6J1H560 | 3.5e-31 | 49.74 | uncharacterized protein LOC111460236 OS=Cucurbita moschata OX=3662 GN=LOC1114602... | [more] |
A0A0A0KG90 | 9.4e-29 | 46.15 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1 | [more] |
A0A6J1EWH7 | 1.6e-28 | 48.66 | uncharacterized protein LOC111436769 OS=Cucurbita moschata OX=3662 GN=LOC1114367... | [more] |
Match Name | E-value | Identity | Description | |
AT3G06780.1 | 9.7e-10 | 32.98 | glycine-rich protein | [more] |