Sed0010921 (gene) Chayote v1

Overview
NameSed0010921
Typegene
OrganismSechium edule (Chayote v1)
DescriptionmRNA, clone: RTFL01-07-K18
LocationLG09: 2106827 .. 2107512 (-)
RNA-Seq ExpressionSed0010921
SyntenySed0010921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCTCGCCGATCGCCGGAACCCTTTCAACGGCCGCCAACAACGGCCTTACCTTCGCCAAATTCCTCAACCGCCTCGATTCCGTATCCAATCACTCCATCTCCGCCGCCGATTCAATCGCCGACCACATCCCGCCGTCTTCCGCCGCCGGATCTCTACAATTATCAGCCGCACTGTTCCCCGTCGCCACCATCGCTCCCCCGCCGATCCGAACGTTTCTCCGTAGAAAGCGCCGTACATAGCGTAGATCGTACATAATTTCGTTTATGAAGTGGTTTATTGGATTGCGCTTTCGAATTGTGTTCATTTTGCTGTTTGAGATTTGCAGCTGATGCAATTGGGAGCTCAGAAAGGGGGAAATTATCGATCAGATTAACTCTGCTATTAAAGGGTACAATTCTCTTCTTATTCATCAATCTCCTTGAATTAAAATTGAGTATAAATCTGTTGTGTTCAATTGATAATTGCTCTGTATATTTTGTAAATATTCACATTGTTTTATCTAAGTAAATTTGTTCAAAATGGAAATCTGGCGTATTATTTCTTTTATGAAGTTGTTTGTTTGATTGCACTCTCGAATTATGTTCATTTTGCGTTTGAGATTGTTGTTAGATTTGCAGCTGATGCAATTGGGTACTTCAAAAAGGGGAAATTTTGTTTCCAAGAAGTGCACAGAGTTTGA

mRNA sequence

ATGGAAACCTCGCCGATCGCCGGAACCCTTTCAACGGCCGCCAACAACGGCCTTACCTTCGCCAAATTCCTCAACCGCCTCGATTCCGTATCCAATCACTCCATCTCCGCCGCCGATTCAATCGCCGACCACATCCCGCCGTCTTCCGCCGCCGGATCTCTACAATTATCAGCCGCACTGTTCCCCGTCGCCACCATCGCTCCCCCGCCGATCCGAACGTTTCTCCGTAGAAAGCGCCGTACATATAAATTTGTTCAAAATGGAAATCTGGCGTATTATTTCTTTTATGAAGTTGTTTGTTTGATTGCACTCTCGAATTATGTTCATTTTGCGTTTGAGATTGTTGTTAGATTTGCAGCTGATGCAATTGGGTACTTCAAAAAGGGGAAATTTTGTTTCCAAGAAGTGCACAGAGTTTGA

Coding sequence (CDS)

ATGGAAACCTCGCCGATCGCCGGAACCCTTTCAACGGCCGCCAACAACGGCCTTACCTTCGCCAAATTCCTCAACCGCCTCGATTCCGTATCCAATCACTCCATCTCCGCCGCCGATTCAATCGCCGACCACATCCCGCCGTCTTCCGCCGCCGGATCTCTACAATTATCAGCCGCACTGTTCCCCGTCGCCACCATCGCTCCCCCGCCGATCCGAACGTTTCTCCGTAGAAAGCGCCGTACATATAAATTTGTTCAAAATGGAAATCTGGCGTATTATTTCTTTTATGAAGTTGTTTGTTTGATTGCACTCTCGAATTATGTTCATTTTGCGTTTGAGATTGTTGTTAGATTTGCAGCTGATGCAATTGGGTACTTCAAAAAGGGGAAATTTTGTTTCCAAGAAGTGCACAGAGTTTGA

Protein sequence

METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAALFPVATIAPPPIRTFLRRKRRTYKFVQNGNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAADAIGYFKKGKFCFQEVHRV
Homology
BLAST of Sed0010921 vs. NCBI nr
Match: XP_022138602.1 (uncharacterized protein LOC111009719 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-32
Identity = 97/189 (51.32%), Postives = 112/189 (59.26%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M++S +AGTLS AANNGL FAKFLNRLD VSN+ +SA+DSI + IPPSSAAG+LQLSAAL
Sbjct: 1   MDSSLVAGTLSMAANNGLGFAKFLNRLDFVSNYCVSASDSITEQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFVQN------------------------ 120
           FPVATIAPPP+         RTFLRRKRRT + + +                        
Sbjct: 61  FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEDDGFGGDNFDGSYGGGG 120

Query: 121 --------------------------GNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAAD 131
                                      N AYYF YEVVC IALSN VHFAF+ VVRFAAD
Sbjct: 121 GGSGRGWNFDRFGGNDWDESSSSSSPSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAD 180

BLAST of Sed0010921 vs. NCBI nr
Match: KAG6575084.1 (hypothetical protein SDJN03_25723, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013655.1 hypothetical protein SDJN02_23822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 96/191 (50.26%), Postives = 110/191 (57.59%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSS AG+LQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFVQNG----------------------- 120
           FPVATIAPPP+         RTFLRRKRRT + + +G                       
Sbjct: 61  FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDSEGDEDNGFDGGDFDGPYGGD 120

Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
                                        N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. NCBI nr
Match: XP_023548774.1 (uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 97/191 (50.79%), Postives = 111/191 (58.12%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSSAAG+LQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFV----------QNG------------- 120
           FPVATIAPPP+         RTFLRRKRRT + +           NG             
Sbjct: 61  FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDGGDFDGPYGGD 120

Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
                                        N AYYF YEV+C IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGSDWDESSSSSTSLNPAYYFVYEVICWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. NCBI nr
Match: XP_023006205.1 (uncharacterized protein LOC111499005 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-31
Identity = 97/191 (50.79%), Postives = 110/191 (57.59%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSSAAG+LQLS AL
Sbjct: 1   MDTSLVAGTLSIVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSVAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFV----------QNG------------- 120
           FPVATIAPPP+         RTFLRRKRRT + +           NG             
Sbjct: 61  FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDCGDFDGPYGGD 120

Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
                                        N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGNDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. NCBI nr
Match: XP_022959163.1 (uncharacterized protein LOC111460236 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 7.2e-31
Identity = 95/191 (49.74%), Postives = 109/191 (57.07%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNRLD +SN+S SA DSI D IPPSSAAG+LQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFVQNG----------------------- 120
           FPVATIAPPP+         R FLRRKRRT + + +G                       
Sbjct: 61  FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120

Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
                                        N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. ExPASy TrEMBL
Match: A0A6J1CBL0 (uncharacterized protein LOC111009719 OS=Momordica charantia OX=3673 GN=LOC111009719 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.8e-33
Identity = 97/189 (51.32%), Postives = 112/189 (59.26%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M++S +AGTLS AANNGL FAKFLNRLD VSN+ +SA+DSI + IPPSSAAG+LQLSAAL
Sbjct: 1   MDSSLVAGTLSMAANNGLGFAKFLNRLDFVSNYCVSASDSITEQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFVQN------------------------ 120
           FPVATIAPPP+         RTFLRRKRRT + + +                        
Sbjct: 61  FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEDDGFGGDNFDGSYGGGG 120

Query: 121 --------------------------GNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAAD 131
                                      N AYYF YEVVC IALSN VHFAF+ VVRFAAD
Sbjct: 121 GGSGRGWNFDRFGGNDWDESSSSSSPSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAD 180

BLAST of Sed0010921 vs. ExPASy TrEMBL
Match: A0A6J1KZI4 (uncharacterized protein LOC111499005 OS=Cucurbita maxima OX=3661 GN=LOC111499005 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.7e-31
Identity = 97/191 (50.79%), Postives = 110/191 (57.59%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNRLD +SN+SISA DSI D IPPSSAAG+LQLS AL
Sbjct: 1   MDTSLVAGTLSIVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSAAGALQLSVAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFV----------QNG------------- 120
           FPVATIAPPP+         RTFLRRKRRT + +           NG             
Sbjct: 61  FPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSSDDSEGGEDNGFDCGDFDGPYGGD 120

Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
                                        N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFGGNDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. ExPASy TrEMBL
Match: A0A6J1H560 (uncharacterized protein LOC111460236 OS=Cucurbita moschata OX=3662 GN=LOC111460236 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.5e-31
Identity = 95/191 (49.74%), Postives = 109/191 (57.07%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNRLD +SN+S SA DSI D IPPSSAAG+LQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSFSATDSITDQIPPSSAAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFVQNG----------------------- 120
           FPVATIAPPP+         R FLRRKRRT + + +G                       
Sbjct: 61  FPVATIAPPPVKSISCRSSSRMFLRRKRRTKRRLYSGDDSEGGEDNGFDGGDFDGPYGGD 120

Query: 121 -----------------------------NLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 131
                                        N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. ExPASy TrEMBL
Match: A0A0A0KG90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.4e-29
Identity = 90/195 (46.15%), Postives = 106/195 (54.36%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M++S +AGTLS  ANN + FAK LNRLD VSN+ IS  DSI D IPPSS A +L+LSAAL
Sbjct: 1   MDSSLVAGTLSMVANNSIGFAKLLNRLDFVSNYCISVTDSITDQIPPSSTAAALRLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFV-------------------------- 120
           FPVATIAPPP+         RTFLRRKRRT + +                          
Sbjct: 61  FPVATIAPPPVKSVSYRSASRTFLRRKRRTKRRLYSDDSEGREDDGFGGGDFDGPIGGDG 120

Query: 121 --------------------------QNGNLAYYFFYEVVCLIALSNYVHFAFEIVVRFA 135
                                      + N AYYF YEVVC IALSN VHFAF+ VVRFA
Sbjct: 121 GGSGGGRGWNFDRFGGNDWDESSSSSSSSNPAYYFVYEVVCWIALSNCVHFAFKKVVRFA 180

BLAST of Sed0010921 vs. ExPASy TrEMBL
Match: A0A6J1EWH7 (uncharacterized protein LOC111436769 OS=Cucurbita moschata OX=3662 GN=LOC111436769 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 91/187 (48.66%), Postives = 105/187 (56.15%), Query Frame = 0

Query: 1   METSPIAGTLSTAANNGLTFAKFLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSAAL 60
           M+TS +AGTLS  ANNG+ FAKFLNR D VSN+ ISA DSIAD I P SAAG+LQLSAAL
Sbjct: 1   MDTSLVAGTLSMVANNGVGFAKFLNRFDFVSNYYISATDSIADQIAPYSAAGALQLSAAL 60

Query: 61  FPVATIAPPPI---------RTFLRRKRRTYKFV-------------------------- 120
           FPVATIAPPP+         RTFLRRKRRT + +                          
Sbjct: 61  FPVATIAPPPVKSISRRSASRTFLRRKRRTKRRLYSDDSEGGEVNGFGGGDFDGSYGGGG 120

Query: 121 ----------------------QNGNLAYYFFYEVVCLIALSNYVHFAFEIVVRFAADAI 131
                                  + N AYYF YEVV  IALSN VHFAF+ V+RFA +AI
Sbjct: 121 GSGGSGWNFDRFGGSDWEESPSSSSNPAYYFVYEVVYWIALSNCVHFAFKKVIRFAGEAI 180

BLAST of Sed0010921 vs. TAIR 10
Match: AT3G06780.1 (glycine-rich protein )

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-10
Identity = 63/191 (32.98%), Postives = 81/191 (42.41%), Query Frame = 0

Query: 1   METSPIAGTLST-AANNGLTFAK-FLNRLDSVSNHSISAADSIADHIPPSSAAGSLQLSA 60
           ME S IA T++   A  G+ F K  L RLD ++NH IS ADS+ DH  P    G +Q SA
Sbjct: 1   MEFSLIADTVTVCTAKQGIAFGKSLLQRLD-LANH-ISFADSVVDHQSP--GGGIVQASA 60

Query: 61  ALFPVATIAPPPIRTF-------LRRKRRTY---------------KFVQNGNL------ 120
            +FPV  IAPPP+R+        +R+KRRT                +F+  G+       
Sbjct: 61  IIFPVDAIAPPPVRSSSYKTIRRIRKKRRTRRVSFGGDGDDAGDFGRFLLEGDFGGSDGP 120

Query: 121 ----------------------------------------AYYFFYEVVCLIALSNYVHF 122
                                                   A  F YEV+C IALSN VHF
Sbjct: 121 FGFGGGGNDGGGKGWNYGGGGGGFGRDNWDGSSFSSWSDPAMEFVYEVICWIALSNCVHF 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138602.11.0e-3251.32uncharacterized protein LOC111009719 [Momordica charantia][more]
KAG6575084.11.4e-3150.26hypothetical protein SDJN03_25723, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548774.12.5e-3150.79uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo][more]
XP_023006205.15.5e-3150.79uncharacterized protein LOC111499005 [Cucurbita maxima][more]
XP_022959163.17.2e-3149.74uncharacterized protein LOC111460236 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CBL04.8e-3351.32uncharacterized protein LOC111009719 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1KZI42.7e-3150.79uncharacterized protein LOC111499005 OS=Cucurbita maxima OX=3661 GN=LOC111499005... [more]
A0A6J1H5603.5e-3149.74uncharacterized protein LOC111460236 OS=Cucurbita moschata OX=3662 GN=LOC1114602... [more]
A0A0A0KG909.4e-2946.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318150 PE=4 SV=1[more]
A0A6J1EWH71.6e-2848.66uncharacterized protein LOC111436769 OS=Cucurbita moschata OX=3662 GN=LOC1114367... [more]
Match NameE-valueIdentityDescription
AT3G06780.19.7e-1032.98glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36751F3E22.8 PROTEINcoord: 1..81
coord: 89..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010921.1Sed0010921.1mRNA