Sed0010872 (gene) Chayote v1

Overview


Name	Sed0010872
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG07: 27915722 .. 27916315 (+)
RNA-Seq Expression	Sed0010872
Synteny	Sed0010872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTCAGGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCAATCCTTCCCTTCCTCACCGCGTTTTCAATTGTAATCCTCATCTTCATCTCCATCATCATCTTCTCCGTCCTCGCCTCTATTTCCATTATCGTCTTCATCTACGTCTTTTGCCAATACCTAATTGGCTTGACGAACTTAGATGGGCCCGATCCCAACCTCGAAGCAGGCGCTAGAAACGAAAACCCTATCACACAGACTATGATTTTAGGATCTCATCAAATGCGTGATGGTGGCAATGTGGAGCAGTCTGAAAGCAACGTATGGAGTGAGGCTTTAGAAATAACCATGGCGGAGAGGAAGAGGCTGAAAGAACGAATTCTAGAGAGAACGGCGATGACGGTGAGCTATGGCAGCTCCGAAGCTGCGGCGAAATGCATTGATTGTGCAATCTGTTTGGAGGATTTTGAAAATGGAGAACTTTGCCAGATTTTTCCACTGTGTAAACACATTTTTCATTACTCTTGCATTCAACTTTGGTTGAAGAAGAGCCTGACTTGTCCCATTTGTCGTTGTTCTATTGTGAATGAAAAGGGATTAGATTTGTAA

mRNA sequence

ATGATCCCTCAGGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCAATCCTTCCCTTCCTCACCGCGTTTTCAATTGTAATCCTCATCTTCATCTCCATCATCATCTTCTCCGTCCTCGCCTCTATTTCCATTATCGTCTTCATCTACGTCTTTTGCCAATACCTAATTGGCTTGACGAACTTAGATGGGCCCGATCCCAACCTCGAAGCAGGCGCTAGAAACGAAAACCCTATCACACAGACTATGATTTTAGGATCTCATCAAATGCGTGATGGTGGCAATGTGGAGCAGTCTGAAAGCAACGTATGGAGTGAGGCTTTAGAAATAACCATGGCGGAGAGGAAGAGGCTGAAAGAACGAATTCTAGAGAGAACGGCGATGACGGTGAGCTATGGCAGCTCCGAAGCTGCGGCGAAATGCATTGATTGTGCAATCTGTTTGGAGGATTTTGAAAATGGAGAACTTTGCCAGATTTTTCCACTGTGTAAACACATTTTTCATTACTCTTGCATTCAACTTTGGTTGAAGAAGAGCCTGACTTGTCCCATTTGTCGTTGTTCTATTGTGAATGAAAAGGGATTAGATTTGTAA

Coding sequence (CDS)

ATGATCCCTCAGGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCAATCCTTCCCTTCCTCACCGCGTTTTCAATTGTAATCCTCATCTTCATCTCCATCATCATCTTCTCCGTCCTCGCCTCTATTTCCATTATCGTCTTCATCTACGTCTTTTGCCAATACCTAATTGGCTTGACGAACTTAGATGGGCCCGATCCCAACCTCGAAGCAGGCGCTAGAAACGAAAACCCTATCACACAGACTATGATTTTAGGATCTCATCAAATGCGTGATGGTGGCAATGTGGAGCAGTCTGAAAGCAACGTATGGAGTGAGGCTTTAGAAATAACCATGGCGGAGAGGAAGAGGCTGAAAGAACGAATTCTAGAGAGAACGGCGATGACGGTGAGCTATGGCAGCTCCGAAGCTGCGGCGAAATGCATTGATTGTGCAATCTGTTTGGAGGATTTTGAAAATGGAGAACTTTGCCAGATTTTTCCACTGTGTAAACACATTTTTCATTACTCTTGCATTCAACTTTGGTTGAAGAAGAGCCTGACTTGTCCCATTTGTCGTTGTTCTATTGTGAATGAAAAGGGATTAGATTTGTAA

Protein sequence

MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQTMILGSHQMRDGGNVEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLDL

Homology

[Close]

BLAST of Sed0010872 vs. NCBI nr
Match: KAA0060638.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 8.0e-60
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLT 60
           MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--VEQSESNVWSEALEITMAER 120
           +LD    +LEAG  NEN        ++L  HQ    G   +E+SESN W E +E T+   
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI--- 120

Query: 121 KRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLW 180
                 ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FP+C HIFHYSCIQ W
Sbjct: 121 ------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHW 180

Query: 181 LKKSLTCPICRCSIVNEK 194
           LKK++TCPICRCSIVN+K
Sbjct: 181 LKKNMTCPICRCSIVNDK 189

[Close]

BLAST of Sed0010872 vs. NCBI nr
Match: KAG6600727.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.9 bits (572), Expect = 5.9e-55
Identity = 124/192 (64.58%), Postives = 145/192 (75.52%), Query Frame = 0


Query: 1   MIPQAL-TVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGL 60
           MIPQAL TVPQSNPPPS LPFLTAFSIVI+I ISI+IFS+LAS SII+FI+V CQYLIG 
Sbjct: 1   MIPQALTTVPQSNPPPSTLPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60

Query: 61  TNLDGPDPNLEAGARNENPITQTMILGSHQMRDGGNVEQSESNVWSEALEITMAERKRLK 120
           TNLDG   ++EAG RN+N         +  MR    V + ESN+W EALE TMAERK  +
Sbjct: 61  TNLDGHHLDVEAGERNQNQ--------NQTMRGRSLVSRYESNIWREALERTMAERKGRR 120

Query: 121 ERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKS 180
            +I+ + A  V YG SE AAK  DCAICLE+FENGE CQIF +CKHIFHYSCIQ WL+++
Sbjct: 121 AQIVMKMATRVRYGCSEVAAKYTDCAICLEEFENGEDCQIFVVCKHIFHYSCIQRWLRRN 180

Query: 181 LTCPICRCSIVN 192
           +TCPICR  I N
Sbjct: 181 MTCPICRSPIAN 184

[Close]

BLAST of Sed0010872 vs. NCBI nr
Match: KAG7027690.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 8.8e-51
Identity = 118/189 (62.43%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 9   PQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPN 68
           P  NPPPSILPFLT+FSI+ILIF+SIIIFSVLAS +IIV +Y  C+YL+  T LD  DP 
Sbjct: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPI 63

Query: 69  LEAGARNEN--PITQTMILGSHQMRDGGNVEQSESNVWSEALEITMAERKRLKERILER- 128
           L A  RN+N    T+T IL SH  R GG+VE +    W E L     ERK L+E+ LE+ 
Sbjct: 64  LVADERNQNQSQSTRTRILVSHPTRHGGDVENAS---WREGL-----ERKGLREQALEKT 123

Query: 129 TAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPIC 188
           T + VSYGSSEA AK +DCAICLEDFE GELCQIFP+C HIFHY CIQ WLKK++TCPIC
Sbjct: 124 TTVLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPVCNHIFHYCCIQRWLKKNMTCPIC 183

Query: 189 RCSIVNEKG 195
             SI+ E G
Sbjct: 184 HDSIITESG 184

[Close]

BLAST of Sed0010872 vs. NCBI nr
Match: KAG6577373.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.5 bits (532), Expect = 2.6e-50
Identity = 117/184 (63.59%), Postives = 137/184 (74.46%), Query Frame = 0


Query: 9   PQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPN 68
           P  NPPPSILPFLT+FSI+ILIF+SIIIFSVLAS +IIV +Y  C+YL+  T LD  DP 
Sbjct: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICKYLVHPTYLDEHDPV 63

Query: 69  LEAGARNEN--PITQTMILGSHQMRDGGNVEQSESNVWSEALEITMAERKRLKERILER- 128
           L A  RN+N    T+T IL SH  R GG+VE +    W E L     ERK L+E+ L++ 
Sbjct: 64  LVADERNQNQSQSTRTRILVSHPTRHGGDVENAS---WREGL-----ERKGLREQALKKT 123

Query: 129 TAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPIC 188
           T + VSYGSSEA AK +DCAICLEDFE GELCQIFP+C HIFHY CIQ WLKK++TCPIC
Sbjct: 124 TTVLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPVCNHIFHYCCIQRWLKKNMTCPIC 179

Query: 189 RCSI 190
           RCSI
Sbjct: 184 RCSI 179

[Close]

BLAST of Sed0010872 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.9e-43
Identity = 124/277 (44.77%), Postives = 144/277 (51.99%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLT 60
           MIPQALTVPQSNPPPSILPFLTAFSIVI+IFI+IIIFSV+AS +IIV IYV C+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGPDPNLEAGARNENPITQT---MILGSHQMRDGGN--VEQSESNVWSEALEITMAER 120
           +LDG   NLEAG  NEN +  T   ++L  HQ    G   +E+SESN W E +E T+   
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI--- 120

Query: 121 KRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQ----------------- 180
                 ++E+ A  VSYGSSEAA KCIDCAICLEDFENGELCQ                 
Sbjct: 121 ------MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPGFSESEQRGNRNEE 180

Query: 181 ------------------------------------------------------------ 190
                                                                       
Sbjct: 181 MTMTTTTVATTMVADPEERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLG 240

[Close]

BLAST of Sed0010872 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 105 SEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCK 164
           S A   T+A+R  LK+R L++  +   YGS E      +CAICL +F +GE  ++ P C 
Sbjct: 67  SSAAAGTVADRAGLKKRELKKFPV-AEYGSGEVKIAATECAICLGEFADGERVRVLPPCN 126

Query: 165 HIFHYSCIQLWLKKSLTCPICRCSIV 191
           H FH SCI  WL    +CP CR S++
Sbjct: 127 HSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of Sed0010872 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-11
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 137 AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL 196
           +AA C DCA+CL +FE G+  +  PLC H FH  CI  WL+    CP+CR +I+   G+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGV 207

[Close]

BLAST of Sed0010872 vs. ExPASy Swiss-Prot
Match: Q9C7I1 (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 142 IDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLD 197
           ++CAICL +FE+ E  ++ P C H FH SCI +WL    TCP+CR S+  + G D
Sbjct: 126 VECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSD 180

[Close]

BLAST of Sed0010872 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-10
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 143 DCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCS-IVNEKGLDL 198
           DC ICL DFE GE  ++ P C H+FH  C+  WL   +TCP+CR + + ++K L +
Sbjct: 139 DCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGM 194

[Close]

BLAST of Sed0010872 vs. ExPASy Swiss-Prot
Match: Q86XS8 (E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens OX=9606 GN=RNF130 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-10
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 119 KERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKK 178
           K+ I + T  TV  G  E       CA+C+E ++  ++ +I P CKH+FH SC+  WL +
Sbjct: 239 KKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILP-CKHVFHKSCVDPWLSE 298

Query: 179 SLTCPICRCSIVNEKGL 196
             TCP+C+ +I+   G+
Sbjct: 299 HCTCPMCKLNILKALGI 314

[Close]

BLAST of Sed0010872 vs. ExPASy TrEMBL
Match: A0A0A0L6M6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.0e-61
Identity = 133/197 (67.51%), Postives = 153/197 (77.66%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLT 60
           MIPQALTVPQSNPPPSILPFLTAFSIVI+IFI+IIIFSV+AS +IIV IYV C+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGPDPNLEAGARNENPITQT---MILGSHQMRDGGN--VEQSESNVWSEALEITMAER 120
           +LDG   NLEAG  NEN +  T   ++L  HQ    G   +E+SESN W E +E T+   
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI--- 120

Query: 121 KRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLW 180
                 ++E+ A  VSYGSSEAA KCIDCAICLEDFENGELCQ FP+C HIFHYSCIQ W
Sbjct: 121 ------MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHW 180

Query: 181 LKKSLTCPICRCSIVNE 193
           LKK++TCPICRCSIVN+
Sbjct: 181 LKKNMTCPICRCSIVND 188

[Close]

BLAST of Sed0010872 vs. ExPASy TrEMBL
Match: A0A5A7UZF7 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005240 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.9e-60
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLT 60
           MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--VEQSESNVWSEALEITMAER 120
           +LD    +LEAG  NEN        ++L  HQ    G   +E+SESN W E +E T+   
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI--- 120

Query: 121 KRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLW 180
                 ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FP+C HIFHYSCIQ W
Sbjct: 121 ------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHW 180

Query: 181 LKKSLTCPICRCSIVNEK 194
           LKK++TCPICRCSIVN+K
Sbjct: 181 LKKNMTCPICRCSIVNDK 189

[Close]

BLAST of Sed0010872 vs. ExPASy TrEMBL
Match: E5GBS2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 105/167 (62.87%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLT 60
           MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--VEQSESNVWSEALEITMAER 120
           +LD    +LEAG  NEN        ++L  HQ    G   +E+SESN W E +E T+   
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI--- 120

Query: 121 KRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPL 163
                 ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FPL
Sbjct: 121 ------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of Sed0010872 vs. ExPASy TrEMBL
Match: A0A5D3BTV2 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00260 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 104/167 (62.28%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLT 60
           MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--VEQSESNVWSEALEITMAER 120
           +LD    +LEAG  NEN        ++L  HQ    G   +E+SESN W E +E T+   
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI--- 120

Query: 121 KRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPL 163
                 ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FP+
Sbjct: 121 ------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPV 158

[Close]

BLAST of Sed0010872 vs. ExPASy TrEMBL
Match: A0A7N2L6L4 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-22
Identity = 74/200 (37.00%), Postives = 105/200 (52.50%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPP--SILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIG 60
           M+PQA   P   PPP   IL F+    I IL ++ II+ SV+  + I++ I   C  L  
Sbjct: 4   MVPQAFVPPHPMPPPLHPILSFIAIVCIAILFYVVIIVVSVVVPLFILLVIADICD-LFC 63

Query: 61  LTNLDGPDPNLEAGAR-----NENPITQTMILGSHQMRDGGNVEQSESNVWSE---ALEI 120
           + + + P  +LE G R      + P +   IL                 +W+     +E 
Sbjct: 64  MPSNESPVRDLEEGERIAHQPEDIPYSSCFIL--------------NIRIWASLKMLIEA 123

Query: 121 TMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYS 180
            +   KR K++ LE+    V+YGS E A+ C  C ICLEDF+NG+ CQ+FP C H+FH +
Sbjct: 124 VIEVSKREKQQALEKLPPLVNYGSKEIASTCTVCVICLEDFKNGQSCQVFPSCNHVFHSN 183

Query: 181 CIQLWLKKSLTCPICRCSIV 191
           CI  WLKKS TCPICR  ++
Sbjct: 184 CIGYWLKKSPTCPICRVPVM 188

[Close]

BLAST of Sed0010872 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-13
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 105 SEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCK 164
           S A   T+A+R  LK+R L++  +   YGS E      +CAICL +F +GE  ++ P C 
Sbjct: 67  SSAAAGTVADRAGLKKRELKKFPV-AEYGSGEVKIAATECAICLGEFADGERVRVLPPCN 126

Query: 165 HIFHYSCIQLWLKKSLTCPICRCSIV 191
           H FH SCI  WL    +CP CR S++
Sbjct: 127 HSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of Sed0010872 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 137 AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL 196
           +AA C DCA+CL +FE G+  +  PLC H FH  CI  WL+    CP+CR +I+   G+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGV 207

[Close]

BLAST of Sed0010872 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 137 AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL 196
           +AA C DCA+CL +FE G+  +  PLC H FH  CI  WL+    CP+CR +I+   G+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSAGV 207

[Close]

BLAST of Sed0010872 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.6e-12
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 142 IDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLD 197
           ++CAICL +FE+ E  ++ P C H FH SCI +WL    TCP+CR S+  + G D
Sbjct: 126 VECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSD 180

[Close]

BLAST of Sed0010872 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-11
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 143 DCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCS-IVNEKGLDL 198
           DC ICL DFE GE  ++ P C H+FH  C+  WL   +TCP+CR + + ++K L +
Sbjct: 139 DCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGM 194

The following BLAST results are available for this feature:

BLAST of Sed0010872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060638.1	8.0e-60	65.66	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]
KAG6600727.1	5.9e-55	64.58	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7027690.1	8.8e-51	62.43	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6577373.1	2.6e-50	63.59	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_011652743.1	8.9e-43	44.77	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]

BLAST of Sed0010872 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	1.1e-11	41.86	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q67YI6	4.2e-11	45.76	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q9C7I1	1.2e-10	47.27	RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1	[more]
Q9SJJ7	3.5e-10	44.64	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q86XS8	3.5e-10	36.36	E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens OX=9606 GN=RNF130 PE=1 SV=1	[more]

BLAST of Sed0010872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6M6	6.0e-61	67.51	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 P...	[more]
A0A5A7UZF7	3.9e-60	65.66	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
E5GBS2	1.1e-41	62.87	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3BTV2	2.4e-41	62.28	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A7N2L6L4	5.4e-22	37.00	RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Sed0010872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	7.8e-13	41.86	RING/U-box superfamily protein	[more]
AT3G18930.1	3.0e-12	45.76	RING/U-box superfamily protein	[more]
AT3G18930.2	3.0e-12	45.76	RING/U-box superfamily protein	[more]
AT1G35330.1	8.6e-12	47.27	RING/U-box superfamily protein	[more]
AT2G27940.1	2.5e-11	44.64	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 144..185 e-value: 1.1E-6 score: 38.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 143..186 e-value: 1.1E-12 score: 48.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 144..186 score: 12.592549
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 104..191 e-value: 9.3E-19 score: 68.9
None	No IPR available	PANTHER	PTHR45798:SF72	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	coord: 14..190
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 14..190
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 143..186 e-value: 1.62137E-16 score: 68.0973
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 143..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010872.1	Sed0010872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane