Sed0010782 (gene) Chayote v1

Overview


Name	Sed0010782
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 40030553 .. 40031304 (-)
RNA-Seq Expression	Sed0010782
Synteny	Sed0010782

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCCTAAAAGAATGAAATGTATCACAAGAGAAAAAAGAAGGTTATATAAAAGAATATAATATTATAATTATTGAGTAAAGGAAAGGGGTAGCGGTGTAAATGATGAGTTTAAAAAGGGTAAAAGAGATGATTGATAAGATTTTAATTTACCCATTTATCCCCTCCCCCAAACAAAACAAAACACTAACATTTTAGGCTTACCCTCTCAGAGAATCTCTGCTGCTGCACTGAGAGAGAAAAAGAGAAGAAAGAATTTTCCATTACCATTCAAGCTTCCAAGTTCATCCATGGAGATCTCAACCACGGTGGCGAAGTTCAAAATGCACATGATCGCAGCCCTAACCCTAAGCCTAACTCTCTTCTCCCTCACCCTCATCGGTCCCAGATTCCTGTCTCTCCTCGCCTACTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCTCTCCCCCCGCCGGAAAAAGCCGCCGAAGGCCTCCTCAACTACGTCGCCGGCCACCACGACCACCACCACCACTCCGATTAGACCACGGTTCTTTCTCTTTACTTCTCACTTCCTTCTTCGTTCCATCCATATTATTTATGTACTCAATAACGCTTATCTAATGAAATCTCTCTTTCTCCGCGCCCATCTGACCCAGGATGCCTCTGCTCGTCTATTTCTCTTCAAATCGATTACTCGTAGTGTTTTTACATCGGATTTCATCCAAATTTGGTTTAAAT

mRNA sequence

GTGCCTAAAAGAATGAAATGTATCACAAGAGAAAAAAGAAGGTTATATAAAAGAATATAATATTATAATTATTGAGTAAAGGAAAGGGGTAGCGGTGTAAATGATGAGTTTAAAAAGGGTAAAAGAGATGATTGATAAGATTTTAATTTACCCATTTATCCCCTCCCCCAAACAAAACAAAACACTAACATTTTAGGCTTACCCTCTCAGAGAATCTCTGCTGCTGCACTGAGAGAGAAAAAGAGAAGAAAGAATTTTCCATTACCATTCAAGCTTCCAAGTTCATCCATGGAGATCTCAACCACGGTGGCGAAGTTCAAAATGCACATGATCGCAGCCCTAACCCTAAGCCTAACTCTCTTCTCCCTCACCCTCATCGGTCCCAGATTCCTGTCTCTCCTCGCCTACTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCTCTCCCCCCGCCGGAAAAAGCCGCCGAAGGCCTCCTCAACTACGTCGCCGGCCACCACGACCACCACCACCACTCCGATTAGACCACGGTTCTTTCTCTTTACTTCTCACTTCCTTCTTCGTTCCATCCATATTATTTATGTACTCAATAACGCTTATCTAATGAAATCTCTCTTTCTCCGCGCCCATCTGACCCAGGATGCCTCTGCTCGTCTATTTCTCTTCAAATCGATTACTCGTAGTGTTTTTACATCGGATTTCATCCAAATTTGGTTTAAAT

Coding sequence (CDS)

ATGGAGATCTCAACCACGGTGGCGAAGTTCAAAATGCACATGATCGCAGCCCTAACCCTAAGCCTAACTCTCTTCTCCCTCACCCTCATCGGTCCCAGATTCCTGTCTCTCCTCGCCTACTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCTCTCCCCCCGCCGGAAAAAGCCGCCGAAGGCCTCCTCAACTACGTCGCCGGCCACCACGACCACCACCACCACTCCGATTAG

Protein sequence

MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFANTSLPPPEKAAEGLLNYVAGHHDHHHHSD

Homology

[Close]

BLAST of Sed0010782 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 5.4e-24
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI   VAKF+ H++AAL LSL LFSL L+ P+FLSLLA+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHDHHHHSD 89
          TSLP P+KAAEGLLNYVAGH DHH  +D
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDAD 88

[Close]

BLAST of Sed0010782 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI + V KF+ H++  L LSLTLFSL L+ P FLSLLAYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHD 83
          TSLP P+KAAEGLL+YVAGHHD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHD 82

[Close]

BLAST of Sed0010782 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI + V KF+ H +AALTL LTLFSL L+ PR LSL+AYFWPLLLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHD 83
           SLPPP+K  EGLLNYVAGH D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD 82

[Close]

BLAST of Sed0010782 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI + V +F+ H +AALTL LTLFSL L+ PR LSL+AYFWPLLLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHD 83
           SLPPP+K  EGLLNYVAGH D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD 82

[Close]

BLAST of Sed0010782 vs. NCBI nr
Match: PON94035.1 (hypothetical protein TorRG33x02_100740 [Trema orientale])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI   + +FK H++ AL L + + +L L+ PRF+++LAYFWPLLLSTALFL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PEKAAEGLLNYVAG--------HHDHHHH 87
          TS PP  +KA EGLL+YVAG        HHDHHHH
Sbjct: 61 TSPPPAADKAGEGLLDYVAGQPDDHHHHHHDHHHH 95

[Close]

BLAST of Sed0010782 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.8e-23
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI + V KF+ H++  L LSLTLFSL L+ P FLSLLAYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHD 83
          TSLP P+KAAEGLL+YVAGHHD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHD 82

[Close]

BLAST of Sed0010782 vs. ExPASy TrEMBL
Match: A0A2P5F8A8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100740 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI   + +FK H++ AL L + + +L L+ PRF+++LAYFWPLLLSTALFL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PEKAAEGLLNYVAG--------HHDHHHH 87
          TS PP  +KA EGLL+YVAG        HHDHHHH
Sbjct: 61 TSPPPAADKAGEGLLDYVAGQPDDHHHHHHDHHHH 95

[Close]

BLAST of Sed0010782 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.8e-16
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI   + KFK H + AL L LTL+++TLI PRFL++LAYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHDH 84
          T+LP  E + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of Sed0010782 vs. ExPASy TrEMBL
Match: A0A314XNV4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25186 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.8e-16
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI   + KFK H + AL L LTL+++TLI PRFL++LAYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHDH 84
          T+LP  E + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEPSGEGLLDYVAGQPEH 83

[Close]

BLAST of Sed0010782 vs. ExPASy TrEMBL
Match: A0A5E4FSR9 (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.8e-16
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          MEI   + KFK H + AL L LTL+++TLI PRFL++LAYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPEKAAEGLLNYVAGHHDH 84
          T+LP  E + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of Sed0010782 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-10
Identity = 43/96 (44.79%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1  MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
          ME    + KFK+ ++ A  LSL   +L    P FL++L+YFWPL LSTALFL AV  FA 
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 TSLPPPEK------------AAEGLLNYVAG--HHD 83
          TS  P               AAEG+L+YV G  H D
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHED 96

[Close]

BLAST of Sed0010782 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 1   MEISTTVAKFKMHMIAALTLSLTLFSLTLIGPRFLSLLAYFWPLLLSTALFLLAVLLFAN 60
           MEI   + +++ H +  + +S+ + SL    PR L++LAYFWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPPPEKAAEGLLNYVAGHHDHHHHSD 89
                 E   E L++YVAG  +  H ++
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSHKNN 209

The following BLAST results are available for this feature:

BLAST of Sed0010782 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577526.1	5.4e-24	76.14	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56016.1	7.8e-23	76.83	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG7028299.1	1.3e-22	76.83	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596766.1	2.9e-22	75.61	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON94035.1	4.1e-16	56.84	hypothetical protein TorRG33x02_100740 [Trema orientale]	[more]

BLAST of Sed0010782 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	3.8e-23	76.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
A0A2P5F8A8	2.0e-16	56.84	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100740 PE=4 SV...	[more]
M5WI68	5.8e-16	60.24	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
A0A314XNV4	5.8e-16	60.24	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_251...	[more]
A0A5E4FSR9	5.8e-16	60.24	PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1	[more]

BLAST of Sed0010782 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13175.1	3.6e-10	44.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G16400.1	2.2e-07	35.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010782.1	Sed0010782.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane