Sed0010745 (gene) Chayote v1

Overview


Name	Sed0010745
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Trafficking protein particle complex subunit
Location	LG04: 46811883 .. 46813722 (-)
RNA-Seq Expression	Sed0010745
Synteny	Sed0010745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTCTGCGTCGCCGTCGTCGGCCACCAGGTGCGACCTCCATGAACTCGATATTGAAAAGGATTTCATCAATGTTTACTAGAAAAGATTTGTGATCCTTTTTTCCGATTCGGGCCGAGCTAACAGAACAATCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTTTTCACCGTTCTCTGGATGTCGTCGACGAGCGAGGTATGTTTCTTGCTTCTAATTTGATCTAGGAATCGTGGCTGGTTTTGTACTCTGTTAGGGTTTATGATTTGGAGCTGTTTGATCTTGTGATGATTGTTAATTGTTTGTGGTTCTGATACAAGTGAACCATCCGAGAAAATCTGGATCGACATTGAACGAGACCTTTCTAGGTCTTCTTCACCCGACTGAAAATCACAAAGTGTGAGTTTGTGATTGTTTCTATGGATATTACAATGCAATGAGGGATATTTTGATTTTTATAACAAGTAGGATCAGATTGTTTTGATGTCAGTTTCAATTGGAGTGGACCTGTAATGTTGTGTACAATTGAAATCATTTTCAGGTATGCTATTTGACTAATACCAGAGTGAAGGTTCTTATGGTCACCACAGATCTCGATGTCAGAGATGTCGATTTGAGAAATGTAAGTACTGTTGTTTGGTTTGCAATTTTCTAAATTTTCTCCTCGTAATTTTTTATTTTTCGTGATTGTCTGAGCCAACTTGCGTACACCTCACTAATGTCATAGGACATAGTACCTGACCTTATAATAATTGGATTCAAGGAAATTAATTCGTACATAAATGATCACCATAGATTAAACGCGTTACCTCTTAGTTCTTCGAGACCCTCTTGACCATGAGAATCAAAGATATTGTAGGAGAGATATTGACCATGAGAAAGCTTTCATTAGGAGAGATATTGACCGATCAAAAGCTTAGGTGGTTCATGAATTTGAGAAGTCCCGAGTTTGATAGTTTGGGTTAGGAAGCCCTTTGTGTAGCCTTTGTTTGCACGAAGTTCAAGAAATTTGAGCTTTTCAATGGCATTTGTTGGATTTGTTCTGTGGTTTTATATAAGTCTGCATAGTGTATGGAATTTGTAAACTTGTAGTTTGCATAAACTCGCATATCATATCATAGGTAGGTTCAAGTTCTCACTCCAAGTCAATACAAATTCCAGAAATTGTTATTCCACTTTGTTGTCGCAATAGATTCGCACTGTCAGTCTCATGGTTTATATTGCAAACCATTTCATTTCTGAAAAAGCATTGTAAATTTGCCTTCTTAATATGGCATTCTTATAGGTGTTGTTCGAATTTTCGTGCAGTTTTTTCGGAGATTCCATGGTGCATATGTGAATGCAGTTTCAAACCCATTCCACTTTGTTGTCGCAATAGATTCGCACTGTCAGTCTCATGGTTTATATTGCAAACCATTTCATTTCTGAAAAAGCATTGTAAATTTACCTTCTTAATATGGCATTCTTATAGGTGTTGTTCGAATTTTCGTGCAGTTTTTTCGGAGATTTCATGGTGCATATGTGAATGCAGTTTCAAACCTATTTCATGTGCCGGGTAAGAAAATTACTTCAAAAACTTTTGAAGAAAGTGTGAGCACCATTGTCAAGTCGTTTGGGTTCAGTTCAGCTATTTGACTGACCAACCAGGAAACTAGTTCAACCGAACTGAAAACTTTACTGTTGTGTTACTGTCTCTTCTTTCTTGTTTTTTTGGTAGCATTTGAATGATTTTTTCCTCGAGTTGTATTAAATCTAAGCAAACGGTTGTTGTCTTTTTTTTTTTTTAATAATTAAATAAAAAGCAGTTCTACT

mRNA sequence

ATGATGGTCTGCGTCGCCGTCGTCGGCCACCAGAACAATCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTTTTCACCGTTCTCTGGATGTCGTCGACGAGCGAGTGAACCATCCGAGAAAATCTGGATCGACATTGAACGAGACCTTTCTAGGTCTTCTTCACCCGACTGAAAATCACAAAGTATGCTATTTGACTAATACCAGAGTGAAGGTTCTTATGGTCACCACAGATCTCGATGTCAGAGATGTCGATTTGAGAAATTTTTTTCGGAGATTTCATGGTGCATATGTGAATGCAGTTTCAAACCTATTTCATGTGCCGGGTAAGAAAATTACTTCAAAAACTTTTGAAGAAAGTGTGAGCACCATTGTCAAGTCGTTTGGGTTCAGTTCAGCTATTTGACTGACCAACCAGGAAACTAGTTCAACCGAACTGAAAACTTTACTGTTGTGTTACTGTCTCTTCTTTCTTGTTTTTTTGGTAGCATTTGAATGATTTTTTCCTCGAGTTGTATTAAATCTAAGCAAACGGTTGTTGTCTTTTTTTTTTTTTAATAATTAAATAAAAAGCAGTTCTACT

Coding sequence (CDS)

ATGATGGTCTGCGTCGCCGTCGTCGGCCACCAGAACAATCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTTTTCACCGTTCTCTGGATGTCGTCGACGAGCGAGTGAACCATCCGAGAAAATCTGGATCGACATTGAACGAGACCTTTCTAGGTCTTCTTCACCCGACTGAAAATCACAAAGTATGCTATTTGACTAATACCAGAGTGAAGGTTCTTATGGTCACCACAGATCTCGATGTCAGAGATGTCGATTTGAGAAATTTTTTTCGGAGATTTCATGGTGCATATGTGAATGCAGTTTCAAACCTATTTCATGTGCCGGGTAAGAAAATTACTTCAAAAACTTTTGAAGAAAGTGTGAGCACCATTGTCAAGTCGTTTGGGTTCAGTTCAGCTATTTGA

Protein sequence

MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVCYLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

Homology

[Close]

BLAST of Sed0010745 vs. NCBI nr
Match: XP_022928280.1 (trafficking protein particle complex subunit 2-like protein [Cucurbita moschata] >XP_022989273.1 trafficking protein particle complex subunit 2-like protein [Cucurbita maxima] >XP_023529813.1 trafficking protein particle complex subunit 2-like protein [Cucurbita pepo subsp. pepo] >KAG7015283.1 Trafficking protein particle complex subunit 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-62
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of Sed0010745 vs. NCBI nr
Match: KAG6589019.1 (Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-62
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 603 MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 662

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFRRFH AYV+AVSN FHVPGKK
Sbjct: 663 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 722

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 723 ITSKTFAESVSTIVKSFGFSSAI 745

[Close]

BLAST of Sed0010745 vs. NCBI nr
Match: XP_004144858.1 (trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >XP_008447943.1 PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis melo] >XP_038887443.1 trafficking protein particle complex subunit 2-like protein [Benincasa hispida] >KGN43262.1 hypothetical protein Csa_020365 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+R+FFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of Sed0010745 vs. NCBI nr
Match: XP_022136317.1 (trafficking protein particle complex subunit 2-like protein [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 4.4e-60
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDV++ERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK ++VTTDLDVRD D+R+FFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]

BLAST of Sed0010745 vs. NCBI nr
Match: XP_031127945.1 (trafficking protein particle complex subunit 2-like protein [Ipomoea triloba])

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-59
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+P+KSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK ++VTTDLDVRD D+RNFFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSA 142
           ITS+TF ESVSTIVKSFG SSA
Sbjct: 121 ITSRTFAESVSTIVKSFGLSSA 142

[Close]

BLAST of Sed0010745 vs. ExPASy Swiss-Prot
Match: Q54CU7 (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum OX=44689 GN=trappc2l PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-25
Identity = 60/139 (43.17%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 2   MVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETF 61
           +VCVA+VG  NNPL+IQ F+ +   ++ LKLH+I H SLD+++++    +K  S   + +
Sbjct: 4   IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLPS---DMY 63

Query: 62  LGLLHPTENHKVC-YLTNTRVKVLMVTTDL-DVRDVDLRNFFRRFHGAYVNAVSNLFHVP 121
           LGLL+PTE++KV  YLTNT++K ++V  D  D++D DL+ FF+R    ++N  SN F+ P
Sbjct: 64  LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 123

Query: 122 GKKITSKTFEESVSTIVKS 136
             K+ SK F + V+ +V S
Sbjct: 124 NSKVESKKFLQEVTNLVPS 139

[Close]

BLAST of Sed0010745 vs. ExPASy Swiss-Prot
Match: Q5M8X5 (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=trappc2l PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.3e-24
Identity = 57/136 (41.91%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M VCVAV+  +N PLYI+S T  ++ LK H+  H SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPG 120
           LL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ FR+ H +Y + + N F+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 134
             I S+ F+ +V++++
Sbjct: 121 DPIQSRAFDNTVTSMM 135

[Close]

BLAST of Sed0010745 vs. ExPASy Swiss-Prot
Match: B2RYU6 (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus OX=10116 GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 56/136 (41.18%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M VC+AV+  +N PLYI+S T  ++ LK H++ H SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPG 120
           LL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ FR+ H +Y + + N F+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 134
            +I S+ F+  V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]

BLAST of Sed0010745 vs. ExPASy Swiss-Prot
Match: Q9JME7 (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=10090 GN=Trappc2l PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 56/136 (41.18%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M VC+AV+  +N PLYI+S T  +  LK H++ H SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPG 120
           LL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ FR+ H +Y + + N F+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 134
            +I S+ F+  V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]

BLAST of Sed0010745 vs. ExPASy Swiss-Prot
Match: A6H7F7 (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=9913 GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-23
Identity = 56/136 (41.18%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M VCVAV+  +N PLYI+S    ++ LK H++ H SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRSI-PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPG 120
           LL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ FR+ H +Y + + N F+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 134
            +I S+ F+  V++++
Sbjct: 121 DRIQSRAFDGMVTSMM 135

[Close]

BLAST of Sed0010745 vs. ExPASy TrEMBL
Match: A0A6J1JPT4 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111486394 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of Sed0010745 vs. ExPASy TrEMBL
Match: A0A6J1ERA2 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111435157 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of Sed0010745 vs. ExPASy TrEMBL
Match: A0A0A0K4Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+R+FFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of Sed0010745 vs. ExPASy TrEMBL
Match: A0A1S3BJH9 (trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3656 GN=LOC103490277 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+R+FFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of Sed0010745 vs. ExPASy TrEMBL
Match: A0A6J1C584 (trafficking protein particle complex subunit 2-like protein OS=Momordica charantia OX=3673 GN=LOC111008034 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.1e-60
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDV++ERVN+PRKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PTEN+KV  YLTNT+VK ++VTTDLDVRD D+R+FFRRFH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 143
           ITSKTF ESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]

BLAST of Sed0010745 vs. TAIR 10
Match: AT2G20930.1 (SNARE-like superfamily protein )

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-57
Identity = 105/140 (75.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLG 60
           M+VCVAVVGHQNNPLYIQSFT+ADDALKLHHI H SLDV++ERVN+P+KSG+TLNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVSNLFHVPGKK 120
           LL+PT N+KV  YLTNT+VK ++VTTDLDVRD D+R+FFR+FH AYV+AVSN FHVPGKK
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFS 140
           ITS+TF ++VS IV S+G +
Sbjct: 121 ITSRTFAQTVSNIVGSYGLN 140

The following BLAST results are available for this feature:

BLAST of Sed0010745 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928280.1	8.0e-62	87.41	trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]...	[more]
KAG6589019.1	8.0e-62	87.41	Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp....	[more]
XP_004144858.1	3.0e-61	86.71	trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >X...	[more]
XP_022136317.1	4.4e-60	83.92	trafficking protein particle complex subunit 2-like protein [Momordica charantia...	[more]
XP_031127945.1	1.3e-59	84.51	trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]	[more]

BLAST of Sed0010745 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54CU7	4.8e-25	43.17	Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium dis...	[more]
Q5M8X5	5.3e-24	41.91	Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicali...	[more]
B2RYU6	1.2e-23	41.18	Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus...	[more]
Q9JME7	1.5e-23	41.18	Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=1...	[more]
A6H7F7	4.5e-23	41.18	Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=991...	[more]

BLAST of Sed0010745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPT4	3.9e-62	87.41	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1ERA2	3.9e-62	87.41	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0K4Q0	1.5e-61	86.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1	[more]
A0A1S3BJH9	1.5e-61	86.71	trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3...	[more]
A0A6J1C584	2.1e-60	83.92	trafficking protein particle complex subunit 2-like protein OS=Momordica charant...	[more]

BLAST of Sed0010745 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20930.1	4.9e-57	75.00	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006722	Trafficking protein particle complex subunit 2	PFAM	PF04628	Sedlin_N	coord: 7..134 e-value: 2.6E-25 score: 89.1
IPR006722	Trafficking protein particle complex subunit 2	PANTHER	PTHR12403	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2	coord: 1..137
None	No IPR available	GENE3D	3.30.450.70		coord: 1..137 e-value: 2.4E-33 score: 117.2
None	No IPR available	PANTHER	PTHR12403:SF26	BNAA06G40850D PROTEIN	coord: 1..137
IPR044760	Trafficking protein particle complex subunit 2-like	CDD	cd14854	TRAPPC2L	coord: 3..133 e-value: 2.90255E-56 score: 170.078
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 3..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010745.1	Sed0010745.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030008	TRAPP complex