Sed0010727 (gene) Chayote v1

Overview


Name	Sed0010727
Type	gene
Organism	Sechium edule (Chayote v1)
Description	KH domain-containing protein
Location	LG03: 20695466 .. 20705491 (+)
RNA-Seq Expression	Sed0010727
Synteny	Sed0010727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACAATCATAGATTTTCCTCATTTCAGGCATTCACCCTTTTGCTCCTAATCTCCGCCTCCACCTCCGCCTCACTCGTCGGAGCCGTCCTTATCCACCGTCTTCTCCGGCGGAATCGCCGCCTCAACCCACCGAAATCCCCTCTTTCACTTTCCCAATCCCCCAATTCTCTGAGCTTCCAATTCAATAAACACGAAGCTATGTCGGGTATGTACAGCACCAATTTTTCCCCCGCAAGAACTGCTTCTCCTCACATCAGAGCCACTCCCGATGTCGACAGGTACTGATATCATACATCTGGGAATTTCTCGTTTCTTATTCTTTTCGTTTAGTTTTGACGATTTTTGAGTTTGCTTAGCTTGATTGAGTTGATTTATTGTTGAATAATCAATCATTCTTTGATTCTTTGTACTTTAATATCTAGTCAGTACCTGTCGGAGCTACTAGCGGAGCATCAGAAGTTTGGCCCCTTCATGCAAGTTCTTCCGATCTGCAGCCGACTTTTGAATCAAGGTTTGTTCTTCTCTAAATTTTTGGTGTTTTTAATATTCTTGATGTTATGAAATAATCGTACAACAACCAAGAATTGAATAACGCCTCACGAACAGCATACTGATTTACATGGTTTACCACCGATTTGTTTGCAGACAGTGAAAGATCCTGAAAAATACAAAATGTTAGTATTAAATGTTAGATAGAGAGAGCATAGAGGTTTTACGAGAGTTTATATAGTGCATCGGTCATAAAACCCTATTGCACCATTTGGATCAAATAACATAAAAACTCAATATCTGGTGGATTGGAGCTGCTTAACAACAATTGCTCTCTTTGCGGGTGTTTTGACTGTTGAATTGTGCATATGTCAATGATCGATCTTTTTTTTCTTCACATTGTCAACTCGAGTTTTAAAGGGATTGTGCTCTTGGTGGATTTGATCAATGATTCATCCTCCTTATTGATTAATTTAATTCATCCTCCATTTTAAGTTCTTTTTTTAAAAAACTATTCTTGTTCTCTGTAGTTAATGCCCAAATAGATTTCTGTATCTTCCTTTTTAAATTTAAGCTTTTTTATTCTGTCAGTAACTTCTCATTGCAAGATCTTTAAATGCAGAGATATTGAGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGTGACCTTGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCGAACCTTATATCTAATGTTAGTAGTACAGGTTTCAGTGGCTGGAATGGTCTTCCTCAGGAGGTAATTACTATTTTAGTGTTATAAAATTGGAATTTACGCTTTTAGCTTTATCAATGAAAATGTTTTCATTTCTTATAAATAGAATAGGAATTTACACTTTCACCTTTATCAATGAAAATGTTTTCCTTTCTTATAAGGAAATAGCAATTTAGTCCCCAAGGGGTGTGATATGATCTACCACACTTTTCTATTAAAATAAGATAAATCTCCCGAGAGGATCTCTCTAAGAACCAGAGTCCAAAATACGACAATTCAATGGATGATTAATAAAGACCTAATCTCTCCTATTTATAATGACTCTAAACCCTAGCCTTTCTACTTGTTCTCCAAGTAAACCCTTAATTAAATAATAATCTCTAATAAGGCCCAAAAGCCCAATACAATTGAAATAACAATTAATTAATCAATAATAAATACTAATACTACTATTCCTAAAACTCCAAGGTAGGTCCGGATCGTATCAATACTTTCCCCCCAAAGAGCCACCTTGTCCTCAAGGTGTTCCATCTCCGATGCCACCTTCTGCAGCTCCATCTTCTGGCAAAAAATCAGTCACCTCAACATCCTGGTAATCGTGCACATCCCGAACGACCCACACATCCAAGTTCTGAAGTTCTTTCTTCTTACAACGATGTCCTGGGACAAATTGTTCATCGCAGCGGAAACATAACCCTTTGTCCTTCCTAGCTCGAATTTCGGCTTCAGTGAGTTTTTTACAAGACGTCGGGTGAACGGTTGTAGTCCTGTGGGACAAAATCTCTGTGCTTCCCGTTCTTGATCCAATCGTTCCTACTTTAGCCTTAACTGTTGCAGAAGTACTTCCCTCGTTTTGGGTAGCCTGAAAAGCAAAATCATCCTCAATCACTTGGGCCATAAACATTTTCTCTTCAATGCCCACTGGTCGTAGTTTACCCATCGCGCTCCGTATCTCCTCTTTCAGTCCACTTTCCCACTTCCCCTCCAATGCACTCATACTGATATCACGCATTCCCTTAGCAAAGCGCTCAAAGCTCCGACGATATTCCTTCACCGTTCCTATTTGCTTCAAACTCATGAAGTTGGCATACTTATTGGCTTGGGCCACTGGTTGGAAACGCTCCAACAACCCATCTTTGAATTCGTTCCACGAACGAAAAGGAGCACGGTCCTCCTCATACTGAAGCCACTCCAATGCCTCCCCTTCCAAACATAACCCTGCTGCCTCAACCCCTTCATATTCAGTCAACTTGTTTACCAGGAAATAACGCTCAACCCGACTCAACCATCCTACCGGATCCTCATCAACAAGACCCTTGAAAATCGGCATCTCCAATTTTCTAAATCTCCTATCACATCCCGGTCCCTCCCTTTCTAATGCTCTCTGTCCTCCCCGTTCAAATCTTTCTTCTCCCCTCCGCTCAAATTCCCGTCTCGTATTTCGAAAACTGTCACCCCAACCACGATCGTTCCAACCATCATGTGCTAGCGGCCTTTCATAACCGATGCGCACCCTCCTCTCTTCTAACAACCCATCGCCTCCCCAACCACCTCGGAGAACTCCTCGTCGATCACCATCTGGACCGATGCCCCTATTTCCGTCAGAATTCCCCTGAATATCCGTCCTTCGGTCCAACCTGACTGGCCCAGGCCGACCCGGCCCGACCAGCCCGCCCCGACCTGGTCCTCCCGGGCCGCCGCCCGGCCCCGCGCTTGACCCGAGCCCACCGCCCCGGCCTTGCTCGGCCCTGACTCCGCACACCCCCATGCTCGCGCCCCAGCCTGAGGCCTCAGCGCCGCCTATGCCCGGGCCCCAACCCGAGTCTGGTCCCCCCTGGCCGCCACCGTGCCACACGCCTCCCGATCCCGCGCCTGGCCCCAGCCCACAACCTCGACCCCGCTCGCCCCCGGCTCCGCACACCCCCACGCCAGCACCCCAGTCCACGGCCTCAGCGCCGCCTACGGTCGAGCCCCACCCCGAGCCCCAGCTTGCGCACCAGCCCCTCCGTGTGTCGGGTTCTCCCCCGCCGACCCCGCTCGAACCCCAGCCCGCGCGACCACCCGCCGCACCAGCCCCTCCGTCTGCGCCGCCCGCACCGACCCCGCCGGTAGCCCCTCTCGGACAGACCCTGCCGTCCGCCCTGCTCGCGTCGCCCATGCTGGTCGCCATGCCGATGCCACAGCCCGCAGCCCCGACATCACCACTCGCCCCCATTGCTCCCGCGCCGCTCGCGCTGTGCAGCCACTCCGAGCCCGCGTGCGCGCCCCCCGTACTCGCGTCGGCCCACCCTGGCGCGACCTCCGTCGCACCCTGCTTCGCCACGCCGACCGCCGCCGCCCCTGCATCGCCCGAGCTAGCCCCAGCCGCACCGCTCGATCCTTCCCCCGCAGCCTCGGGCATCGAGCCCTTCCCCTTGTCTGCTCAGATTGTCTCCACTAAAAGTTCCAGATTTCGGTTCATCGTCTCGAGCTTCGAATCCTGCAAATCCAGCCTTTTCCCTAACCTTTCTTCCATCGCTTCCATCCTCGCGTTAGTCTCCTGTAACTTCTTGGCCAAGTCGGCCGTTCCCTCTTCACACTCTTGCAACCTGGATTCCATCTTAGTAGTAACCATTCCCGGATCGGCAAATGGCTCTGATACCAAAATGATATGATCTACCACACTTTTCTATTAAAATAAGATAAATCTCCCGAGAGGATCTCTCTAAGAGCCAGAGTCCAAAATACGACAATTCAATGGATGATTAATAAAGACCTAACCTCTCCTATTTATAATGACTCTAAACCCTAGCCTTTCTATTTGTTCTCCAAGTAAACCCCTAATTAAATAATAATCTCTAATAAGGCCCAAAAGCCCAATACAATTGAAATAACAATTAATTAATCAATAATAAATACTAATACTACTATTCCTAAAACTCCAAGGTAGGTCCGGATCGTATCAGGGTGGTGTAGTGGTTGAAGACTTGGGTTTTGAGGGTATGCTCCCCTCAAGGTCCCGGTTCGAGACTCACCTGTGCCATTACTCCTTTGATGTCTTCGGTGCCTGGCCTAGGGACGGACGTGGTTAACCTTGTTTCAAAAAAATAAAAGGAAATAACAATTTACTATGTTAGTTTTAGCATAAAAACTTCATTGGTACCTGGCTCCCGATCCTTGTTGATCTCATCATTTTGAGTTCAATTTTACTTTGTTTTAATTTTGATATTTGGGCTAAATGCTAATATATGCCATAATTATAACTTGATAGTTTAAAGGTAACCTTTTGATTCCCCTTCTGAAATAGGCTCATAGCTTGAGAAATTGAGGTGTAATAAACGTTGCAGTGTGCCATTATCTACAGCTAATTACAAAAGCTTGTTTGGTCCTTTTTTTTAATATAAATTTTAGGAAAACAAGCTTGTTTGCAATAGATGGCGAACTTTGTCTGTATTTGTTTCTTTACTTTTTGAGAGGGAAACATAGTTTTTCTTGAAGAATTAACAACTTTATTGATCATATGAAATAAGCGGCTCCGAAAAAAATGGTTGTTACAATAACGATTTACATTTGGAAATAATAAAGATGAACTATAAGAAGAATGAAGGTCCTTATCTTCACACAAAAATACATCGTGATAGAATCAATTCTAGAACTTGGCCAAAAGATGAAGATACATCATTGAAGCCACTGTTAAAAATGATTTATAAGTCATTTAGGCGCTTAGAAGTCATTTTGGCACTTAGAACTAGGCTTCGATGAAATTTAAATGATTTATAAAATTGATTGAATGGAGCAATCTAGCATGTTTACTACATCTGATTCAACTTCAAAATTTCCAGGTTTGTGGTCTTGGTCTATTGATTCTTCCAAGAAGTTTATGGTCAAAATTCTCATTGATGGCTTAGTGGGGGTGGCGGATCCTGTTTTAAAAATTACTTATCTGGTGCTTTTGAAATATTTTTATCCAAAGAAAAAAACTACGGAATTTGAGTCGTGGTGCCATAAATATAGCTGAAAATCGCAAAGGTGAATGCCGTATCTCTTGATTTCCAGTTTGGTTTGTGATGCGCCCGACTGAGGTTGAATGTCAATCTCACCTTTTTCACTATTTCTTTCCTGATCGTTTCTGAAAGATTTATTGGAGGCATTCGATTGGTCTCTTTTGTTTCCAAATGACATTCTAGATTTTCTCATGTGGTTTTGGTGGGTCATCCCTTTCAAGGATTAAAGAAGAAGACATTGTTTTTACTATGTTAGTTTTAGTGGCTCAGGAGTGCTAGTAAGATGGAAAGCCGAGGGAACTTATAATAATAACCCAACTGAGCCACAAGTCAGATAAAAAAGAAGTTGTAGAACCATTACCCAAACACCGATCCACCCGATCATACACTATATGAAGAGAAAGAAACATAGTTATTTCATTAATATATGAAATAGAAGTACCACCAATGGTGGACGACTTAAAGTATTCCAATTATTTTTTTTAAAGGAAAAAAAAAACATTTGCATGGATAAAGTGAAAGCGTTGTATAGAAGTTTATCAAAACAACAATAAAGGGCCCATCAATGAGCAAAATACAAAGGAAAATCAGTAAATACAAGCTTGATAGTGTGAAATACAATGAAACAAGAGGATGAGTGATGGTTGAGCTTGTAGGTCGATGTCGATGTAGCCAAGAAATGCCTTTCTATTTGTTCATGTATTGGAAAAATGATGTTCGTGTGTTGAGAAACGATCGTGTTAGCTATGGCCAAAAGAAGGAGAAAAAACTAAAGTCTGGGGGGATCAAATGAGATAAGGATGTATACCCTATACCCTATACCAATTCGCCGACGAAGACGTTAGACCTTGAATCGAAAAAAGGTTGATGTATCGTAGTTTCGATGGAGGCATGAAGAAACACATCGGAGTGGAGAGGGTGGGAAGATACGGGTTGAGTTCATTGGTTTCCCGCAATAGGTGAAGTATGGATGGTGTGATGTTGCACCGCTTTTGTGAGATGGTTGGAAGAAAGTGGCCTCCTCTGGCGCTGGTGAGAGGTGGCACCAGAGGGGGAGGGAGGGAAAAGTTTCGAACTAGGGTTTCTAGAGAGAAATTAGAGAGAGAGTTTTAGAGAGAGGTAATTAGTAATTACAGAGAATCTATTGGTTCAAGTACTTTAAAAACACCCCTTTTAGTTCCTATACTTTTTTTTAAAACAAAGGTAACAACGTCTGTCCCTAAGCCAGACATCAAAGACATCGAAGGAGTACTGTCACACAGGTGAGTTTCGAATCCGGGACCTTGAGGGGAGCATACCCTCAAAGCCCAAGTCTTCAACCACTGCGCCACCCCTTGGAGACTTTAGTTCCTATACTTTTAAAAAGTGTTCAATATAATCCTTGTCCTTGGTGTGAATTTTCAGTTAATAAGCAAATAGATTGAGGACATTGCATTTTTTATGAGATGAGTAAGTGCATACGGGGGGTTTCATAATAAGCCGGGTCTGAGCATATCCCTAAATATCATGGTTCATAAGGTTTTCTCTGTGGTTTTCCTTGGCGTCCAACAGATGATTTTGGTAGTGTTGAGGACTTTTTGATGCAGTGGGAGAAACGGTTGGATTTGATTGAAGGAGTGGGAGGCATGCAAAGATTGAGAAAAAGTTATGGGAAAATCACGAAAAATACACGGAGAAAAAATGCTCACCACCGTGGCAAGAAGACATGGCAGGGGTTAGCTCTTCGCATTTGCTTCCTAGGAAATAGTTTTACTCATCTCATAAAAATACACATCATCAATCAGTTGGTTTATTAACAGAAGATCAACACCAATGACCATACGAATATTTTTTAAAAAAAATATAGGGACCAACTTGAACAAAAACTGAAAGTACAGCAACCAATCCATATTTTACTACTTTTCACTCGTGTGATGGGTCAAAGTTTTCTTCACCATTCTATAGGATTATGTCTTCCACTGGACCACTGGTTGCCCTTTCCGGTTCTCCCGTTTAAAGTTCAACTGAAAGTGTCATCTATAAAACCGAAGAGCAACCATTTAGATGAAATGCAAGAAATAGAATAAAATTTATTAAGTATTTATCTGTTCAAGTATGTGTAACGATTCTAGATAAACCCAACGTTTCTTGTAAAAGTTGGCCTCTTACTGCAACATTAGTTAATGTAATTATAATAACTCTTCAACTTTAAAGAGAATGAAATAAAAGAACACTTGAAGATTGTTTCAACAATATACAGATTACATTACATCATGAAAATGTATACAGGTTATTTCTTTCATGTTCAATTATTTCCTCTTCATGTGGAATACCTGATTGGTTATTTTATCATTGCATACTGATATTTCCTGTGCTTCCAGTCCTCTTATATGCTCATAATCTTAATTTGTTTTTAAGATGCTTGAAGCTTTTTTATTTATACAGCAGAGATTAAGTAGACCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCACTAACCGTAAAGAGGATTCTACGTTTGGAAATACCCGTGGATACTTACCCCAATGTAAATTCTGTCTAAGTGAAAATTTCATTTTATATGTATAAAAGGGTGAATAGTTAATACTTAGTTTCTGTTCTTTGTGGATGCCAGTTCAATTTTGTAGGGCGGCTTTTGGGACCTCGTGGTAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAACGGGTCGATAAAGGATCCAGACAAGGTATTATAAGTATATTGCAATTTGGATTTTATGTTGTCGTGTATGCAATTGGATAAAAAAAAAAAAAAGATTTTATGTATGTCATTAATTTTTATTCACATGATGGGTCTTTTAAGAGTCAAGGCTGGTGAATAGATACTTTTTCTTCTCTCATTGATTGTTAAGATTCGGTTAGCTTTTTTTTTCTTGAGTTAGTTGGGAGTCAGGGGGTTGAACCCTGACTCTGGTTCACGGAGACACTTGGCTTGGTTGAGCTATTTAATAGTTTCACTTGTTAGAAACATTCTATTTGTTTGTTAGTAGTCTTGGTTATAAATTGTTCTTTTTTTGACATGTGAGGTGAGCTATTTAACAGTTTCACTTGTTACCAACATGCTATTTGTTTGTTAGTAGTCTAGGTTATAAATTGTTCTTTTTTTGACATGTGAGGTGGGGGATTCTAATATCCGACCTCTTAGTCGAGAGTATACACTTAAATACCCATTGGCTTATAAATTGTATTCTTCTTAATTTGTTCGACCTTTGCATTATAAAGGAAGAACAATTACGGGGACGACCTGGCTATGAGCACTTGAATGAACCGCTGCACATCTTGATTGAGGCAGATTTACCAGGCAATATTGTTGATATAAGACTCAGACAAGCACAGGAAATTATTGAAGAACTTCTCAAACCTGTGGTATGTTTACAAACTTGGATACATTTTAGAGGGCTTTTATCACTTTTTTGGTGCTCTAAAGTTCTCTGAAGAGATTTATGAGAGTTTTTTTTTTAAACCAAGTAACTGGTAGGGAATAACTTCATAAAACCAAATATCAAAGTGATTTGTCATCGAGTAATTTTGTTAAAGTACTTTGTAAACTTATTTTTGAAAGCACATCCAAACACACAATATCATATTTGGAAGAGATTTATGAGTGCTTTTTGCACATTTGTAAGGGAAGCACTTGAAAAAAATAATTTGATAACTGAGAATAGGAGTTTTGGTTCACCTACCTAGGAAACTTCGAGAGAACTTACAACTAAGCTCATTTAGGATCTCTAAGGGGGCCTATCTTGGAGACTCTAATGTTCTTTTTATGAGGCTGCACCTTGAGAATGAGAGTGTAGTACCAAATATCAACGTGATTTGTTATGAAGTAATGTTTATTAAAGTGTCTATAGTTGCACTTTCGCTAAACGTATTTTACTTTATAGTAATAAAAATTTAGTTTGAACTCATTTACTTGTTTATCACCTAAAATTTTCTTTAAGTACAAGCTTCTGATTCTTTCGGCATGGGAATTCATCCACCTGCAGGATGAGAGTCATGATTACATTAAAAGGCAGCAGTTACGAGAACTCGCAATGCTAAATTCAAGTTTCAGAGAAGACAGTCCAGGACCTGGTGGTAACGTCTCTCCATTCAACTCAAGTGGAATGAAACGTGCTAAAACAGGTCGTTAAAATCGCTCGTATCGTTCTGTACCCTAAACAATGTCTACCCTTGGCCACTCGCATACCTTGAAGTGAATCACGACCAATCGTGTGACATAGCTACGACTACGAGAAAGGGGAGACTAACTTCAGCTCCTGGTGAGCCTTTGCTCACTTTTTCTGTGTTCCCTTAATATTTTTGACAGAAAGACTGGAAAAAGGGAAAAAAATAATATCTGAGGGTGAAAAAAATGGAAGTGTTGGCATTGGTAGGGGATTCTCATGTTGAGTGTAGGTTTGTTTAAGTCAGTTTTCCAACATAGTTAATATATTCATTGGATTTATTCTTGTATTAGTGACTGCTGAGGAGTGTGTAGTTTTTACATTATTGATGTCCCAAAAAATGTTAGGAGCTGATTGTGTAATACTATTTAATGTTTGTTCGGTATTGTATGCAATGTCGACGTCAATTATATTTTTGGACCGGTACATAAAAAGAACAGATTGTGCTGCAAAAACTCAGACAGTGCTGGTCAGTTTGTGTTTGCTTTTAGTTTTAGAATATGATTCTTCTTTTCTGTCTTTAATTTTGTCAAAAAGTTCAAAATATATTCCTTGACTATTGTTCCAAGTTCCAAC

mRNA sequence

TAACAATCATAGATTTTCCTCATTTCAGGCATTCACCCTTTTGCTCCTAATCTCCGCCTCCACCTCCGCCTCACTCGTCGGAGCCGTCCTTATCCACCGTCTTCTCCGGCGGAATCGCCGCCTCAACCCACCGAAATCCCCTCTTTCACTTTCCCAATCCCCCAATTCTCTGAGCTTCCAATTCAATAAACACGAAGCTATGTCGGGTATGTACAGCACCAATTTTTCCCCCGCAAGAACTGCTTCTCCTCACATCAGAGCCACTCCCGATGTCGACAGTCAGTACCTGTCGGAGCTACTAGCGGAGCATCAGAAGTTTGGCCCCTTCATGCAAGTTCTTCCGATCTGCAGCCGACTTTTGAATCAAGAGATATTGAGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGTGACCTTGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCGAACCTTATATCTAATGTTAGTAGTACAGGTTTCAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGATTAAGTAGACCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCACTAACCGTAAAGAGGATTCTACGTTTGGAAATACCCGTGGATACTTACCCCAATTTCAATTTTGTAGGGCGGCTTTTGGGACCTCGTGGTAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAACGGGTCGATAAAGGATCCAGACAAGGAAGAACAATTACGGGGACGACCTGGCTATGAGCACTTGAATGAACCGCTGCACATCTTGATTGAGGCAGATTTACCAGGCAATATTGTTGATATAAGACTCAGACAAGCACAGGAAATTATTGAAGAACTTCTCAAACCTGTGGATGAGAGTCATGATTACATTAAAAGGCAGCAGTTACGAGAACTCGCAATGCTAAATTCAAGTTTCAGAGAAGACAGTCCAGGACCTGGTGGTAACGTCTCTCCATTCAACTCAAGTGGAATGAAACGTGCTAAAACAGGTCGTTAAAATCGCTCGTATCGTTCTGTACCCTAAACAATGTCTACCCTTGGCCACTCGCATACCTTGAAGTGAATCACGACCAATCGTGTGACATAGCTACGACTACGAGAAAGGGGAGACTAACTTCAGCTCCTGGTGAGCCTTTGCTCACTTTTTCTGTGTTCCCTTAATATTTTTGACAGAAAGACTGGAAAAAGGGAAAAAAATAATATCTGAGGGTGAAAAAAATGGAAGTGTTGGCATTGGTAGGGGATTCTCATGTTGAGTGTAGGTTTGTTTAAGTCAGTTTTCCAACATAGTTAATATATTCATTGGATTTATTCTTGTATTAGTGACTGCTGAGGAGTGTGTAGTTTTTACATTATTGATGTCCCAAAAAATGTTAGGAGCTGATTGTGTAATACTATTTAATGTTTGTTCGGTATTGTATGCAATGTCGACGTCAATTATATTTTTGGACCGGTACATAAAAAGAACAGATTGTGCTGCAAAAACTCAGACAGTGCTGGTCAGTTTGTGTTTGCTTTTAGTTTTAGAATATGATTCTTCTTTTCTGTCTTTAATTTTGTCAAAAAGTTCAAAATATATTCCTTGACTATTGTTCCAAGTTCCAAC

Coding sequence (CDS)

ATGTCGGGTATGTACAGCACCAATTTTTCCCCCGCAAGAACTGCTTCTCCTCACATCAGAGCCACTCCCGATGTCGACAGTCAGTACCTGTCGGAGCTACTAGCGGAGCATCAGAAGTTTGGCCCCTTCATGCAAGTTCTTCCGATCTGCAGCCGACTTTTGAATCAAGAGATATTGAGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGTGACCTTGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCGAACCTTATATCTAATGTTAGTAGTACAGGTTTCAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGATTAAGTAGACCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCACTAACCGTAAAGAGGATTCTACGTTTGGAAATACCCGTGGATACTTACCCCAATTTCAATTTTGTAGGGCGGCTTTTGGGACCTCGTGGTAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAACGGGTCGATAAAGGATCCAGACAAGGAAGAACAATTACGGGGACGACCTGGCTATGAGCACTTGAATGAACCGCTGCACATCTTGATTGAGGCAGATTTACCAGGCAATATTGTTGATATAAGACTCAGACAAGCACAGGAAATTATTGAAGAACTTCTCAAACCTGTGGATGAGAGTCATGATTACATTAAAAGGCAGCAGTTACGAGAACTCGCAATGCTAAATTCAAGTTTCAGAGAAGACAGTCCAGGACCTGGTGGTAACGTCTCTCCATTCAACTCAAGTGGAATGAAACGTGCTAAAACAGGTCGTTAA

Protein sequence

MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDYIKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR

Homology

[Close]

BLAST of Sed0010727 vs. NCBI nr
Match: XP_022925242.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita moschata] >KAG7027519.1 KH domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 551.6 bits (1420), Expect = 3.9e-153
Identity = 273/282 (96.81%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQEQRLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Sed0010727 vs. NCBI nr
Match: XP_023518806.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.1 bits (1416), Expect = 1.1e-152
Identity = 272/282 (96.45%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDV+SQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQEQRLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Sed0010727 vs. NCBI nr
Match: XP_022966419.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 549.7 bits (1415), Expect = 1.5e-152
Identity = 272/282 (96.45%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFM VLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMHVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQEQRLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Sed0010727 vs. NCBI nr
Match: XP_011653733.1 (KH domain-containing protein At2g38610 isoform X1 [Cucumis sativus] >KAE8649596.1 hypothetical protein Csa_012547 [Cucumis sativus])

HSP 1 Score: 548.9 bits (1413), Expect = 2.6e-152
Identity = 270/282 (95.74%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL++NVSSTG SGWNGLPQEQRLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIEADLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Sed0010727 vs. NCBI nr
Match: XP_022925243.1 (KH domain-containing protein At3g08620-like isoform X2 [Cucurbita moschata] >KAG6595538.1 KH domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 545.0 bits (1403), Expect = 3.7e-151
Identity = 272/282 (96.45%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQE RLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQE-RLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Sed0010727 vs. ExPASy Swiss-Prot
Match: Q9ZVI3 (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.2e-125
Identity = 235/287 (81.88%), Postives = 255/287 (88.85%), Query Frame = 0


Query: 1   MSGMY--STNFSPARTASPHIRATPDVD-SQYLSELLAEHQKFGPFMQVLPICSRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP++D SQYL+ELLAEHQK  PFMQVLPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS+TG  GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 NGSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDES 240
            GSIKDP+KE++LRGRPGYEHLNE LHILIEADLP +IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREDSPGP--GGNVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + RE+SPGP  GG+VSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Sed0010727 vs. ExPASy Swiss-Prot
Match: Q8GYR4 (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 2.1e-125
Identity = 224/284 (78.87%), Postives = 249/284 (87.68%), Query Frame = 0


Query: 1   MSGMYS-TNFSPARTASPHIRA-TPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEI 60
           MSG+Y+  NFSP+R ASP IR  + DVDSQY+S+LLAEHQK GPFMQVLPICSRLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTM 120
            R++GMM NQGF D DRLRHRSPSPMAS NL+SNVS  G  GWNGLP E R+  P GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGN 180
           +WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRG 
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESH 240
           GSIKDP+KEE+L+G+PGYEHLNE LHILIEADLP +IVDI+LRQAQEIIEEL+KPVDES 
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           DYIKRQQLRELA+LNS+ RE+SPGP G+VSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Sed0010727 vs. ExPASy Swiss-Prot
Match: Q75GR5 (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 6.4e-114
Identity = 206/283 (72.79%), Postives = 238/283 (84.10%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATP-DVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEIL 60
           MSG+YS  FSPAR  SP IR+ P DVDSQYL+ELLAEHQK GPFMQVLPICS+LL+QEI+
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60

Query: 61  RVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMD 120
           RVS ++ N GF D DR R RSPSPM+S N  SN S  GFS WNGL QE RL  P G +MD
Sbjct: 61  RVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQE-RLGFPQGTSMD 120

Query: 121 WQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNG 180
           WQ AP SPSS  VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVE +TGCRV+IRG G
Sbjct: 121 WQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKG 180

Query: 181 SIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHD 240
           SIKDP KE++LRG+PGYEHL++PLHILIEA+ P +I+D RLR AQE+IEELLKPVDES D
Sbjct: 181 SIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQD 240

Query: 241 YIKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           + KRQQLRELAMLNS+ REDSP P G+VSPF++ GMKRAKTG+
Sbjct: 241 FYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281

[Close]

BLAST of Sed0010727 vs. ExPASy Swiss-Prot
Match: Q0WLR1 (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.8e-77
Identity = 154/280 (55.00%), Postives = 195/280 (69.64%), Query Frame = 0


Query: 2   SGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRV 61
           S   S NFS    + P      +   +YLSELLAE  K  PF+ VLP   RL+NQEILRV
Sbjct: 37  SAPQSPNFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRV 96

Query: 62  SGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGW-NGLPQEQRLSRPPGMTMDW 121
           + ++ N     L + R   PSP+AS  +  N S    +GW +  P E+ +S  P    +W
Sbjct: 97  TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSP--APNW 156

Query: 122 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 181
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG GS
Sbjct: 157 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 216

Query: 182 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 241
           IKDP KE+ +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+HD+
Sbjct: 217 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 276

Query: 242 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKT 281
            K+QQLRELA+LN S RE+     G++SP+NS GMKRAKT
Sbjct: 277 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Sed0010727 vs. ExPASy Swiss-Prot
Match: Q9FKT4 (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-76
Identity = 156/286 (54.55%), Postives = 198/286 (69.23%), Query Frame = 0


Query: 5   YSTNFS--PARTASPH----IRATPDV---DSQYLSELLAEHQKFGPFMQVLPICSRLLN 64
           YS++ S  P+   SP+    +R+   V     +YLSELLAE  K  PF+ VLP   RLLN
Sbjct: 32  YSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLN 91

Query: 65  QEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGW-NGLPQEQRLSRPP 124
           QEILRV+ ++ N        L H  PSP+AS  +  N +    +GW +  P E+ +   P
Sbjct: 92  QEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQN-ARADMNGWASQFPSERSVPSSP 151

Query: 125 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 184
           G   +W ++P S S L  KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVE +T CRV 
Sbjct: 152 G--PNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVL 211

Query: 185 IRGNGSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPV 244
           IRG GSIKDP KEE +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL P+
Sbjct: 212 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 271

Query: 245 DESHDYIKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKT 281
           +E+HD  K+QQLRELA+LN + RE+     G+VSP+NS GMKRAKT
Sbjct: 272 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of Sed0010727 vs. ExPASy TrEMBL
Match: A0A6J1EB88 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432543 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.9e-153
Identity = 273/282 (96.81%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQEQRLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Sed0010727 vs. ExPASy TrEMBL
Match: A0A6J1HTR7 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466075 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 7.3e-153
Identity = 272/282 (96.45%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFM VLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMHVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQEQRLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Sed0010727 vs. ExPASy TrEMBL
Match: A0A6J1EEN1 (KH domain-containing protein At3g08620-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432543 PE=4 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.8e-151
Identity = 272/282 (96.45%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQE RLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQE-RLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Sed0010727 vs. ExPASy TrEMBL
Match: A0A1S3CIV3 (KH domain-containing protein At2g38610 OS=Cucumis melo OX=3656 GN=LOC103501485 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.2e-151
Identity = 270/282 (95.74%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVSSTG SGWNGLPQE RLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIEADLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Sed0010727 vs. ExPASy TrEMBL
Match: A0A6J1HRK9 (KH domain-containing protein At3g08620-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466075 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 6.8e-151
Identity = 271/282 (96.10%), Postives = 274/282 (97.16%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIR TPDVDSQYLSELLAEHQKFGPFM VLPICSRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMHVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSS G SGWNGLPQE RLSRPPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQE-RLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG GS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEE+LRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFRE+SPGPGG+VSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Sed0010727 vs. TAIR 10
Match: AT2G38610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 450.7 bits (1158), Expect = 8.8e-127
Identity = 235/287 (81.88%), Postives = 255/287 (88.85%), Query Frame = 0


Query: 1   MSGMY--STNFSPARTASPHIRATPDVD-SQYLSELLAEHQKFGPFMQVLPICSRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP++D SQYL+ELLAEHQK  PFMQVLPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS+TG  GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 NGSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDES 240
            GSIKDP+KE++LRGRPGYEHLNE LHILIEADLP +IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREDSPGP--GGNVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + RE+SPGP  GG+VSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Sed0010727 vs. TAIR 10
Match: AT2G38610.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 450.7 bits (1158), Expect = 8.8e-127
Identity = 235/287 (81.88%), Postives = 255/287 (88.85%), Query Frame = 0


Query: 1   MSGMY--STNFSPARTASPHIRATPDVD-SQYLSELLAEHQKFGPFMQVLPICSRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP++D SQYL+ELLAEHQK  PFMQVLPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS+TG  GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 NGSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDES 240
            GSIKDP+KE++LRGRPGYEHLNE LHILIEADLP +IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREDSPGP--GGNVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + RE+SPGP  GG+VSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Sed0010727 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 449.9 bits (1156), Expect = 1.5e-126
Identity = 224/284 (78.87%), Postives = 249/284 (87.68%), Query Frame = 0


Query: 1   MSGMYS-TNFSPARTASPHIRA-TPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEI 60
           MSG+Y+  NFSP+R ASP IR  + DVDSQY+S+LLAEHQK GPFMQVLPICSRLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGWNGLPQEQRLSRPPGMTM 120
            R++GMM NQGF D DRLRHRSPSPMAS NL+SNVS  G  GWNGLP E R+  P GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGN 180
           +WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRG 
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESH 240
           GSIKDP+KEE+L+G+PGYEHLNE LHILIEADLP +IVDI+LRQAQEIIEEL+KPVDES 
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKTGR 283
           DYIKRQQLRELA+LNS+ RE+SPGP G+VSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Sed0010727 vs. TAIR 10
Match: AT4G26480.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-78
Identity = 154/280 (55.00%), Postives = 195/280 (69.64%), Query Frame = 0


Query: 2   SGMYSTNFSPARTASPHIRATPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRV 61
           S   S NFS    + P      +   +YLSELLAE  K  PF+ VLP   RL+NQEILRV
Sbjct: 37  SAPQSPNFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRV 96

Query: 62  SGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGW-NGLPQEQRLSRPPGMTMDW 121
           + ++ N     L + R   PSP+AS  +  N S    +GW +  P E+ +S  P    +W
Sbjct: 97  TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSP--APNW 156

Query: 122 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGNGS 181
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG GS
Sbjct: 157 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 216

Query: 182 IKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPVDESHDY 241
           IKDP KE+ +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+HD+
Sbjct: 217 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 276

Query: 242 IKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKT 281
            K+QQLRELA+LN S RE+     G++SP+NS GMKRAKT
Sbjct: 277 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Sed0010727 vs. TAIR 10
Match: AT5G56140.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.9e-77
Identity = 156/286 (54.55%), Postives = 198/286 (69.23%), Query Frame = 0


Query: 5   YSTNFS--PARTASPH----IRATPDV---DSQYLSELLAEHQKFGPFMQVLPICSRLLN 64
           YS++ S  P+   SP+    +R+   V     +YLSELLAE  K  PF+ VLP   RLLN
Sbjct: 32  YSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLN 91

Query: 65  QEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSTGFSGW-NGLPQEQRLSRPP 124
           QEILRV+ ++ N        L H  PSP+AS  +  N +    +GW +  P E+ +   P
Sbjct: 92  QEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQN-ARADMNGWASQFPSERSVPSSP 151

Query: 125 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 184
           G   +W ++P S S L  KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVE +T CRV 
Sbjct: 152 G--PNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVL 211

Query: 185 IRGNGSIKDPDKEEQLRGRPGYEHLNEPLHILIEADLPGNIVDIRLRQAQEIIEELLKPV 244
           IRG GSIKDP KEE +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL P+
Sbjct: 212 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 271

Query: 245 DESHDYIKRQQLRELAMLNSSFREDSPGPGGNVSPFNSSGMKRAKT 281
           +E+HD  K+QQLRELA+LN + RE+     G+VSP+NS GMKRAKT
Sbjct: 272 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

The following BLAST results are available for this feature:

BLAST of Sed0010727 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925242.1	3.9e-153	96.81	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita moschata] >KAG...	[more]
XP_023518806.1	1.1e-152	96.45	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022966419.1	1.5e-152	96.45	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita maxima]	[more]
XP_011653733.1	2.6e-152	95.74	KH domain-containing protein At2g38610 isoform X1 [Cucumis sativus] >KAE8649596....	[more]
XP_022925243.1	3.7e-151	96.45	KH domain-containing protein At3g08620-like isoform X2 [Cucurbita moschata] >KAG...	[more]

BLAST of Sed0010727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVI3	1.2e-125	81.88	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38...	[more]
Q8GYR4	2.1e-125	78.87	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08...	[more]
Q75GR5	6.4e-114	72.79	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
Q0WLR1	4.8e-77	55.00	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26...	[more]
Q9FKT4	4.1e-76	54.55	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56...	[more]

BLAST of Sed0010727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EB88	1.9e-153	96.81	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1HTR7	7.3e-153	96.45	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1EEN1	1.8e-151	96.45	KH domain-containing protein At3g08620-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A1S3CIV3	5.2e-151	95.74	KH domain-containing protein At2g38610 OS=Cucumis melo OX=3656 GN=LOC103501485 P...	[more]
A0A6J1HRK9	6.8e-151	96.10	KH domain-containing protein At3g08620-like isoform X2 OS=Cucurbita maxima OX=36...	[more]

BLAST of Sed0010727 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38610.1	8.8e-127	81.88	RNA-binding KH domain-containing protein	[more]
AT2G38610.2	8.8e-127	81.88	RNA-binding KH domain-containing protein	[more]
AT3G08620.1	1.5e-126	78.87	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	3.4e-78	55.00	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	2.9e-77	54.55	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 131..231 e-value: 9.7E-6 score: 35.1
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 20..262 e-value: 6.4E-68 score: 230.8
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 138..254
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 23..70 e-value: 1.9E-13 score: 49.8
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 148..185 e-value: 9.9E-5 score: 22.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..281
None	No IPR available	PANTHER	PTHR11208:SF114	STAR PROTEIN, HOMODIMERIZATION REGION-RELATED	coord: 2..281
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 148..205 score: 8.261171
None	No IPR available	CDD	cd02395	SF1_like-KH	coord: 136..256 e-value: 1.73726E-53 score: 168.191
IPR045071	KH domain-containing BBP-like	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 2..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010727.1	Sed0010727.1	mRNA
Sed0010727.2	Sed0010727.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding