Sed0010722 (gene) Chayote v1

Overview


Name	Sed0010722
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Rep_fac-A_C domain-containing protein
Location	LG05: 39363094 .. 39368212 (-)
RNA-Seq Expression	Sed0010722
Synteny	Sed0010722

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGACATGAGAAAAAAAAGGGTCTCTTTTATTCTTTTGATTTTCCCCCCAAAAACCCAACTTTTGGGGAATCTGAACAGTGAGTATCGATTTGAGCGCGGCGGCGTTGTCCAGTTGCCAGCAACGGAGGCTGCAATGGAAAAGCCAATATCAAGCATTTGCGCAGTGATAGCCATTGATCACACCAATTTCTGTTACAGGGTTTGTTCTATTTGTGAGAGGCCTTTACCCGATAACCCCTCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCAGCTCCTCCTCCTCCTCTAAACGCCTCTTTCGTTTACTTGTCAGTATTTCACCCTTTCTATTTCGGATTTTAACTTTAATATGATCTTTTCGTTGCATTTCCGCTTCAAATGTTTATGGGAAATGTTGGGTTTATGTTTATTTTTGTGTGTTTTACTCATTTTGGACTTCATTGTATGTTTTCTGGAGGAAATGTTTTGTTGTTTAAGATGGGTTTGGTGTTGTGTATTGCATATTTACATGATTCCTCTAATTGGGGTTCCTTTATTTTCATTTGCTTTTGGGCAGTTGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGACAGGGCTGCAAGGGTTCTGTTTGGTTGCTCTGCTGACGAGTTTTTCGACTTTGCAAAGCTTCATCCTTTTGCTGGTAAATTCCCTCTGTATTTGTGAGTTACTTCTCATTGGTTTGATTGAGATTCTCTTTCATGCCTATAGAAAAGAATCATAAGGCATTATCCCTTTGCCTAAGAGGAGAGGTCAAACAATAGGCTTCCTGTAAATTAATGATCATCAACAGTTGTATTGAAAATATGTTCGTGAAATTTTGTTTATTCTTATTTCATCTAAGCTGTTCTGTTTCCATTGATCCGATTGGTGGTTGAATTTTCATTTTCTACTGCAGCTGAAACTGCAAATGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCTAGAGCTGTACAAATTGTGCCACTAAGTTCAAGTTTTCGACCAGCAATTCTGAGACTGAGGGAATTGTATGGGGTAAGATTTAAGAAGAGAAGCTGCTCTTAATATTCCTCCCTTTATCATGAGTTCTTATTTATTTTTATTTTTTTGTGGATAAAACAATTTCATTCATGGGTGAAATTTGGGGCCCTATTGGGTTAGCTTATAAAAGACCTCTCCCAATTATAGAAGAGAAAAGAGTAATCATCTTTTTCCTTCCTTTAAAAAGTTGGTCGCCAAGGGTATAGTCAAGCAAAATGGAGAGGTCTCTAGGCAGGGCGGTTTGCCAATTAAAAGCTGTCAAAATTTGATTAAAAAAACCAGCATAACTTCATAAACCAAAGAGATGAGCTTGAGATTCATTGTCTACTTAGCAGAGGCAGCACCAATGTGGTTAAAGAGACATATGTGGAAGTCTACTTTAAACCTTGTCAAGGGTGTTGATGGCCTTAAGAACAAACTCCGAAAGGAGGAATTTGATCTTCTTTTGGACATTTGCTTTTCCAAATGATGTTGAAAATACGGTTATTTTTATTTTTATTTTTTGGATGAAGGAAAATATGGTTATTAGGAACATCACTCTTCCCGGAAGAACAATTCATTAGAGATTTAATGGAGAAGGAACCCTATATTAGATAGTGTGAACATCCATTTTAAAACCAATCGTAATGAGAGGAGTAGTTCACCTTTCTTATATATTTTTATGAGATCTCCACTCTTTTCGATGTGGAATCCTAACATGCCTTCTTCAAGATGGTCCTCTTTTGGGCTCACCAATCATGAATCAAGTTTCAATTTTATTTTTATTGGACCAAATATCCGTTTGGGATTTATGGACTCTGATACCATATTAGATAGTGTGGGCATTCATCTTAAAAGCAATTGGCGACAAGAGGAGTAGTCTACCTTTCTGATAAGGTTGGGCCTAGGGCTCGGTTGGGCCTAGGGCTCTATTTAGCAATTACTTGGAGAATAAGTTAGGATTTTGTTATAAATAGAGTGGGTTAGGTTAGGGTTTAGGCATCCAATTGTTAAATGAGTTATTGAGTGATTTATTGTAGGACTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGACCTATCAAAACTTGGCTTATCTTTATTCTTTTATCATTTGATATAATCTAGATCCTGGATCATATCAATTGGTATCAGAGCCGTTTGCCGATCCGGGAATGGTTACTACTAAGATGGAAACAAGGATGCTTGAGTGTGAAGAAAGAACGACCGACTTGGCGAGGAAGTTACAGGAGACGAACGCAAAGAGGGAATTGATGGAGGAGCGATTGGGAAGAAAGATAGATTTGCAGGATTTGAAGTTCGAGAGCATAAACCGGAAGCTAGAACTATTAATGGAGTCATTCCGAGCTTACAAAGGGAAGGGTTTAATGATCGAGGCCTCGGAGGGTGGTGTGGCAGCTAGGGTTTTTACACCGTCGCCGCCACCTCCGACATCGTTGCCGCCACCTCCGCAATCATCGCCGCCGCCACCGCTGTCGCCATCACCACCTCTGCCACTACCATCTCCGCCGCCACCTCCGACATCACCGCCGCCACCACCACCGCCGCCACCTTCGCCACCACCTCCGCCATCGCTGTCGCCACCAACGCCGCCGTTTCCGCCACCACCGACACGCCGCTGCTGCCGCCGGAAAAAAAAAAAAAATTGTTTTCATTTTTTATTTTTCTATTTTTGTGTATGCTCACCTTGAGGACAAGGTGCTTTAAAGGGGCGGGTATTGATAAGGTTGGGCTTAGGGCTCTATTTAGCAATTACTTGGAGAATAAGTTAGGATTTTGTTATAAATAGAGTGGGTTAGGTTAGGGTTTAGGCATCCAATTGTTAAATGAGTTATTGAGTGATTTATTGTAGGGCTCAAGAGATTCACTTGAGAAGGGAGGTTCCAAGACCTATCAAAACTTGACTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATCCGGGATCATATCACTTTCTTACATATTATTATGAGGTTTTCACTCTTTGCGATGTGCGATCCTAACACCCTGTGGATTTGGATTTTAGTGAGCAATGTCCTTTCAATTGTTAAGAGAGATAGTGATCAAAATCTTAGACAAAACCGCATATTCCTCTACTTCGTCTTCTCTCATATTTCTTCCAAAGCCAAAATTTAAGTATTGATCGAATCAATCCCATAACTCTCTAATAGTGCCATTTTTTTTACTAGTAATGTGGAATTGATGAGGGAAGCATCTAAACAATGGGGCGTCCATAATCCAAGGATCATTCCACAATGATATGGACTCATTATAACCAACTTTGAAGATGGTTCTATAATGAATAGGTTCCCGAAGTTGAGAATGCTTTTCTATAGTTGAGATATGCCTTGAACCATGATAATCCACGATTACTTAGTTAGGGGTGTCGCTACCCGATTAGTGAGTTGGGATCTTGAAATATGTTATTGAGGTTATGTTTTCGTATTTGGGCTCTTCTGTTTTTTGGGTTATATTTTGTAATAGGGTTTTTATGAGAGTGCTTGTGCACTATATAAACTCTTTTTTAAAAAAATAAGGATGACCACGCCCGTCCCTAGGACAGGCACCGAAGACATCAAAGGAGTAATGTCACATGTGAGACTCGAACTTGGGACCTTGAGGGGAGCATACCCTCAAAATCCAAGTCTTTAACCACTATGCCACCCCTTGGGGACACTATATAAACTCTTCTAAAACCCTAGCCTCGGTTGATCGACATTCTTGTATTTGTATCTCTCATTAATAAAACAGTTCTCTTCTCTACATGTAGACATAACTAACGTATTGTTAGTGAACTACCTAAATCATCGTGTTTTGTCTTGCATTCCTTACTGTTTTTCTTTAATTTGTTAATTCCATTTTCATAACATCTATAGTCCATGAGTTGCACTCAAAGACTTGTTGGAATATTGGGTCTAGGAGAGACTCTATATTTAGCATCTATTATCCTCCTTCATAGTGGCCTTTTCTTATTAGTGTATCTCAAGGATCATTTGAATAGCAAATCAATATTCTTTTATTTGAGGTCTTAAAGTCCAATGCCACCATTTTCAATTGGGAGAAGGAACTTTGACCATCTAACTAAATGAATACCTTTGTTGTCTTCTTATCCTTTCCGAAGAAAATTCTTGATGATCCTTTCTGTAGGATTGAAAGGTAACACTAGAGGGGGGTGAGTAGAGTTTGTCCGCTTTTTAATTTTTAGATAGAACTGTGACCTTCCCATCCTCTTATTGGAGTGTTAAGCCGCCATAATACACTGAAGATTATTATTTTAGATATTGGAGAACTGAGGTAAATGTGAAACGAGCTAGTTCCTGGTAGGTGTACTTAGAGAGAATGGAAGCTCTTGAATTCTTTCAGTTGTATTGTTGTCATCGGTTTATATTGTATTCCCTAGAGAATAGACTTGTTAAACTGGTTTGGAATTTCATATTCTTATGTCAATCTATAGTGTAGAAACTTAGTACATTGTTAAGATGAGGGAAAAGACTCGAAGTTAAGATCCAATTTATAAATTATTGTGGTGTTTTCTGCATCTCTAATTGTAAACATCCAATGCCTTTGCTTTTTGTCACAGAACAAGAACTAGTATAATACTTCAATGGAGCTGCACAGGCTTGTCATTTTATGCATCTGGACAAAAATTAGCATCAAACTCAAAGCCGTCTAAACCAGTCCGAAAGCTCCATTCTTCTTTGTCATAATGTAAGTAAGTTACCGATGTTATAAATCGAGCTCAATGCAGAGTCGGGTGAATTTGTCCCTTCAGCTTTTGTTGCTCTTCCTCCCACATTTTGACATTGATTCAAGTCCTGAGACAGTTTAACTTCCAAAACTTGATATATAATCCCTGCATACTGATGTTTTTTGAAACAAGGGTAGCCACGCCCGTCCTTAGGTTAGACATCAGAGATATCAAAAAAGTAATATCACAAGTGAGTTTCGAATTTAGGACCTTGAGGTGAGCATATCCTTAAATGCCAAGTTTTTAACTACAGCGC

mRNA sequence

ATTTGACATGAGAAAAAAAAGGGTCTCTTTTATTCTTTTGATTTTCCCCCCAAAAACCCAACTTTTGGGGAATCTGAACAGTGAGTATCGATTTGAGCGCGGCGGCGTTGTCCAGTTGCCAGCAACGGAGGCTGCAATGGAAAAGCCAATATCAAGCATTTGCGCAGTGATAGCCATTGATCACACCAATTTCTGTTACAGGGTTTGTTCTATTTGTGAGAGGCCTTTACCCGATAACCCCTCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCAGCTCCTCCTCCTCCTCTAAACGCCTCTTTCGTTTACTTTTGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGACAGGGCTGCAAGGGTTCTGTTTGGTTGCTCTGCTGACGAGTTTTTCGACTTTGCAAAGCTTCATCCTTTTGCTGCTGAAACTGCAAATGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCTAGAGCTGTACAAATTGTGCCACTAAGTTCAAGTTTTCGACCAGCAATTCTGAGACTGAGGGAATTGTATGGGAACAAGAACTAGTATAATACTTCAATGGAGCTGCACAGGCTTGTCATTTTATGCATCTGGACAAAAATTAGCATCAAACTCAAAGCCGTCTAAACCAGTCCGAAAGCTCCATTCTTCTTTGTCATAATGTAAGTAAGTTACCGATGTTATAAATCGAGCTCAATGCAGAGTCGGGTGAATTTGTCCCTTCAGCTTTTGTTGCTCTTCCTCCCACATTTTGACATTGATTCAAGTCCTGAGACAGTTTAACTTCCAAAACTTGATATATAATCCCTGCATACTGATGTTTTTTGAAACAAGGGTAGCCACGCCCGTCCTTAGGTTAGACATCAGAGATATCAAAAAAGTAATATCACAAGTGAGTTTCGAATTTAGGACCTTGAGGTGAGCATATCCTTAAATGCCAAGTTTTTAACTACAGCGC

Coding sequence (CDS)

ATGAGAAAAAAAAGGGTCTCTTTTATTCTTTTGATTTTCCCCCCAAAAACCCAACTTTTGGGGAATCTGAACAGTGAGTATCGATTTGAGCGCGGCGGCGTTGTCCAGTTGCCAGCAACGGAGGCTGCAATGGAAAAGCCAATATCAAGCATTTGCGCAGTGATAGCCATTGATCACACCAATTTCTGTTACAGGGTTTGTTCTATTTGTGAGAGGCCTTTACCCGATAACCCCTCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCAGCTCCTCCTCCTCCTCTAAACGCCTCTTTCGTTTACTTTTGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGACAGGGCTGCAAGGGTTCTGTTTGGTTGCTCTGCTGACGAGTTTTTCGACTTTGCAAAGCTTCATCCTTTTGCTGCTGAAACTGCAAATGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCTAGAGCTGTACAAATTGTGCCACTAAGTTCAAGTTTTCGACCAGCAATTCTGAGACTGAGGGAATTGTATGGGAACAAGAACTAG

Protein sequence

MRKKRVSFILLIFPPKTQLLGNLNSEYRFERGGVVQLPATEAAMEKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN

Homology

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BLAST of Sed0010722 vs. NCBI nr
Match: XP_022140388.1 (uncharacterized protein LOC111011075 [Momordica charantia])

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-72
Identity = 136/157 (86.62%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++C V+A+DH++FCYRVCSICER LPDNPSSSLCKFCNFNAFNP   SSSKRLFR
Sbjct: 4   DKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNP-GFSSSKRLFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           LL+SIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETA+EILEGEMFRMTIS
Sbjct: 64  LLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETASEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN 202
           KPKNGNAQHSR VQ+VPLSS F+PAI+RLRELYGNK+
Sbjct: 124 KPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYGNKS 159

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BLAST of Sed0010722 vs. NCBI nr
Match: XP_038901726.1 (uncharacterized protein LOC120088466 [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-71
Identity = 135/157 (85.99%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++CAVIA+DHT+FCYRVCSICER LPDNPSSS+CKFCNFNAFNP S SSSKR+FR
Sbjct: 4   DKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPSSSVCKFCNFNAFNP-SLSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           LL+SIATD+KVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAET +EILEGEMFR+TIS
Sbjct: 64  LLMSIATDRKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN 202
           KPKNGNAQHSR VQ+VPLSS F+PAI RLRELYGNK+
Sbjct: 124 KPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELYGNKS 159

[Close]

BLAST of Sed0010722 vs. NCBI nr
Match: XP_023512879.1 (uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68
Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR
Sbjct: 4   DKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP-CSSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           LL+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE  +EILEGEMFRMTIS
Sbjct: 64  LLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           KPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Sbjct: 124 KPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 156

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BLAST of Sed0010722 vs. NCBI nr
Match: XP_022943427.1 (uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_022943428.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >KAG7010655.1 hypothetical protein SDJN02_27450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-68
Identity = 131/154 (85.06%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR
Sbjct: 4   DKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP-GSSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           +L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE  +EILEGEMFRMTIS
Sbjct: 64  ILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           KPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Sbjct: 124 KPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 156

[Close]

BLAST of Sed0010722 vs. NCBI nr
Match: XP_022943430.1 (uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata])

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-68
Identity = 131/154 (85.06%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR
Sbjct: 4   DKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP-GSSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           +L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE  +EILEGEMFRMTIS
Sbjct: 64  ILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           KPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Sbjct: 124 KPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 156

[Close]

BLAST of Sed0010722 vs. ExPASy TrEMBL
Match: A0A6J1CHW5 (uncharacterized protein LOC111011075 OS=Momordica charantia OX=3673 GN=LOC111011075 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.6e-72
Identity = 136/157 (86.62%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++C V+A+DH++FCYRVCSICER LPDNPSSSLCKFCNFNAFNP   SSSKRLFR
Sbjct: 4   DKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNP-GFSSSKRLFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           LL+SIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETA+EILEGEMFRMTIS
Sbjct: 64  LLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETASEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN 202
           KPKNGNAQHSR VQ+VPLSS F+PAI+RLRELYGNK+
Sbjct: 124 KPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYGNKS 159

[Close]

BLAST of Sed0010722 vs. ExPASy TrEMBL
Match: A0A6J1FWW9 (uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 7.9e-69
Identity = 131/154 (85.06%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR
Sbjct: 4   DKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP-GSSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           +L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE  +EILEGEMFRMTIS
Sbjct: 64  ILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           KPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Sbjct: 124 KPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 156

[Close]

BLAST of Sed0010722 vs. ExPASy TrEMBL
Match: A0A6J1FXT2 (uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 7.9e-69
Identity = 131/154 (85.06%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR
Sbjct: 4   DKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP-GSSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           +L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE  +EILEGEMFRMTIS
Sbjct: 64  ILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           KPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Sbjct: 124 KPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 156

[Close]

BLAST of Sed0010722 vs. ExPASy TrEMBL
Match: A0A1S3CNQ4 (uncharacterized protein LOC103503028 OS=Cucumis melo OX=3656 GN=LOC103503028 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 5.1e-68
Identity = 131/153 (85.62%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 46  KPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRL 105
           KPI+++CAVIA+D+TNFCYRVCSICER LP NPSSSLCKFCNFNAFNP  SSSSKR+FRL
Sbjct: 5   KPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNP-GSSSSKRVFRL 64

Query: 106 LLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTISK 165
           L+SIATDK+VQTVICFDR A+VLFGCSADEFFDFAKLHPFAAET +EIL GEMFR+TISK
Sbjct: 65  LMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISK 124

Query: 166 PKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           PKNGNAQHSR VQIVPLSS F+PAI+RLRELYG
Sbjct: 125 PKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 156

[Close]

BLAST of Sed0010722 vs. ExPASy TrEMBL
Match: A0A6J1J8M2 (uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.8e-68
Identity = 130/154 (84.42%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 45  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFR 104
           +K I+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR
Sbjct: 4   DKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP-GSSSSKRVFR 63

Query: 105 LLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTIS 164
           +L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE  +EILEGEMFRMTIS
Sbjct: 64  ILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTIS 123

Query: 165 KPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG 199
           KPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Sbjct: 124 KPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYG 156

[Close]

BLAST of Sed0010722 vs. TAIR 10
Match: AT2G28105.1 (CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-41
Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 44  MEKPISSICAVIAIDHTNFCYRVCSICERPLP-DN---PSSSLCKFCNFNAFNPSSSSSS 103
           ME   + +C ++A+D T++CYRVCS C+R LP DN    SSS CKFC         S   
Sbjct: 1   MEATETVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFC--------KSKEP 60

Query: 104 KRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMF 163
           K L+R+L+SIATD  V+TVICFDRAA VLFGCSADEFF F KL+P AA   N++ +GEM 
Sbjct: 61  KLLYRILMSIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEML 120

Query: 164 RMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLREL 197
           RMT+++P+N NAQH R   +VPL S  +PAI+ LR++
Sbjct: 121 RMTLTRPQNRNAQHMRVASVVPLRSGVQPAIVTLRQI 149

The following BLAST results are available for this feature:

BLAST of Sed0010722 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140388.1	5.4e-72	86.62	uncharacterized protein LOC111011075 [Momordica charantia]	[more]
XP_038901726.1	2.1e-71	85.99	uncharacterized protein LOC120088466 [Benincasa hispida]	[more]
XP_023512879.1	1.3e-68	85.71	uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022943427.1	1.6e-68	85.06	uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_0229434...	[more]
XP_022943430.1	1.6e-68	85.06	uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]	[more]

BLAST of Sed0010722 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010722 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHW5	2.6e-72	86.62	uncharacterized protein LOC111011075 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1FWW9	7.9e-69	85.06	uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FXT2	7.9e-69	85.06	uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3CNQ4	5.1e-68	85.62	uncharacterized protein LOC103503028 OS=Cucumis melo OX=3656 GN=LOC103503028 PE=...	[more]
A0A6J1J8M2	8.8e-68	84.42	uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0010722 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28105.1	1.4e-41	54.14	CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR0160...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 34..184 e-value: 1.1E-13 score: 52.9
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 49..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010722.1	Sed0010722.1	mRNA