Sed0010711 (gene) Chayote v1

Overview
NameSed0010711
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S28
LocationLG03: 15676536 .. 15678935 (+)
RNA-Seq ExpressionSed0010711
SyntenySed0010711
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAACCTAACCCTAACAGCGCTGATCGTTTCTCCTTGCCGCACATAGTTCTGCATCCAAGTTCTTCCTTCAAGCTCTCAGGTTTTCTCTCTAACCTCGCTATCTCCTTCATTCTTTTGTTCCATCTCAAATATTGTTGGCTGCAATTATTTCTCTGCTAGTTACTTCATCACGATCTCTGCGATTTCCTAGATTTTTTGCTCTTCATTCCTTGTTTTCATGATTCTGTTTCTGCTATCGAACTGTTAACGAGGAAGATGATTTTCGAATTGTAATTAAACATGAAACGAAAGTAATTTTGAAATTGGTTTTCGTATGAAGGAGATGGTTTTTGTGTTTAAAAATGCCTGATATTCTACGCGGATCTCTTACCCTATGGACTTAGTTCAATATTTGTGAAGTTATATCGACATGTGCTTTCTGAAAGTTAAGGCCGGATTGATAACCATTTGTTTTCTGTTTTTATTTTTAATGTTATAAAAACAGGTTTGTTTGATAACCCATTTTGGTTTTAAAATTTTAAAAAACATTTAAAAATAGTAAAGGAATTTTAAAAGCTAAAAAAAAAGTAGCGTTTAAGAACTTGTTTTTGTTTTTAAAAAAGCATGAACAAATCAAGATTGAACAGGAAAACACTAAAAAAATCAAAACAAAATGGGATGTTTGTAAGAAAAAAAAACGTTTACTGGTTTTTAGTTTTTGAAAACATAAAACTTTTCAAAAACTAAAAACGGTTATCAAACATATACCGTTTTTATTTTTTAATACAAAAAACCAAAAACTAAAAATAACTAGAAAAAAAAATCATATGTTTATCAAATGGAGCCCAAACACTTAAAGTTTGTTTGTAGTTTTTATTTATATTCATCTGGGCTAACTTCTCTACCAATGTCACGGACATACTATCTAATAACCCAACATTTGTATAACTGTTGGGTTCGTGTTAAATCGTTTGTTGTATTATTGGTTTTAATATCAATTATTTGTTGTATTATTATTTAGCAAGTATTTGTTGTATTATTATTTTAGCAAGTATTTGTTGTATTATTAAAATCTTTTTTCACCCGGACCTGTGTTTGTGAGTATTTTTGTAAATGTTTCTAGGATAAGTTCGATTAAAATAAATCCTTAACTGCCCACATGGGGCAAACTATCCTACCCTTTAATATTTGGTTGTTGAGTAATCAATAAATTATTCATAAGTGGCGGTGCTATGCTATCATGAATTGAACTCATATTTTCTTTTATCTCGAATACCCTCTCGTCCATTTGGCACATTATTGTTTATGTTTGTAGAAATCTTATGGATACTAGATTTTTTCAAAAATACTTGAAGCAGCCACTGTAGATTAATGACCTAGTACTCGTGGTCACGGGTCATCGAATGTTGGCCATCTTGAGAAAATATAAAATATAAAATTCTATTTCACTAGCAACCAAATGGAGTAAGATTAGTTTTGTAAGATAAGTCGAATATAAAATTATATATATATATATAAATAAATGTACACACACTTGATAGCACTCTAAGTCAATAAATATTAGTTACTTTTTTACTAAATTGGTTGTGGTTCAAGTACTTTTACTTATAGAACTTAAATTTAAGTGGGCATTTGAGGGAAGGTTTATAAGAATGATTAAGTGAAGAATGAAAATTAGGGGGAGGAATAGGATATGTACGAGTGATTATGGGGAGGAATCATTACTGGTGTTTGGGTTAAAGAGAATAATTAGGGAGAATAAATTAGTTAGTAGTAGGATAATGAAAAGTAGTTTGGAGAAAATTGAAAGTTGTTAAGTAGTTATAGGTGAACTTGATTATGAGGTGAATAATCCCGGTGGCCCAAACATGGGTTAGATAATTATTCTCATTTTCCTAGTAGTTCTTCCCACCAACATAAGTATAAGGCCATTACAGGAAAAAATAACACACTCTGATTGTTACGTAAGTAGTGTTTTTTAATGTTTTCTAATGTGTGTGTGTGTGTTTTTTTTATAGGAATGGAGTCACAGATCAAGCATGCTGTGGTGGTGAAGGTAATGGGTAGAACTGGATCGCGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAACCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTGCTCGAGTCCGAGAGGGAAGCCAGAAGGTTGCGTTGATGCGGGAGAATTGCTGTTGCTTCCATCATCTTTCCTCCTTATAAGTTTTAATTTTAGTGACTAGTGTGTTCAAGACCTTTGGTTCTGGGGCTGAATGTGTGAACTCGTTGATTGAGTTTTGATGATACCAAGTATTTATGCAAATTTTTGTGGATATTTTACTTGTTGCTTAATGGGAAGAAGTGTTTGTTTTTTCTGTT

mRNA sequence

ATAAAACCTAACCCTAACAGCGCTGATCGTTTCTCCTTGCCGCACATAGTTCTGCATCCAAGTTCTTCCTTCAAGCTCTCAGGAATGGAGTCACAGATCAAGCATGCTGTGGTGGTGAAGGTAATGGGTAGAACTGGATCGCGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAACCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTGCTCGAGTCCGAGAGGGAAGCCAGAAGGTTGCGTTGATGCGGGAGAATTGCTGTTGCTTCCATCATCTTTCCTCCTTATAAGTTTTAATTTTAGTGACTAGTGTGTTCAAGACCTTTGGTTCTGGGGCTGAATGTGTGAACTCGTTGATTGAGTTTTGATGATACCAAGTATTTATGCAAATTTTTGTGGATATTTTACTTGTTGCTTAATGGGAAGAAGTGTTTGTTTTTTCTGTT

Coding sequence (CDS)

ATGGAGTCACAGATCAAGCATGCTGTGGTGGTGAAGGTAATGGGTAGAACTGGATCGCGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAACCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTGCTCGAGTCCGAGAGGGAAGCCAGAAGGTTGCGTTGA

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Homology
[Close]
BLAST of Sed0010711 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115

Query: 61  ARRLR 66
           ARRLR
Sbjct: 116 ARRLR 120

[Close]
BLAST of Sed0010711 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 45  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 104

Query: 61  ARRLR 66
           ARRLR
Sbjct: 105 ARRLR 109

[Close]
BLAST of Sed0010711 vs. NCBI nr
Match: KGN63808.2 (hypothetical protein Csa_014218 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. NCBI nr
Match: XP_008453374.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_031744318.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_038881044.1 40S ribosomal protein S28-1 [Benincasa hispida] >XP_038881063.1 40S ribosomal protein S28-1 [Benincasa hispida] >XP_038898372.1 40S ribosomal protein S28-1 [Benincasa hispida] >KAA0056126.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >KAG7027624.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0058054.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >KAA0058055.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >TYK02520.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 35 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 94

Query: 61 ARRLR 66
          ARRLR
Sbjct: 95 ARRLR 99

[Close]
BLAST of Sed0010711 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.4e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Sed0010711 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Sed0010711 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]
BLAST of Sed0010711 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]
BLAST of Sed0010711 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. ExPASy TrEMBL
Match: A0A6J1E1S7 (40S ribosomal protein S28-1 OS=Momordica charantia OX=3673 GN=LOC111025637 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. ExPASy TrEMBL
Match: A0A6J1EZU9 (40S ribosomal protein S28-1 OS=Cucurbita moschata OX=3662 GN=LOC111440874 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Sed0010711 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 7.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Sed0010711 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 7.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Sed0010711 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

The following BLAST results are available for this feature:
BLAST of Sed0010711 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134697.15.5e-26100.0040S ribosomal protein S28-1-like [Momordica charantia][more]
XP_022922061.15.5e-26100.0040S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata][more]
KGN63808.25.5e-26100.00hypothetical protein Csa_014218 [Cucumis sativus][more]
XP_008453374.15.5e-26100.00PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED:... [more]
KAG7023246.15.5e-26100.0040S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Sed0010711 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P463026.4e-2590.7740S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
Q9SR731.1e-2492.3140S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
P347894.1e-2489.2340S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
Q6PBK38.0e-2080.3340S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
Q90YP38.0e-2080.3340S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of Sed0010711 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HTG72.7e-26100.0040S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=... [more]
A0A0A0LPR22.7e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
A0A1S3CD612.7e-26100.0040S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1[more]
A0A6J1E1S72.7e-26100.0040S ribosomal protein S28-1 OS=Momordica charantia OX=3673 GN=LOC111025637 PE=3 ... [more]
A0A6J1EZU92.7e-26100.0040S ribosomal protein S28-1 OS=Cucurbita moschata OX=3662 GN=LOC111440874 PE=3 S... [more]
BLAST of Sed0010711 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10090.17.7e-2692.31Nucleic acid-binding, OB-fold-like protein [more]
AT5G03850.17.7e-2692.31Nucleic acid-binding, OB-fold-like protein [more]
AT5G64140.12.9e-2589.23ribosomal protein S28 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..65
e-value: 8.8E-37
score: 126.8
NoneNo IPR availablePANTHERPTHR10769:SF340S RIBOSOMAL PROTEIN S28coord: 1..65
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..64
e-value: 1.1E-32
score: 111.8
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..65
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..65
score: 21.430906
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 6..65
e-value: 3.99393E-30
score: 98.4763
IPR028626Ribosomal protein S28e conserved sitePROSITEPS00961RIBOSOMAL_S28Ecoord: 56..64
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010711.1Sed0010711.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030490 maturation of SSU-rRNA
biological_process GO:0006508 proteolysis
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003735 structural constituent of ribosome