Sed0010672 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAACAACATATCCTTCTTCTCTCTCTTCCTCTCTCTCTCTCTCTCTAAAAAACCAAACAAATACAAAGAGATTCACCAAAACAATCTTCAAAATTACAGACCCAAAAATGGAAAACAACCTCCCAGTAATCACCAAAAAGGTTTGGAATCTGGTTCGTGTTGCTTATTTCCTCATCCGCAAAGGCTTCTCCAAGAGCAAGCTCATGCTCGACCTTAACCTCCTCACCAAACGCGGCAAGATCGCCGGAAAAGCCCTCACCAACCTCATGTTCCACCTCCACCACCACCACCACCACCACGGCGGCGCGTCCCCCTCCTCCGCCGCCGCCGCCATCTCCCCCCATCAACCCCCCTTCCCCCTCGCCCCCGACGACTACGAGTTCAGCTGCACAACCACCCCCGCCTTCCCCGACCTCTTCCACGTCAGCAAGCGCCGCCGCAACCACAACCACCACTCCTTCTTCGCCTGTGCCCACGCGCCTCACACGCTCGACGACGACACCACCGCCGTCAATGCCGTCAAGGCCGCTATCGAGCTCCTCAACAACCACGGCGACGCGTCGTCCCCGTCGCCGGTCTCCGCCTCCCCGGCTCTCCCTGGATTTGGCCGGACTCCGAGAAAAGTCCGTCAGCTCAGGGTGACGGACTCGCCGTTTCCGTTACAAGATGCTAACGCCGATCCGTTAGTGGACCAGGCGGCGGATGAATTTATCAGCAGGTTTTACAACCAGCTCCGCCTCCAAAAAACGGCCGACGAGAACTGAAATGCGGCGGAGATGACCGGCTACCGGCGGTCGGGATATGAAAAGTAGTTATATATATATATAGTTTTTTTTTGTTACGTGGCATTGGTGTTTTTGTCGTGACTTGAGATTAACTACACAAGCGCGTATTAGTTTTGCAACGGAAATGGAAATAATGACTCGAGAGAGAAGAGTTTGTTTGATTGTTGTTCAAACGAACGTTTTATCTATTTTCTGAGTGTATTTTGCTGTCATAAAAAAAAATTGAAATGTTAGTTTGTTTTCCATGTTATTATAATTGTTTTTTTGGAAA AAAAACAACATATCCTTCTTCTCTCTCTTCCTCTCTCTCTCTCTCTCTAAAAAACCAAACAAATACAAAGAGATTCACCAAAACAATCTTCAAAATTACAGACCCAAAAATGGAAAACAACCTCCCAGTAATCACCAAAAAGGTTTGGAATCTGGTTCGTGTTGCTTATTTCCTCATCCGCAAAGGCTTCTCCAAGAGCAAGCTCATGCTCGACCTTAACCTCCTCACCAAACGCGGCAAGATCGCCGGAAAAGCCCTCACCAACCTCATGTTCCACCTCCACCACCACCACCACCACCACGGCGGCGCGTCCCCCTCCTCCGCCGCCGCCGCCATCTCCCCCCATCAACCCCCCTTCCCCCTCGCCCCCGACGACTACGAGTTCAGCTGCACAACCACCCCCGCCTTCCCCGACCTCTTCCACGTCAGCAAGCGCCGCCGCAACCACAACCACCACTCCTTCTTCGCCTGTGCCCACGCGCCTCACACGCTCGACGACGACACCACCGCCGTCAATGCCGTCAAGGCCGCTATCGAGCTCCTCAACAACCACGGCGACGCGTCGTCCCCGTCGCCGGTCTCCGCCTCCCCGGCTCTCCCTGGATTTGGCCGGACTCCGAGAAAAGTCCGTCAGCTCAGGGTGACGGACTCGCCGTTTCCGTTACAAGATGCTAACGCCGATCCGTTAGTGGACCAGGCGGCGGATGAATTTATCAGCAGGTTTTACAACCAGCTCCGCCTCCAAAAAACGGCCGACGAGAACTGAAATGCGGCGGAGATGACCGGCTACCGGCGGTCGGGATATGAAAAGTAGTTATATATATATATAGTTTTTTTTTGTTACGTGGCATTGGTGTTTTTGTCGTGACTTGAGATTAACTACACAAGCGCGTATTAGTTTTGCAACGGAAATGGAAATAATGACTCGAGAGAGAAGAGTTTGTTTGATTGTTGTTCAAACGAACGTTTTATCTATTTTCTGAGTGTATTTTGCTGTCATAAAAAAAAATTGAAATGTTAGTTTGTTTTCCATGTTATTATAATTGTTTTTTTGGAAA ATGGAAAACAACCTCCCAGTAATCACCAAAAAGGTTTGGAATCTGGTTCGTGTTGCTTATTTCCTCATCCGCAAAGGCTTCTCCAAGAGCAAGCTCATGCTCGACCTTAACCTCCTCACCAAACGCGGCAAGATCGCCGGAAAAGCCCTCACCAACCTCATGTTCCACCTCCACCACCACCACCACCACCACGGCGGCGCGTCCCCCTCCTCCGCCGCCGCCGCCATCTCCCCCCATCAACCCCCCTTCCCCCTCGCCCCCGACGACTACGAGTTCAGCTGCACAACCACCCCCGCCTTCCCCGACCTCTTCCACGTCAGCAAGCGCCGCCGCAACCACAACCACCACTCCTTCTTCGCCTGTGCCCACGCGCCTCACACGCTCGACGACGACACCACCGCCGTCAATGCCGTCAAGGCCGCTATCGAGCTCCTCAACAACCACGGCGACGCGTCGTCCCCGTCGCCGGTCTCCGCCTCCCCGGCTCTCCCTGGATTTGGCCGGACTCCGAGAAAAGTCCGTCAGCTCAGGGTGACGGACTCGCCGTTTCCGTTACAAGATGCTAACGCCGATCCGTTAGTGGACCAGGCGGCGGATGAATTTATCAGCAGGTTTTACAACCAGCTCCGCCTCCAAAAAACGGCCGACGAGAACTGA MENNLPVITKKVWNLVRVAYFLIRKGFSKSKLMLDLNLLTKRGKIAGKALTNLMFHLHHHHHHHGGASPSSAAAAISPHQPPFPLAPDDYEFSCTTTPAFPDLFHVSKRRRNHNHHSFFACAHAPHTLDDDTTAVNAVKAAIELLNNHGDASSPSPVSASPALPGFGRTPRKVRQLRVTDSPFPLQDANADPLVDQAADEFISRFYNQLRLQKTADEN Homology
BLAST of Sed0010672 vs. NCBI nr
Match: XP_023000392.1 (uncharacterized protein LOC111494650 [Cucurbita maxima]) HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84 Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 0
BLAST of Sed0010672 vs. NCBI nr
Match: XP_023514516.1 (uncharacterized protein LOC111778773 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 313.5 bits (802), Expect = 1.4e-81 Identity = 157/211 (74.41%), Postives = 178/211 (84.36%), Query Frame = 0
BLAST of Sed0010672 vs. NCBI nr
Match: XP_022964083.1 (uncharacterized protein LOC111464220 [Cucurbita moschata]) HSP 1 Score: 306.6 bits (784), Expect = 1.7e-79 Identity = 156/211 (73.93%), Postives = 176/211 (83.41%), Query Frame = 0
BLAST of Sed0010672 vs. NCBI nr
Match: KAG6593486.1 (hypothetical protein SDJN03_12962, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 270.4 bits (690), Expect = 1.4e-68 Identity = 136/186 (73.12%), Postives = 155/186 (83.33%), Query Frame = 0
BLAST of Sed0010672 vs. NCBI nr
Match: XP_022953927.1 (uncharacterized protein LOC111456334 [Cucurbita moschata]) HSP 1 Score: 269.6 bits (688), Expect = 2.3e-68 Identity = 149/223 (66.82%), Postives = 169/223 (75.78%), Query Frame = 0
BLAST of Sed0010672 vs. ExPASy TrEMBL
Match: A0A6J1KDI8 (uncharacterized protein LOC111494650 OS=Cucurbita maxima OX=3661 GN=LOC111494650 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 8.5e-85 Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 0
BLAST of Sed0010672 vs. ExPASy TrEMBL
Match: A0A6J1HJS6 (uncharacterized protein LOC111464220 OS=Cucurbita moschata OX=3662 GN=LOC111464220 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 8.3e-80 Identity = 156/211 (73.93%), Postives = 176/211 (83.41%), Query Frame = 0
BLAST of Sed0010672 vs. ExPASy TrEMBL
Match: A0A6J1GPL9 (uncharacterized protein LOC111456334 OS=Cucurbita moschata OX=3662 GN=LOC111456334 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 1.1e-68 Identity = 149/223 (66.82%), Postives = 169/223 (75.78%), Query Frame = 0
BLAST of Sed0010672 vs. ExPASy TrEMBL
Match: A0A6J1JMV1 (uncharacterized protein LOC111488328 OS=Cucurbita maxima OX=3661 GN=LOC111488328 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 3.1e-66 Identity = 145/222 (65.32%), Postives = 165/222 (74.32%), Query Frame = 0
BLAST of Sed0010672 vs. ExPASy TrEMBL
Match: A0A1S4E3M3 (actin-related protein 8-like OS=Cucumis melo OX=3656 GN=LOC103500787 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 7.3e-60 Identity = 130/219 (59.36%), Postives = 160/219 (73.06%), Query Frame = 0
BLAST of Sed0010672 vs. TAIR 10
Match: AT1G52140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 147.1 bits (370), Expect = 1.6e-35 Identity = 97/220 (44.09%), Postives = 126/220 (57.27%), Query Frame = 0
BLAST of Sed0010672 vs. TAIR 10
Match: AT3G16330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 140.2 bits (352), Expect = 2.0e-33 Identity = 95/229 (41.48%), Postives = 126/229 (55.02%), Query Frame = 0
BLAST of Sed0010672 vs. TAIR 10
Match: AT4G29110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 92.4 bits (228), Expect = 4.7e-19 Identity = 74/220 (33.64%), Postives = 107/220 (48.64%), Query Frame = 0
BLAST of Sed0010672 vs. TAIR 10
Match: AT4G32860.1 (unknown protein; Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 5.1e-05 Identity = 66/222 (29.73%), Postives = 93/222 (41.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|