Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTGTTGTGGAGGAGAAATGGATTGCCCCTCCTAGAGGTTGTTGGAAGCTGAATACTGATGCTTCCTTTAATTTTTCGTCTAGTATAGGGGGCATTGGCTGGATTGTTCGTGACGGGAGAGGTGTTCCAAAGATTGTTGGGTGGAAGGCTAGGCACAAGAGTTCTTCTGTCAAGGTCCTTGAAGGCCTGGCTATTCGCGATGCTCTAAGCTTTATCCACGAGGCCGATATTCAAATGCTTCCCCCGATTCTTGTTGAATCCGACGCTTTAGAGGTGATCAAGGCCATTTCGGAGGATTCTTTAGATTGCTCTGAGTTCAACAATATCATTATTGATATTAGATGGTTTATGGCAGCGCTTGGGATGGTTTCTGTGTCTCATTGTGGTAGGCGTTGTAATAGGGCGGCTGATTTGCTTGCCAAGTTAGATGGTTCTGATTCTGTTTGTCATATTTATCCTCCCTATCCGGTGGAAGATTGTATTTCCTTTTGGAAGGGGATTCTTCCCCCTGTTGTAGGCTCCATGGTGGAGATGGATTGTGTTGGTTTGTTTGGCTTGGGTTGA
mRNA sequence
ATGAAGATTGTTGTGGAGGAGAAATGGATTGCCCCTCCTAGAGGTTGTTGGAAGCTGAATACTGATGCTTCCTTTAATTTTTCGTCTAGTATAGGGGGCATTGGCTGGATTGTTCGTGACGGGAGAGGTGTTCCAAAGATTGTTGGGTGGAAGGCTAGGCACAAGAGTTCTTCTGTCAAGGTCCTTGAAGGCCTGGCTATTCGCGATGCTCTAAGCTTTATCCACGAGGCCGATATTCAAATGCTTCCCCCGATTCTTGTTGAATCCGACGCTTTAGAGGTGATCAAGGCCATTTCGGAGGATTCTTTAGATTGCTCTGAGTTCAACAATATCATTATTGATATTAGATGGTTTATGGCAGCGCTTGGGATGGTTTCTGTGTCTCATTGTGGTAGGCGTTGTAATAGGGCGGCTGATTTGCTTGCCAAGTTAGATGGTTCTGATTCTGTTTGTCATATTTATCCTCCCTATCCGGTGGAAGATTGTATTTCCTTTTGGAAGGGGATTCTTCCCCCTGTTGTAGGCTCCATGGTGGAGATGGATTGTGTTGGTTTGTTTGGCTTGGGTTGA
Coding sequence (CDS)
ATGAAGATTGTTGTGGAGGAGAAATGGATTGCCCCTCCTAGAGGTTGTTGGAAGCTGAATACTGATGCTTCCTTTAATTTTTCGTCTAGTATAGGGGGCATTGGCTGGATTGTTCGTGACGGGAGAGGTGTTCCAAAGATTGTTGGGTGGAAGGCTAGGCACAAGAGTTCTTCTGTCAAGGTCCTTGAAGGCCTGGCTATTCGCGATGCTCTAAGCTTTATCCACGAGGCCGATATTCAAATGCTTCCCCCGATTCTTGTTGAATCCGACGCTTTAGAGGTGATCAAGGCCATTTCGGAGGATTCTTTAGATTGCTCTGAGTTCAACAATATCATTATTGATATTAGATGGTTTATGGCAGCGCTTGGGATGGTTTCTGTGTCTCATTGTGGTAGGCGTTGTAATAGGGCGGCTGATTTGCTTGCCAAGTTAGATGGTTCTGATTCTGTTTGTCATATTTATCCTCCCTATCCGGTGGAAGATTGTATTTCCTTTTGGAAGGGGATTCTTCCCCCTGTTGTAGGCTCCATGGTGGAGATGGATTGTGTTGGTTTGTTTGGCTTGGGTTGA
Protein sequence
MKIVVEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMDCVGLFGLG
Homology
BLAST of Sed0010617 vs. NCBI nr
Match:
XP_042983291.1 (uncharacterized protein LOC122312694 [Carya illinoinensis])
HSP 1 Score: 84.7 bits (208), Expect = 9.2e-13
Identity = 57/174 (32.76%), Postives = 84/174 (48.28%), Query Frame = 0
Query: 8 KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAI 67
KW PP G +KLN D +F+ S S+ GIG IVRD +G + K + V +E LAI
Sbjct: 82 KWELPPPGVFKLNVDGAFSSSGSVAGIGAIVRDSKGEVIMSAAKKECSAMIVVEVEALAI 141
Query: 68 RDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVSV 127
L F I L ++ESD+ V+ ++ + F N+I + + M+ + V
Sbjct: 142 IRGLQFCIHLGISNL---VIESDSQLVVTEFNQQGPSKATFGNVIREAKDLMSRFSICDV 201
Query: 128 SHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD 182
H R CN AA LLAK S V++ +S W G P V+ +++ D
Sbjct: 202 QHTYRNCNVAAHLLAKYGLS-----------VQN-VSLWWGAYPGVISNVLWYD 240
BLAST of Sed0010617 vs. NCBI nr
Match:
XP_030509282.1 (uncharacterized protein LOC115723963 [Cannabis sativa])
HSP 1 Score: 84.7 bits (208), Expect = 9.2e-13
Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 0
Query: 1 MKIVVEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVK 60
++ ++ W PP G KLN DA + +++ G+G I+RD G+ K S
Sbjct: 77 LESAIKVPWKPPPSGVIKLNVDAVVDRNTNTTGLGAILRDHSGLVIAAFSKKLLGSFDPH 136
Query: 61 VLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMA 120
+E LA+ + F Q L L+E+DAL V AI ++ S FN+II+D+ ++
Sbjct: 137 EMEALALFHGVHFALNYQFQHL---LIETDALRVKNAICSPTVAFSVFNDIIMDVSSLLS 196
Query: 121 ALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVE 180
+V+VSH R N AAD LAK G D EDC FW +PP + S++
Sbjct: 197 FFPIVNVSHVKRTANMAADGLAKFALGVD-----------EDC--FWSDCIPPPINSVIV 242
Query: 181 MD 182
D
Sbjct: 257 ND 242
BLAST of Sed0010617 vs. NCBI nr
Match:
XP_010676027.1 (PREDICTED: uncharacterized protein LOC104891937 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 56/167 (33.53%), Postives = 86/167 (51.50%), Query Frame = 0
Query: 9 WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIR 68
W PP+ +KLN D S SS+ +G+++R+ G + G K+ S+SV E A++
Sbjct: 1098 WSPPPQNYFKLNFDGS-KLSSNSTALGFVIRNVAGEAMVAGSKSLGYSTSVLQAEAWALK 1157
Query: 69 DALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVSVS 128
+ + +I L ++E D L VI AI + E NNI++DIR + G V
Sbjct: 1158 EGILAALSFNISNL---IIEGDNLAVINAIRKIWKIPWEINNIVLDIRANLPLFGSFQVQ 1217
Query: 129 HCGRRCNRAADLLA-KLDGSDSVCHIYPPYPVEDCISFWKGIL--PP 173
HC R N+ ADLLA + G D + YPP+ ++ + K +L PP
Sbjct: 1218 HCFREANKVADLLANRGHGLDGMQLFYPPFDIDLSMCVRKDVLGWPP 1260
BLAST of Sed0010617 vs. NCBI nr
Match:
XP_018821989.1 (uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical protein F2P56_024162 [Juglans regia])
HSP 1 Score: 82.4 bits (202), Expect = 4.5e-12
Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 0
Query: 7 EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLA 66
++W APP G +KLN D +F+ S+ GIG ++RD +G + S +V LEGLA
Sbjct: 612 DRWKAPPPGTFKLNVDGAFSQDGSVTGIGAVLRDSKGEVLMAAAIRERASLNVYELEGLA 671
Query: 67 IRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVS 126
I L I L +ESD+L V+ + + N+I ++R M
Sbjct: 672 ILRGLQLCLHLGIYHLS---IESDSLLVVNEFDRNGQSMATMGNVISEVRKLMFCFQTCE 731
Query: 127 VSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD 182
++H R CN LAKL S S IS W G P V+ + + D
Sbjct: 732 LTHVNRSCNIVTHTLAKLGLSVSE------------ISLWWGSYPGVITNFLWYD 771
BLAST of Sed0010617 vs. NCBI nr
Match:
XP_030940021.1 (uncharacterized protein LOC115964936 [Quercus lobata])
HSP 1 Score: 81.6 bits (200), Expect = 7.8e-12
Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = 0
Query: 8 KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAI 67
KW APP G +K+N D + + IG I+RD +G P K SV++ E LA+
Sbjct: 175 KWSAPPAGFFKINVDGAASDDGKPSSIGVIIRDCQGSPTAASSKVLSSPFSVEITEALAL 234
Query: 68 RDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVSV 127
++ + E L ++ E DAL +I+A++E ++ S+F +II +IR +
Sbjct: 235 QEGVLLASEMG---LSKVIFEGDALPIIQAVNEGNVG-SDFGHIIQNIRDLSLSFSWCLF 294
Query: 128 SHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMV 179
H R NR A LAK V + WKG++P VV ++
Sbjct: 295 QHLNRNGNRVAHDLAKEARRSGVSQV------------WKGVVPSVVEILI 329
BLAST of Sed0010617 vs. ExPASy TrEMBL
Match:
A0A803QC75 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 54/167 (32.34%), Postives = 84/167 (50.30%), Query Frame = 0
Query: 7 EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLA 66
++W P +KLN DA+ + + GIG I+RD G K + S +E +A
Sbjct: 1540 QQWRPPEANSYKLNVDAAIDVHQKVIGIGAIIRDSNGNVVAAYSKQQPGHFSSHEMEAIA 1599
Query: 67 IRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVS 126
+ +L+++ + Q LP LVESDAL V+ A+ S F+++I+D+ ++ L V+
Sbjct: 1600 LFQSLNWVIQ---QQLPISLVESDALMVVNALRAPFNSISSFHDLIVDVLCLLSFLPDVT 1659
Query: 127 VSHCGRRCNRAADLLAKLD-GSDSVCH--------IYPPYPVEDCIS 165
++H R N AA LAK G D C IY VE+C+S
Sbjct: 1660 ITHVKREANMAAHCLAKFALGVDEACSWFEEIPPPIYSVIRVENCLS 1703
BLAST of Sed0010617 vs. ExPASy TrEMBL
Match:
A0A803PS58 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 55/177 (31.07%), Postives = 87/177 (49.15%), Query Frame = 0
Query: 9 WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRG------VPKIVGWKARHKSSSVKVL 68
W PP G KLN DA+ + S I G+G ++R G ++G A H+ +
Sbjct: 1110 WTPPPPGLLKLNVDAAVDSSRKITGVGALIRRTDGSVAAAFSKPVLGCFASHE------M 1169
Query: 69 EGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAAL 128
E +A+ +LS+ + LP L+E+DAL+V+ A+ + S S F ++++DI ++
Sbjct: 1170 EAIAMFHSLSWALQLH---LPVTLIETDALKVVNALCKSSSAISSFQDLVVDISSLLSFF 1229
Query: 129 GMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMV 179
V+VSH R N AAD LAK G D C +W +PP + S++
Sbjct: 1230 PNVNVSHVKRAANVAADGLAKFTLGVDEAC-------------YWTDCIPPPINSVI 1264
BLAST of Sed0010617 vs. ExPASy TrEMBL
Match:
A0A803PJK4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 0
Query: 5 VEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEG 64
V KW+ PP G KLNTDA+ + + I G G I+RD G K +V+E
Sbjct: 1676 VAPKWLNPPSGRLKLNTDAAVDNVNRISGFGAILRDSDGQVVAAMSKPHPGCFKPEVMEA 1735
Query: 65 LAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGM 124
LA+R +L ++ + LP +E+D+L V+K + SL+ S+F++++ DI M+
Sbjct: 1736 LALRYSLQWLQSMN---LPIHYIETDSLLVVKGLQARSLNVSDFHSVLNDITILMSNFPG 1795
Query: 125 VSVSHCGRRCNRAADLLAK 144
V +SH R N A +LAK
Sbjct: 1796 VQISHVFRSANTFAHILAK 1811
BLAST of Sed0010617 vs. ExPASy TrEMBL
Match:
A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 0
Query: 9 WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIR 68
W PP G K+N DA+++ GG+GW++RD G+ G + SS ++E LAIR
Sbjct: 796 WCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIR 855
Query: 69 DALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVSVS 128
ALS E L I+VESD+ + I ++ + S+ I+ DIR +A+L VS
Sbjct: 856 HALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFV 915
Query: 129 HCGRRCNRAADLLAKLDGSDSVCHIY 155
R CN+AA +A H++
Sbjct: 916 FAPRSCNQAAHSVAGFVSKQGGNHVW 938
BLAST of Sed0010617 vs. ExPASy TrEMBL
Match:
A0A803QG78 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 8.4e-12
Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 0
Query: 9 WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGV------PKIVGWKARHKSSSVKVL 68
W PP KLN DA+ + S+ + G+G + RD G+ K++G H+ ++ +
Sbjct: 1160 WKTPPSCVVKLNIDAAVDRSTKVTGLGAVFRDSMGMVVAAFSKKLLGSFEPHEMEALALF 1219
Query: 69 EGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAAL 128
G +H A P + +E+DAL V A+ + CS FN+II+D+ ++
Sbjct: 1220 HG---------VHYALHFQFPQLQIETDALRVKNALYIPTAACSTFNDIIMDVSSLLSFF 1279
Query: 129 GMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD 182
V+VSH R N AA LAK G D EDC FW +PP + S++ D
Sbjct: 1280 PNVNVSHVKRTANTAAHGLAKFALGVD-----------EDC--FWSDCIPPPINSVIVND 1317
BLAST of Sed0010617 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 37/136 (27.21%), Postives = 65/136 (47.79%), Query Frame = 0
Query: 8 KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAI 67
+W PP K NTDA++N + GIGW++R+ +G K +G +A K SV E A+
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAM 478
Query: 68 RDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVSV 127
R A+ + ++ ESD+ +I+ ++ D + I D++ ++ V
Sbjct: 479 RWAVLSLSRFQYNY---VIFESDSQVLIEILNNDEI-WPSLKPTIQDLQRLLSQFTEVKF 538
Query: 128 SHCGRRCNRAADLLAK 144
R N A+ +A+
Sbjct: 539 VFIPREGNTLAERVAR 550
BLAST of Sed0010617 vs. TAIR 10
Match:
AT2G04420.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 48.5 bits (114), Expect = 6.8e-06
Identity = 39/148 (26.35%), Postives = 59/148 (39.86%), Query Frame = 0
Query: 7 EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLA 66
+KW PP G K N D SFN+ + GW++RD +G K ++ E A
Sbjct: 61 QKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQA 120
Query: 67 IRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNNIIIDIRWFMAALGMVS 126
+ A+ Q ++ E D+ +V + ++ + FN I W V
Sbjct: 121 LVMAMQHTWS---QGYRKVIFEGDSKQVEELLNRKQMHFGAFNWIREAWSW-SKRFEEVI 180
Query: 127 VSHCGRRCNRAADLLAKLDGSDSVCHIY 155
S R N+ AD+LAK IY
Sbjct: 181 FSWTPRTNNQPADMLAKSHLPQDTSFIY 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_042983291.1 | 9.2e-13 | 32.76 | uncharacterized protein LOC122312694 [Carya illinoinensis] | [more] |
XP_030509282.1 | 9.2e-13 | 32.97 | uncharacterized protein LOC115723963 [Cannabis sativa] | [more] |
XP_010676027.1 | 1.6e-12 | 33.53 | PREDICTED: uncharacterized protein LOC104891937 [Beta vulgaris subsp. vulgaris] | [more] |
XP_018821989.1 | 4.5e-12 | 30.86 | uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical ... | [more] |
XP_030940021.1 | 7.8e-12 | 30.41 | uncharacterized protein LOC115964936 [Quercus lobata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803QC75 | 1.3e-12 | 32.34 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803PS58 | 3.8e-12 | 31.07 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803PJK4 | 3.8e-12 | 35.25 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A6J5WPU6 | 6.4e-12 | 34.25 | Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... | [more] |
A0A803QG78 | 8.4e-12 | 31.11 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G29090.1 | 1.0e-06 | 27.21 | Ribonuclease H-like superfamily protein | [more] |
AT2G04420.1 | 6.8e-06 | 26.35 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |