Sed0010602 (gene) Chayote v1

Overview


Name	Sed0010602
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG05: 40510925 .. 40512268 (-)
RNA-Seq Expression	Sed0010602
Synteny	Sed0010602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATTGAGTCGAACTTTTCGGAGTTTTAGTTTTGTTTGTTTCAGTCAGATATGAGACGATGACTTCCGGTACGGCGTCGTTTTGGTGTTATCGGTGCAACCGCACCGTTCGTGTTTGGGTTCAAGACACTATTACTTGCCCTACCTGTGACGGCGGATTCCTCGAAGCAATCGAAGCCGCCGCTTCTCTACCGCCGGCGAATCTTCACCATCGATCCTCGCCGTCCAGGATTCCATCGTTGGATCAAGATACTCTTCAGTCTCCTGGATTTCGCCTCCGCCAGAGTCGCCGGAGACTTGGGGATCGGTCCACTTTTAACCCTGTTGTTGTTCTTCGTGGTTCTCCCGACGGCGGCGATGTAGGCGGCGGCGGGGAGAGGAATAACTTCGATATTTACTACGACGACGGGGCTGGGTCTGGTCTTCGGCCGGTCCCGGCGACGATGTCGGAGTTTCTGATGGGGACTGGGTTCGATCGGTTGCTGGAACAGTTGGCTCAAATGGAGATCAACGGGCTTGGCACGTCTGAAAACCCGCCGGCGTCGAAAGCCGCGGTGGAGTCAATGCCCACGATTGAGATTTTGAAAACTCATGTAGATTCAGACTCGCACTGCGCCGTTTGTAAAGAGGCGTTTGAAATCGGAACCGATGCTCGAGAAATGCCGTGTAAGCACATATATCACTCCGATTGCATAATCCCTTGGCTTTCGATGAGAAATTCCTGCCCGGTTTGCCGAGACGAGCTTCCGTCGGAGCGCGTAGCTCCGGCCGCCGGAGTTTCAGATCGGGTTTTCGATGATGAAACCACCGTCGGGTTAACGATATGGAGGCTCCCCGGCGGTGGGTTCGCCGTGGGAAGATTAGCCGGCGAGAGAGACCCACCGGCGGTGTACACCGAAATGGACGGCGCATTCAATGGAAACGGAGCCCCGAGAAGGGTCTCGTGGGCTTCGAGAAGAAGCAGGGGAAGAGAGAGCAGAGGAATTGGGCAAAGATTTCGCAACATGTTTTCGTTTTTTGGAAGACTGAGATCTTCGAATTCATCTTCTTCCTTAGCTTCGAATGAATCAGAATCTGTTAGCAGAAGCCATAGCCATTCGAGTTCTTCAGTTTTTGGTAGATATTTGCGAAGGCGCAACAGAACTTGGGTGTTGGAGAATCAGAATGAAAATGGCCGATGGTGATTCTTTTTCAACTCTACAATTACAATTACTTTGCCTTATGATCTATAAATTTTTATCTGTTCATTACATTTATTGAACAATACCCTTACGATTCAAATTAGATTCTGTATATACATCTTTTGACTTCGCTAAACAATGAATGCCTTCTCTTTAGCTTGA

mRNA sequence

CTTCATTGAGTCGAACTTTTCGGAGTTTTAGTTTTGTTTGTTTCAGTCAGATATGAGACGATGACTTCCGGTACGGCGTCGTTTTGGTGTTATCGGTGCAACCGCACCGTTCGTGTTTGGGTTCAAGACACTATTACTTGCCCTACCTGTGACGGCGGATTCCTCGAAGCAATCGAAGCCGCCGCTTCTCTACCGCCGGCGAATCTTCACCATCGATCCTCGCCGTCCAGGATTCCATCGTTGGATCAAGATACTCTTCAGTCTCCTGGATTTCGCCTCCGCCAGAGTCGCCGGAGACTTGGGGATCGGTCCACTTTTAACCCTGTTGTTGTTCTTCGTGGTTCTCCCGACGGCGGCGATGTAGGCGGCGGCGGGGAGAGGAATAACTTCGATATTTACTACGACGACGGGGCTGGGTCTGGTCTTCGGCCGGTCCCGGCGACGATGTCGGAGTTTCTGATGGGGACTGGGTTCGATCGGTTGCTGGAACAGTTGGCTCAAATGGAGATCAACGGGCTTGGCACGTCTGAAAACCCGCCGGCGTCGAAAGCCGCGGTGGAGTCAATGCCCACGATTGAGATTTTGAAAACTCATGTAGATTCAGACTCGCACTGCGCCGTTTGTAAAGAGGCGTTTGAAATCGGAACCGATGCTCGAGAAATGCCGTGTAAGCACATATATCACTCCGATTGCATAATCCCTTGGCTTTCGATGAGAAATTCCTGCCCGGTTTGCCGAGACGAGCTTCCGTCGGAGCGCGTAGCTCCGGCCGCCGGAGTTTCAGATCGGGTTTTCGATGATGAAACCACCGTCGGGTTAACGATATGGAGGCTCCCCGGCGGTGGGTTCGCCGTGGGAAGATTAGCCGGCGAGAGAGACCCACCGGCGGTGTACACCGAAATGGACGGCGCATTCAATGGAAACGGAGCCCCGAGAAGGGTCTCGTGGGCTTCGAGAAGAAGCAGGGGAAGAGAGAGCAGAGGAATTGGGCAAAGATTTCGCAACATGTTTTCGTTTTTTGGAAGACTGAGATCTTCGAATTCATCTTCTTCCTTAGCTTCGAATGAATCAGAATCTGTTAGCAGAAGCCATAGCCATTCGAGTTCTTCAGTTTTTGGTAGATATTTGCGAAGGCGCAACAGAACTTGGGTGTTGGAGAATCAGAATGAAAATGGCCGATGGTGATTCTTTTTCAACTCTACAATTACAATTACTTTGCCTTATGATCTATAAATTTTTATCTGTTCATTACATTTATTGAACAATACCCTTACGATTCAAATTAGATTCTGTATATACATCTTTTGACTTCGCTAAACAATGAATGCCTTCTCTTTAGCTTGA

Coding sequence (CDS)

ATGACTTCCGGTACGGCGTCGTTTTGGTGTTATCGGTGCAACCGCACCGTTCGTGTTTGGGTTCAAGACACTATTACTTGCCCTACCTGTGACGGCGGATTCCTCGAAGCAATCGAAGCCGCCGCTTCTCTACCGCCGGCGAATCTTCACCATCGATCCTCGCCGTCCAGGATTCCATCGTTGGATCAAGATACTCTTCAGTCTCCTGGATTTCGCCTCCGCCAGAGTCGCCGGAGACTTGGGGATCGGTCCACTTTTAACCCTGTTGTTGTTCTTCGTGGTTCTCCCGACGGCGGCGATGTAGGCGGCGGCGGGGAGAGGAATAACTTCGATATTTACTACGACGACGGGGCTGGGTCTGGTCTTCGGCCGGTCCCGGCGACGATGTCGGAGTTTCTGATGGGGACTGGGTTCGATCGGTTGCTGGAACAGTTGGCTCAAATGGAGATCAACGGGCTTGGCACGTCTGAAAACCCGCCGGCGTCGAAAGCCGCGGTGGAGTCAATGCCCACGATTGAGATTTTGAAAACTCATGTAGATTCAGACTCGCACTGCGCCGTTTGTAAAGAGGCGTTTGAAATCGGAACCGATGCTCGAGAAATGCCGTGTAAGCACATATATCACTCCGATTGCATAATCCCTTGGCTTTCGATGAGAAATTCCTGCCCGGTTTGCCGAGACGAGCTTCCGTCGGAGCGCGTAGCTCCGGCCGCCGGAGTTTCAGATCGGGTTTTCGATGATGAAACCACCGTCGGGTTAACGATATGGAGGCTCCCCGGCGGTGGGTTCGCCGTGGGAAGATTAGCCGGCGAGAGAGACCCACCGGCGGTGTACACCGAAATGGACGGCGCATTCAATGGAAACGGAGCCCCGAGAAGGGTCTCGTGGGCTTCGAGAAGAAGCAGGGGAAGAGAGAGCAGAGGAATTGGGCAAAGATTTCGCAACATGTTTTCGTTTTTTGGAAGACTGAGATCTTCGAATTCATCTTCTTCCTTAGCTTCGAATGAATCAGAATCTGTTAGCAGAAGCCATAGCCATTCGAGTTCTTCAGTTTTTGGTAGATATTTGCGAAGGCGCAACAGAACTTGGGTGTTGGAGAATCAGAATGAAAATGGCCGATGGTGA

Protein sequence

MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPSLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVDSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRLAGERDPPAVYTEMDGAFNGNGAPRRVSWASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRYLRRRNRTWVLENQNENGRW

Homology

[Close]

BLAST of Sed0010602 vs. NCBI nr
Match: XP_004143127.2 (E3 ubiquitin-protein ligase RDUF1, partial [Cucumis sativus])

HSP 1 Score: 647.5 bits (1669), Expect = 7.0e-182
Identity = 321/379 (84.70%), Postives = 343/379 (90.50%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M++GTAS+WCYRCNR VR W QD+ITCP CDGGF+EAIE A+SLPP+NLH R SPS I +
Sbjct: 37  MSTGTASYWCYRCNRFVRAWAQDSITCPYCDGGFVEAIETASSLPPSNLHRRLSPSAIHT 96

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           LDQD+ QSP    R+SRRRLGDRSTFNPVVVLRGS D GDV GGGERN+FDIYYDDGAGS
Sbjct: 97  LDQDSFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADAGDVVGGGERNSFDIYYDDGAGS 156

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 157 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 216

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHS+CIIPWLSMRNSCPVCR ELPSERV+PA GV
Sbjct: 217 SDSHCAVCKEAFEIGTEAREMPCKHIYHSECIIPWLSMRNSCPVCRHELPSERVSPAGGV 276

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERDPPAVYTEMDG FNGNG PRRVS
Sbjct: 277 SDRVVDEE-TVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFNGNGVPRRVS 336

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS+SSSS  SNESESVSRSHSHSSSSVF RY
Sbjct: 337 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSSSSSSSPSNESESVSRSHSHSSSSVFSRY 396

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 397 LRRQNRAWVLENQNENGRW 414

[Close]

BLAST of Sed0010602 vs. NCBI nr
Match: KAE8646961.1 (hypothetical protein Csa_020907 [Cucumis sativus])

HSP 1 Score: 647.5 bits (1669), Expect = 7.0e-182
Identity = 321/379 (84.70%), Postives = 343/379 (90.50%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M++GTAS+WCYRCNR VR W QD+ITCP CDGGF+EAIE A+SLPP+NLH R SPS I +
Sbjct: 1   MSTGTASYWCYRCNRFVRAWAQDSITCPYCDGGFVEAIETASSLPPSNLHRRLSPSAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           LDQD+ QSP    R+SRRRLGDRSTFNPVVVLRGS D GDV GGGERN+FDIYYDDGAGS
Sbjct: 61  LDQDSFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADAGDVVGGGERNSFDIYYDDGAGS 120

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 180

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHS+CIIPWLSMRNSCPVCR ELPSERV+PA GV
Sbjct: 181 SDSHCAVCKEAFEIGTEAREMPCKHIYHSECIIPWLSMRNSCPVCRHELPSERVSPAGGV 240

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERDPPAVYTEMDG FNGNG PRRVS
Sbjct: 241 SDRVVDEE-TVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFNGNGVPRRVS 300

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS+SSSS  SNESESVSRSHSHSSSSVF RY
Sbjct: 301 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSSSSSSSPSNESESVSRSHSHSSSSVFSRY 360

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 361 LRRQNRAWVLENQNENGRW 378

[Close]

BLAST of Sed0010602 vs. NCBI nr
Match: XP_038902866.1 (E3 ubiquitin-protein ligase RDUF1 [Benincasa hispida])

HSP 1 Score: 642.9 bits (1657), Expect = 1.7e-180
Identity = 321/379 (84.70%), Postives = 340/379 (89.71%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M+SGTAS+WCYRCNR VR W QD+ITCP CDGGF+EAIE A+SLP ANLH R SPS I +
Sbjct: 1   MSSGTASYWCYRCNRFVRAWAQDSITCPYCDGGFVEAIETASSLPAANLHRRFSPSTIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           LDQD+ QSP    R+SRRRLGDRSTFNPVVVLRGS DGGDV GGGERN+FDIYYDDGAGS
Sbjct: 61  LDQDSFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADGGDVVGGGERNSFDIYYDDGAGS 120

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 180

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA  V
Sbjct: 181 SDSHCAVCKEAFEIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGSV 240

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERD PAVYTEMDG FN NGAPRRVS
Sbjct: 241 SDRVVDEE-TVGLTIWRLPGGGFAVGRFAGGRLAGERDTPAVYTEMDGGFNANGAPRRVS 300

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS SSSS  SN+SESVSRSHSHSSSSVF RY
Sbjct: 301 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSTSSSSSPSNDSESVSRSHSHSSSSVFSRY 360

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 361 LRRQNRAWVLENQNENGRW 378

[Close]

BLAST of Sed0010602 vs. NCBI nr
Match: XP_008464108.1 (PREDICTED: E3 ubiquitin-protein ligase RING1 [Cucumis melo] >KAA0061885.1 E3 ubiquitin-protein ligase RING1 [Cucumis melo var. makuwa] >TYK15372.1 E3 ubiquitin-protein ligase RING1 [Cucumis melo var. makuwa])

HSP 1 Score: 637.1 bits (1642), Expect = 9.5e-179
Identity = 316/379 (83.38%), Postives = 339/379 (89.45%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M++GTAS+WCYRC+R VR W QD+ITCP CDGGF+EAIE A+SLP  NLH R SP+ I +
Sbjct: 1   MSTGTASYWCYRCSRFVRAWAQDSITCPYCDGGFVEAIETASSLPAPNLHRRLSPTAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           +DQD+ QSP    R+SRRR GDRSTFNPVVVLRGS D GDV GGGERN+FDIYYDDGAGS
Sbjct: 61  VDQDSFQSPRLSTRRSRRRFGDRSTFNPVVVLRGSADAGDVVGGGERNSFDIYYDDGAGS 120

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 180

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA GV
Sbjct: 181 SDSHCAVCKEAFEIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGGV 240

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERDPPAVYTEMDG FN NG PRRVS
Sbjct: 241 SDRVVDEE-TVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFNANGVPRRVS 300

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS+SSSS  SNESESVSRSHSHSSSSVF RY
Sbjct: 301 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSSSSSSSPSNESESVSRSHSHSSSSVFSRY 360

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 361 LRRQNRAWVLENQNENGRW 378

[Close]

BLAST of Sed0010602 vs. NCBI nr
Match: XP_022947282.1 (E3 ubiquitin-protein ligase RDUF2-like [Cucurbita moschata] >KAG6605446.1 E3 ubiquitin-protein ligase RDUF1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035394.1 E3 ubiquitin-protein ligase RDUF1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 635.6 bits (1638), Expect = 2.8e-178
Identity = 322/380 (84.74%), Postives = 339/380 (89.21%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M SGTAS+WCYRCNR VR WVQDTI+CP CDGGF+EAIE A+SLP ANLH R SPS I +
Sbjct: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDV-GGGGERNNFDIYYDDGAG 120
           LDQD  QSP    R+SRRRLGDRSTFNPVVVLRGS DGGD  GGGGE N+FDIYYDDGAG
Sbjct: 61  LDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADGGDEGGGGGENNSFDIYYDDGAG 120

Query: 121 SGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHV 180
           SGLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HV
Sbjct: 121 SGLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHV 180

Query: 181 DSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAG 240
           DSDSHCAVCKEAFEIGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA G
Sbjct: 181 DSDSHCAVCKEAFEIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGG 240

Query: 241 VSDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRV 300
           VSDRV D+E TVGLTIWRLPGGGFAV     GRL GERDPPAVYTEMDG FN NGAPRRV
Sbjct: 241 VSDRVVDEE-TVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGGFNANGAPRRV 300

Query: 301 SWASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGR 360
           SWASRRSRGRE+RGIG+ FRN+FSFFGRLRSSNSSSSLASNE+ESVSRSHS SSSSVF R
Sbjct: 301 SWASRRSRGRENRGIGRTFRNIFSFFGRLRSSNSSSSLASNETESVSRSHSRSSSSVFSR 360

Query: 361 YLRRRNRTWVLENQNENGRW 375
           YLRR NRTW LEN  ENGRW
Sbjct: 361 YLRRPNRTW-LENHTENGRW 378

[Close]

BLAST of Sed0010602 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 7.5e-78
Identity = 181/395 (45.82%), Postives = 236/395 (59.75%), Query Frame = 0


Query: 5   TASFWCYRCNRTVRVWVQD------TITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRI 64
           TAS+WCY C R V VW         ++ CP CDGGF+E I  ++S         ++   I
Sbjct: 15  TASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSS--------AATELTI 74

Query: 65  PSLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGG----ERNNFDIYY 124
           P+  +    +   R    RRR G R +FNPV+VL+G     + G  G    +R  F+ YY
Sbjct: 75  PASTEVRSINNNRRSVIRRRRSGRRPSFNPVIVLQGGAGEREEGEEGDAARDRRAFEFYY 134

Query: 125 DDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEIN--GLGTSENPPASKAAVESMPTI 184
           DDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E +  G+G S NPPASK+A+ES+P +
Sbjct: 135 DDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAIESLPRV 194

Query: 185 EILKTHVDSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSE 244
           EI   H+ S+++CAVC E FE  T+AREMPCKH++H DCI+PWLS+RNSCPVCR ELPSE
Sbjct: 195 EISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 254

Query: 245 RVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRL-----AGERDPPAVYTEMDGAFNG 304
              P    ++   +++  VG+TIWRLPGGGFAVGR       GER  P V TEMDG   G
Sbjct: 255 ---PNRRSNNN--EEDNAVGMTIWRLPGGGFAVGRFNAAMRDGERVLPVVLTEMDGGGIG 314

Query: 305 NG--APRRVSWASRRSRG---RESRGIG----------QRFRNMFSFFGRL---RSSNSS 359
           N    PRR+SW   RS G    +S G G          +  R M S   R+   RSS+SS
Sbjct: 315 NSQDGPRRISWV--RSHGTLESDSNGTGSGSGSGGRLRRMVRGMVSLMRRVRPNRSSSSS 374

[Close]

BLAST of Sed0010602 vs. ExPASy Swiss-Prot
Match: O22283 (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 7.5e-78
Identity = 184/408 (45.10%), Postives = 240/408 (58.82%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPAN-------LHHRS 60
           M SG  S+WCY C+R   VWV D+I+CP CDGGFLE I+      P++         HR 
Sbjct: 1   MASG--SYWCYSCSRF--VWVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHR- 60

Query: 61  SPSRIP-----------SLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGS---PDGG 120
           SP+R P           S+  D   +P    R    R     + NPV+VLRGS   P   
Sbjct: 61  SPTRFPPPSSSSSTPSASMHADNSPTPTIVTRTRSNR-----SPNPVIVLRGSAAAPSSD 120

Query: 121 DVGGGGERNNFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEIN---GLGTS 180
            V  G +R+ F +YYDDG  SGLRP+P +M+EFL+G+GFDRLL+Q++Q+E+N    L + 
Sbjct: 121 VVSEGLDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRSC 180

Query: 181 ENPPASKAAVESMPTIEILKTHV--DSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIP 240
           E+PPASK+A+E++P IEI  TH+  DS SHCAVCKE F + + AREMPC HIYH DCI+P
Sbjct: 181 EHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILP 240

Query: 241 WLSMRNSCPVCRDELPSERVAPAAGVSDRVF------DDETTVGLTIWRLPGGGFAVGRL 300
           WL++RNSCPVCR ELP+E +    G +          ++++  GLTIWRLPGGGFAVGR+
Sbjct: 241 WLAIRNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGRI 300

Query: 301 -----AGERDPPAVYTEMDGAFNGN-GAPRRVSWASRR----SRGRESRGIG--QRFRNM 360
                 G+R  P VYTE+DG   G+   PRRV+W SRR      G   RG G   R   +
Sbjct: 301 PGGWRGGDRMMPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMRL 360

[Close]

BLAST of Sed0010602 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-77
Identity = 173/382 (45.29%), Postives = 235/382 (61.52%), Query Frame = 0


Query: 2   TSGTASFWCYRCNRTVRVWV-QDT---ITCPTCDGGFLEAIEAAASLPPANLHHRSSPSR 61
           T+ T S+WCY C R + VW  QD    + CP C+GGF+E IE +++   A +   +S   
Sbjct: 25  TTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAI--PASTPE 84

Query: 62  IPSLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGG-------DVGGGG--ERN 121
           + S+++        R    RRR   R++FNPV+VL G   GG       + G G   ER 
Sbjct: 85  VRSVEET------HRSIIRRRRSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERR 144

Query: 122 NFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEI--NGLGTSENPPASKAAV 181
            ++ YYDDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E   NG+G S NPPASK+A+
Sbjct: 145 AYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAI 204

Query: 182 ESMPTIEILKTHVDSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCR 241
           ES+P +EI   H  ++++CAVC E FE G + REMPCKHI+H DCI+PWLS+RNSCPVCR
Sbjct: 205 ESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCR 264

Query: 242 DELPSERVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRL-----AGERDPPAVYTEM 301
            ELPS+ +        R  ++E  VG+TIWRLPGGGFAVGR       GER  P V TEM
Sbjct: 265 FELPSDPI-------QRSNEEEHAVGMTIWRLPGGGFAVGRFNAGVREGERILPVVLTEM 324

Query: 302 D-GAFNGNGAPRRVSWA-------SRRSRGRESRG--IGQRFRNMFSFFGRLRSS--NSS 352
           D G    N  PRR+SW          R+ GR   G  + +  R M SF  R+R S  +S+
Sbjct: 325 DGGGLGSNEGPRRISWVRAHETPEMSRNGGRSGNGGRLRRAVRGMVSFMRRVRPSRGSSN 384

[Close]

BLAST of Sed0010602 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.6e-35
Identity = 95/275 (34.55%), Postives = 145/275 (52.73%), Query Frame = 0


Query: 8   FWCYRCNRTVRVWV---QDTITCPTCDGGFLEAI-------------------------- 67
           F+CY+CNRTV V +       TCP C+ GFLE                            
Sbjct: 23  FFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFL 82

Query: 68  ---EAAASLPPANLHHRSS--PSRIPSLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLR 127
              +  ASL P      SS   S   S+D +     G     +R   GD   F+P   ++
Sbjct: 83  TLSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSG----PTRSGRGDPFAFDPFTFIQ 142

Query: 128 GSPDGGDVGGGGERNNFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGL 187
              +  D+   G +  F +  ++ +  G R +PA + ++ +G G ++L++QLA+ + N  
Sbjct: 143 NHLN--DLRSSGAQIEF-VIQNNPSDQGFR-LPANIGDYFIGPGLEQLIQQLAENDPNRY 202

Query: 188 GTSENPPASKAAVESMPTIEILKTHVDSD-SHCAVCKEAFEIGTDAREMPCKHIYHSDCI 242
           GT   PPASK+A+E++P + I K++++S+ + CAVC + FE GT+A++MPCKH+YH DC+
Sbjct: 203 GT---PPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCL 262

[Close]

BLAST of Sed0010602 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-34
Identity = 91/315 (28.89%), Postives = 154/315 (48.89%), Query Frame = 0


Query: 8   FWCYRCNRTVRVWVQDTIT--CPTCDGGFLEAIEAAASLPPANLHHRSSPSRIP------ 67
           F+CY+CN+TV + +  +    CP C+ GFLE  E        N +  SS S  P      
Sbjct: 21  FFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFS 80

Query: 68  ---------------SLDQDTLQSPGFRLR-QSRRRLGDRSTFNPVVVLRGSPDGGDVGG 127
                           +D  +L  P  + + +S ++      F+P   L+         G
Sbjct: 81  TLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTLRSSG 140

Query: 128 GGERNNFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASK 187
                +F+   ++        +P    ++  G G ++L++QLA+ + N  GT   PPASK
Sbjct: 141 ----THFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGT---PPASK 200

Query: 188 AAVESMPTIEILKTHVDSD-SHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSC 247
           +A++++PT+++ K  + S+ + CAVC + FE G+D ++MPCKH++H DC++PWL + NSC
Sbjct: 201 SAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSC 260

Query: 248 PVCRDELPSERVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRLAGERDP------PA 292
           PVCR ELP++         D  +++ +          G G   G + G++ P      P 
Sbjct: 261 PVCRFELPTD---------DPDYENRSQGS------QGSGDGQGSVEGQQTPRFSIQLPW 313

[Close]

BLAST of Sed0010602 vs. ExPASy TrEMBL
Match: A0A0A0KE74 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G190250 PE=4 SV=1)

HSP 1 Score: 647.5 bits (1669), Expect = 3.4e-182
Identity = 321/379 (84.70%), Postives = 343/379 (90.50%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M++GTAS+WCYRCNR VR W QD+ITCP CDGGF+EAIE A+SLPP+NLH R SPS I +
Sbjct: 39  MSTGTASYWCYRCNRFVRAWAQDSITCPYCDGGFVEAIETASSLPPSNLHRRLSPSAIHT 98

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           LDQD+ QSP    R+SRRRLGDRSTFNPVVVLRGS D GDV GGGERN+FDIYYDDGAGS
Sbjct: 99  LDQDSFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADAGDVVGGGERNSFDIYYDDGAGS 158

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 159 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 218

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHS+CIIPWLSMRNSCPVCR ELPSERV+PA GV
Sbjct: 219 SDSHCAVCKEAFEIGTEAREMPCKHIYHSECIIPWLSMRNSCPVCRHELPSERVSPAGGV 278

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERDPPAVYTEMDG FNGNG PRRVS
Sbjct: 279 SDRVVDEE-TVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFNGNGVPRRVS 338

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS+SSSS  SNESESVSRSHSHSSSSVF RY
Sbjct: 339 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSSSSSSSPSNESESVSRSHSHSSSSVFSRY 398

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 399 LRRQNRAWVLENQNENGRW 416

[Close]

BLAST of Sed0010602 vs. ExPASy TrEMBL
Match: A0A5A7V7N5 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00040 PE=4 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 4.6e-179
Identity = 316/379 (83.38%), Postives = 339/379 (89.45%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M++GTAS+WCYRC+R VR W QD+ITCP CDGGF+EAIE A+SLP  NLH R SP+ I +
Sbjct: 1   MSTGTASYWCYRCSRFVRAWAQDSITCPYCDGGFVEAIETASSLPAPNLHRRLSPTAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           +DQD+ QSP    R+SRRR GDRSTFNPVVVLRGS D GDV GGGERN+FDIYYDDGAGS
Sbjct: 61  VDQDSFQSPRLSTRRSRRRFGDRSTFNPVVVLRGSADAGDVVGGGERNSFDIYYDDGAGS 120

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 180

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA GV
Sbjct: 181 SDSHCAVCKEAFEIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGGV 240

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERDPPAVYTEMDG FN NG PRRVS
Sbjct: 241 SDRVVDEE-TVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFNANGVPRRVS 300

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS+SSSS  SNESESVSRSHSHSSSSVF RY
Sbjct: 301 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSSSSSSSPSNESESVSRSHSHSSSSVFSRY 360

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 361 LRRQNRAWVLENQNENGRW 378

[Close]

BLAST of Sed0010602 vs. ExPASy TrEMBL
Match: A0A1S3CKQ2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103502070 PE=4 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 4.6e-179
Identity = 316/379 (83.38%), Postives = 339/379 (89.45%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M++GTAS+WCYRC+R VR W QD+ITCP CDGGF+EAIE A+SLP  NLH R SP+ I +
Sbjct: 1   MSTGTASYWCYRCSRFVRAWAQDSITCPYCDGGFVEAIETASSLPAPNLHRRLSPTAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGGERNNFDIYYDDGAGS 120
           +DQD+ QSP    R+SRRR GDRSTFNPVVVLRGS D GDV GGGERN+FDIYYDDGAGS
Sbjct: 61  VDQDSFQSPRLSTRRSRRRFGDRSTFNPVVVLRGSADAGDVVGGGERNSFDIYYDDGAGS 120

Query: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHVD 180
           GLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HVD
Sbjct: 121 GLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVD 180

Query: 181 SDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAGV 240
           SDSHCAVCKEAFEIGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA GV
Sbjct: 181 SDSHCAVCKEAFEIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGGV 240

Query: 241 SDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRVS 300
           SDRV D+E TVGLTIWRLPGGGFAV     GRLAGERDPPAVYTEMDG FN NG PRRVS
Sbjct: 241 SDRVVDEE-TVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFNANGVPRRVS 300

Query: 301 WASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGRY 360
           WASRRSRGRESRGIG+ FRN+FSFFGR RSS+SSSS  SNESESVSRSHSHSSSSVF RY
Sbjct: 301 WASRRSRGRESRGIGRTFRNIFSFFGRFRSSSSSSSSPSNESESVSRSHSHSSSSVFSRY 360

Query: 361 LRRRNRTWVLENQNENGRW 375
           LRR+NR WVLENQNENGRW
Sbjct: 361 LRRQNRAWVLENQNENGRW 378

[Close]

BLAST of Sed0010602 vs. ExPASy TrEMBL
Match: A0A6J1G610 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111451192 PE=4 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.3e-178
Identity = 322/380 (84.74%), Postives = 339/380 (89.21%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M SGTAS+WCYRCNR VR WVQDTI+CP CDGGF+EAIE A+SLP ANLH R SPS I +
Sbjct: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDV-GGGGERNNFDIYYDDGAG 120
           LDQD  QSP    R+SRRRLGDRSTFNPVVVLRGS DGGD  GGGGE N+FDIYYDDGAG
Sbjct: 61  LDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADGGDEGGGGGENNSFDIYYDDGAG 120

Query: 121 SGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHV 180
           SGLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HV
Sbjct: 121 SGLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHV 180

Query: 181 DSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAG 240
           DSDSHCAVCKEAFEIGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA G
Sbjct: 181 DSDSHCAVCKEAFEIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGG 240

Query: 241 VSDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRV 300
           VSDRV D+E TVGLTIWRLPGGGFAV     GRL GERDPPAVYTEMDG FN NGAPRRV
Sbjct: 241 VSDRVVDEE-TVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGGFNANGAPRRV 300

Query: 301 SWASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGR 360
           SWASRRSRGRE+RGIG+ FRN+FSFFGRLRSSNSSSSLASNE+ESVSRSHS SSSSVF R
Sbjct: 301 SWASRRSRGRENRGIGRTFRNIFSFFGRLRSSNSSSSLASNETESVSRSHSRSSSSVFSR 360

Query: 361 YLRRRNRTWVLENQNENGRW 375
           YLRR NRTW LEN  ENGRW
Sbjct: 361 YLRRPNRTW-LENHTENGRW 378

[Close]

BLAST of Sed0010602 vs. ExPASy TrEMBL
Match: A0A6J1L6T2 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499706 PE=4 SV=1)

HSP 1 Score: 631.3 bits (1627), Expect = 2.5e-177
Identity = 320/380 (84.21%), Postives = 337/380 (88.68%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M SGTAS+WCYRCNR VR WVQDTI+CP CDGGF+EAIE A+SLP ANLH R SPS I +
Sbjct: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 60

Query: 61  LDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDV-GGGGERNNFDIYYDDGAG 120
           LDQD  QSP    R+SRRRLGDRSTFNPVVVLRGS DGGD  GGGGE N+FDIYYDDGAG
Sbjct: 61  LDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADGGDEGGGGGENNSFDIYYDDGAG 120

Query: 121 SGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAVESMPTIEILKTHV 180
           SGLRPVPATMSEFLMGTGFDRLLEQLAQ+EING G SENPPASKAAVESMPTIEIL++HV
Sbjct: 121 SGLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHV 180

Query: 181 DSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSERVAPAAG 240
           DSDSHCAVCKEAF IGT+AREMPCKHIYHSDCIIPWLSMRNSCPVCR ELPSERV+PA G
Sbjct: 181 DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGG 240

Query: 241 VSDRVFDDETTVGLTIWRLPGGGFAV-----GRLAGERDPPAVYTEMDGAFNGNGAPRRV 300
           VSDRV D+E TVGLTIWRLPGGGFAV     GRL GERDPPAVYTEMDG FN NG PRRV
Sbjct: 241 VSDRVVDEE-TVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGGFNANGVPRRV 300

Query: 301 SWASRRSRGRESRGIGQRFRNMFSFFGRLRSSNSSSSLASNESESVSRSHSHSSSSVFGR 360
           SWASRRSRGRE+RGIG+ FRN+FSFFGRLRSSNSSSSLASNE+ESVSRSHS SSSSVF R
Sbjct: 301 SWASRRSRGRENRGIGRTFRNIFSFFGRLRSSNSSSSLASNETESVSRSHSRSSSSVFSR 360

Query: 361 YLRRRNRTWVLENQNENGRW 375
           YLRR NRTW LEN  ENGRW
Sbjct: 361 YLRRPNRTW-LENHTENGRW 378

[Close]

BLAST of Sed0010602 vs. TAIR 10
Match: AT2G39720.1 (RING-H2 finger C2A )

HSP 1 Score: 292.4 bits (747), Expect = 5.3e-79
Identity = 184/408 (45.10%), Postives = 240/408 (58.82%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPAN-------LHHRS 60
           M SG  S+WCY C+R   VWV D+I+CP CDGGFLE I+      P++         HR 
Sbjct: 1   MASG--SYWCYSCSRF--VWVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHR- 60

Query: 61  SPSRIP-----------SLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGS---PDGG 120
           SP+R P           S+  D   +P    R    R     + NPV+VLRGS   P   
Sbjct: 61  SPTRFPPPSSSSSTPSASMHADNSPTPTIVTRTRSNR-----SPNPVIVLRGSAAAPSSD 120

Query: 121 DVGGGGERNNFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEIN---GLGTS 180
            V  G +R+ F +YYDDG  SGLRP+P +M+EFL+G+GFDRLL+Q++Q+E+N    L + 
Sbjct: 121 VVSEGLDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRSC 180

Query: 181 ENPPASKAAVESMPTIEILKTHV--DSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIP 240
           E+PPASK+A+E++P IEI  TH+  DS SHCAVCKE F + + AREMPC HIYH DCI+P
Sbjct: 181 EHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILP 240

Query: 241 WLSMRNSCPVCRDELPSERVAPAAGVSDRVF------DDETTVGLTIWRLPGGGFAVGRL 300
           WL++RNSCPVCR ELP+E +    G +          ++++  GLTIWRLPGGGFAVGR+
Sbjct: 241 WLAIRNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGRI 300

Query: 301 -----AGERDPPAVYTEMDGAFNGN-GAPRRVSWASRR----SRGRESRGIG--QRFRNM 360
                 G+R  P VYTE+DG   G+   PRRV+W SRR      G   RG G   R   +
Sbjct: 301 PGGWRGGDRMMPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMRL 360

[Close]

BLAST of Sed0010602 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 292.4 bits (747), Expect = 5.3e-79
Identity = 181/395 (45.82%), Postives = 236/395 (59.75%), Query Frame = 0


Query: 5   TASFWCYRCNRTVRVWVQD------TITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRI 64
           TAS+WCY C R V VW         ++ CP CDGGF+E I  ++S         ++   I
Sbjct: 15  TASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSS--------AATELTI 74

Query: 65  PSLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGGDVGGGG----ERNNFDIYY 124
           P+  +    +   R    RRR G R +FNPV+VL+G     + G  G    +R  F+ YY
Sbjct: 75  PASTEVRSINNNRRSVIRRRRSGRRPSFNPVIVLQGGAGEREEGEEGDAARDRRAFEFYY 134

Query: 125 DDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEIN--GLGTSENPPASKAAVESMPTI 184
           DDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E +  G+G S NPPASK+A+ES+P +
Sbjct: 135 DDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAIESLPRV 194

Query: 185 EILKTHVDSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCRDELPSE 244
           EI   H+ S+++CAVC E FE  T+AREMPCKH++H DCI+PWLS+RNSCPVCR ELPSE
Sbjct: 195 EISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 254

Query: 245 RVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRL-----AGERDPPAVYTEMDGAFNG 304
              P    ++   +++  VG+TIWRLPGGGFAVGR       GER  P V TEMDG   G
Sbjct: 255 ---PNRRSNNN--EEDNAVGMTIWRLPGGGFAVGRFNAAMRDGERVLPVVLTEMDGGGIG 314

Query: 305 NG--APRRVSWASRRSRG---RESRGIG----------QRFRNMFSFFGRL---RSSNSS 359
           N    PRR+SW   RS G    +S G G          +  R M S   R+   RSS+SS
Sbjct: 315 NSQDGPRRISWV--RSHGTLESDSNGTGSGSGSGGRLRRMVRGMVSLMRRVRPNRSSSSS 374

[Close]

BLAST of Sed0010602 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 291.6 bits (745), Expect = 9.1e-79
Identity = 173/382 (45.29%), Postives = 235/382 (61.52%), Query Frame = 0


Query: 2   TSGTASFWCYRCNRTVRVWV-QDT---ITCPTCDGGFLEAIEAAASLPPANLHHRSSPSR 61
           T+ T S+WCY C R + VW  QD    + CP C+GGF+E IE +++   A +   +S   
Sbjct: 25  TTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAI--PASTPE 84

Query: 62  IPSLDQDTLQSPGFRLRQSRRRLGDRSTFNPVVVLRGSPDGG-------DVGGGG--ERN 121
           + S+++        R    RRR   R++FNPV+VL G   GG       + G G   ER 
Sbjct: 85  VRSVEET------HRSIIRRRRSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERR 144

Query: 122 NFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEI--NGLGTSENPPASKAAV 181
            ++ YYDDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E   NG+G S NPPASK+A+
Sbjct: 145 AYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAI 204

Query: 182 ESMPTIEILKTHVDSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVCR 241
           ES+P +EI   H  ++++CAVC E FE G + REMPCKHI+H DCI+PWLS+RNSCPVCR
Sbjct: 205 ESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCR 264

Query: 242 DELPSERVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRL-----AGERDPPAVYTEM 301
            ELPS+ +        R  ++E  VG+TIWRLPGGGFAVGR       GER  P V TEM
Sbjct: 265 FELPSDPI-------QRSNEEEHAVGMTIWRLPGGGFAVGRFNAGVREGERILPVVLTEM 324

Query: 302 D-GAFNGNGAPRRVSWA-------SRRSRGRESRG--IGQRFRNMFSFFGRLRSS--NSS 352
           D G    N  PRR+SW          R+ GR   G  + +  R M SF  R+R S  +S+
Sbjct: 325 DGGGLGSNEGPRRISWVRAHETPEMSRNGGRSGNGGRLRRAVRGMVSFMRRVRPSRGSSN 384

[Close]

BLAST of Sed0010602 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-35
Identity = 91/315 (28.89%), Postives = 154/315 (48.89%), Query Frame = 0


Query: 8   FWCYRCNRTVRVWVQDTIT--CPTCDGGFLEAIEAAASLPPANLHHRSSPSRIP------ 67
           F+CY+CN+TV + +  +    CP C+ GFLE  E        N +  SS S  P      
Sbjct: 21  FFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFS 80

Query: 68  ---------------SLDQDTLQSPGFRLR-QSRRRLGDRSTFNPVVVLRGSPDGGDVGG 127
                           +D  +L  P  + + +S ++      F+P   L+         G
Sbjct: 81  TLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTLRSSG 140

Query: 128 GGERNNFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASK 187
                +F+   ++        +P    ++  G G ++L++QLA+ + N  GT   PPASK
Sbjct: 141 ----THFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGT---PPASK 200

Query: 188 AAVESMPTIEILKTHVDSD-SHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSC 247
           +A++++PT+++ K  + S+ + CAVC + FE G+D ++MPCKH++H DC++PWL + NSC
Sbjct: 201 SAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSC 260

Query: 248 PVCRDELPSERVAPAAGVSDRVFDDETTVGLTIWRLPGGGFAVGRLAGERDP------PA 292
           PVCR ELP++         D  +++ +          G G   G + G++ P      P 
Sbjct: 261 PVCRFELPTD---------DPDYENRSQGS------QGSGDGQGSVEGQQTPRFSIQLPW 313

[Close]

BLAST of Sed0010602 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-34
Identity = 90/246 (36.59%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 1   MTSGTASFWCYRCNRTVRVWVQDTITCPTCDGGFLEAIEAAASLPPANLHHRSSPSRIPS 60
           M+S   + WC+RC R V +  +D + C  C GGF+E I+    + P+  H      R P+
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAV-CSYCGGGFVEEID----IGPSRAHR--DVERDPT 60

Query: 61  LDQDTLQSPGFRLRQSRR--------RLGDR-----STFNPVVVLRGSPDGGDVGGGGER 120
            D     S   R R + R        RLG       S   P+++  G       GG    
Sbjct: 61  FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGD--- 120

Query: 121 NNFDIYYDDGAGSGLRPVPAT-MSEFLMGTGFDRLLEQLAQMEINGLGTSENPPASKAAV 180
           N+    + +GA  G+     T   ++  G G + L+EQL+    +G      PPA K+++
Sbjct: 121 NSSVEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLS----SGTHHRGPPPAPKSSI 180

Query: 181 ESMPTIEILKTHV-DSDSHCAVCKEAFEIGTDAREMPCKHIYHSDCIIPWLSMRNSCPVC 232
           +++PTI+I + H+  SDSHC VCK+ FE+ ++A++MPC HIYHSDCI+PWL   NSCPVC
Sbjct: 181 DALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVC 232

The following BLAST results are available for this feature:

BLAST of Sed0010602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143127.2	7.0e-182	84.70	E3 ubiquitin-protein ligase RDUF1, partial [Cucumis sativus]	[more]
KAE8646961.1	7.0e-182	84.70	hypothetical protein Csa_020907 [Cucumis sativus]	[more]
XP_038902866.1	1.7e-180	84.70	E3 ubiquitin-protein ligase RDUF1 [Benincasa hispida]	[more]
XP_008464108.1	9.5e-179	83.38	PREDICTED: E3 ubiquitin-protein ligase RING1 [Cucumis melo] >KAA0061885.1 E3 ubi...	[more]
XP_022947282.1	2.8e-178	84.74	E3 ubiquitin-protein ligase RDUF2-like [Cucurbita moschata] >KAG6605446.1 E3 ubi...	[more]

BLAST of Sed0010602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T5	7.5e-78	45.82	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
O22283	7.5e-78	45.10	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9SNB6	1.3e-77	45.29	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
P0CH30	4.6e-35	34.55	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	5.1e-34	28.89	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]

BLAST of Sed0010602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE74	3.4e-182	84.70	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G190250 PE...	[more]
A0A5A7V7N5	4.6e-179	83.38	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CKQ2	4.6e-179	83.38	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103502070 PE=4 ...	[more]
A0A6J1G610	1.3e-178	84.74	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111451192...	[more]
A0A6J1L6T2	2.5e-177	84.21	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499706 P...	[more]

BLAST of Sed0010602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39720.1	5.3e-79	45.10	RING-H2 finger C2A	[more]
AT5G59550.1	5.3e-79	45.82	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G46620.1	9.1e-79	45.29	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G19950.1	3.6e-35	28.89	RING/U-box superfamily protein	[more]
AT3G56580.2	1.1e-34	36.59	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 185..225 e-value: 2.6E-7 score: 40.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 184..226 e-value: 1.3E-10 score: 41.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 185..226 score: 12.090947
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon	PFAM	PF14369	zinc_ribbon_9	coord: 7..38 e-value: 4.4E-12 score: 46.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 150..232 e-value: 4.3E-21 score: 76.4
IPR010543	Domain of unknown function DUF1117	PFAM	PF06547	DUF1117	coord: 251..356 e-value: 1.5E-34 score: 119.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..347
None	No IPR available	PANTHER	PTHR15710:SF24	OS05G0110000 PROTEIN	coord: 5..310
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 5..310
None	No IPR available	CDD	cd16667	RING-H2_RNF126_like	coord: 185..226 e-value: 5.30741E-24 score: 91.2252
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 165..232
IPR000253	Forkhead-associated (FHA) domain	PROSITE	PS50006	FHA_DOMAIN	coord: 318..374 score: 7.2801

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010602.1	Sed0010602.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006810	transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity