Sed0010538 (gene) Chayote v1

Overview


Name	Sed0010538
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Dof zinc finger protein
Location	LG12: 31116093 .. 31117417 (-)
RNA-Seq Expression	Sed0010538
Synteny	Sed0010538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTACATGGGATATTTGTCAGTGCTTTAGAAGCTGAAATTCAGAGAACTCCCACTTTTATCTCTCACATTTCCCCAAATTTGTTCATCATCAAAAACACTCCCACCAAAAAAAAAATAATAATAAAAATTAAACCCATCTTCACCAAATAAGTCATTCCCAGTTCAGAAGAAGCAAATTGCACAGTCTGCTCTGTTTTTTACTCTGTTTTGCTCTGTTTTGGCTGTGGAAATGCAGGAAATTCACTCGATCGCCGGCGGCAGCCGCTTGTTTTGCGGCGGCGGCGACCGCCGCTTACGGCCGCACCTCCACCACCAAGCCGCCTTGAAGTGCCCAAGATGTGATTCTATAAACACAAAATTCTGTTATTACAATAACTACAATCTTTCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGGAAAACCAAACGCTCCTCCAACTCCAAAACCCACCTCAAATCCACCTCCAATTCCAGCAGCGAAACCTCCAGCCTCGCCGCCACTCCACCGACGGCGGTGGCCGACGCCGTCTCCGCTCCGTCGCTAGCGCCGCCGATTTCCGACGCCGGAATTTTCTCGGATATCGAGACATTGCCGTTCGGATTCGGCAGCGTCGCCTCCGACGTGTCGCCGTTCGCGATGAACCAGCAGTTTCCGGCGAGTCAATGGGAGATCTCTGGCGGGGGGTATGTAGATCAGACGGCTCACGTTGATCTATCGGGGAATTGTAGATCGAGTAACGTTGGGTTTGGACCGTTTGATTGGCAATCGAACGGAGATCATCAGGCTCTGTTTGATCTTCCCAGCGCCGTTGATCAAGCATACTGGAGTCAACAACATCAATGGACCGATCAAGACCAACCAAATCTGTACCTTCCGTAAATCGCTCCTGTTTAATTTTATTATTACTTTTTTGCTAATTTTAGTATAAATTTAAAGAAAAATCTCTCAATGAAAAAACATCGAAATAGATAAAGAAAATAGAGACGTATAGAGAGAACGTTATTATTATATTATTATTTTCTTTCTATGTAAATCTGGCTATAGCATATTAATTTATTTTTTCAGTATTAGTTTAATTTGTTACCTAATTAAAACTAGAGGGGTACATGGCCTACAATAGGTTAGATTAGGGAATTGTTTTTAGATCGCCATGAATTTCTCATGTCAAAAAAAAAAAAAAACTTAAATATTTAAATGTGTATTTAGGCCCTCATTTATGTAAATGGTCGAATTGATTATAATAATCCAACCGATATTTGCTTTA

mRNA sequence

GTGGTACATGGGATATTTGTCAGTGCTTTAGAAGCTGAAATTCAGAGAACTCCCACTTTTATCTCTCACATTTCCCCAAATTTGTTCATCATCAAAAACACTCCCACCAAAAAAAAAATAATAATAAAAATTAAACCCATCTTCACCAAATAAGTCATTCCCAGTTCAGAAGAAGCAAATTGCACAGTCTGCTCTGTTTTTTACTCTGTTTTGCTCTGTTTTGGCTGTGGAAATGCAGGAAATTCACTCGATCGCCGGCGGCAGCCGCTTGTTTTGCGGCGGCGGCGACCGCCGCTTACGGCCGCACCTCCACCACCAAGCCGCCTTGAAGTGCCCAAGATGTGATTCTATAAACACAAAATTCTGTTATTACAATAACTACAATCTTTCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGGAAAACCAAACGCTCCTCCAACTCCAAAACCCACCTCAAATCCACCTCCAATTCCAGCAGCGAAACCTCCAGCCTCGCCGCCACTCCACCGACGGCGGTGGCCGACGCCGTCTCCGCTCCGTCGCTAGCGCCGCCGATTTCCGACGCCGGAATTTTCTCGGATATCGAGACATTGCCGTTCGGATTCGGCAGCGTCGCCTCCGACGTGTCGCCGTTCGCGATGAACCAGCAGTTTCCGGCGAGTCAATGGGAGATCTCTGGCGGGGGGTATGTAGATCAGACGGCTCACGTTGATCTATCGGGGAATTGTAGATCGAGTAACGTTGGGTTTGGACCGTTTGATTGGCAATCGAACGGAGATCATCAGGCTCTGTTTGATCTTCCCAGCGCCGTTGATCAAGCATACTGGAGTCAACAACATCAATGGACCGATCAAGACCAACCAAATCTGTACCTTCCGTAAATCGCTCCTGTTTAATTTTATTATTACTTTTTTGCTAATTTTAGTATAAATTTAAAGAAAAATCTCTCAATGAAAAAACATCGAAATAGATAAAGAAAATAGAGACGTATAGAGAGAACGTTATTATTATATTATTATTTTCTTTCTATGTAAATCTGGCTATAGCATATTAATTTATTTTTTCAGTATTAGTTTAATTTGTTACCTAATTAAAACTAGAGGGGTACATGGCCTACAATAGGTTAGATTAGGGAATTGTTTTTAGATCGCCATGAATTTCTCATGTCAAAAAAAAAAAAAAACTTAAATATTTAAATGTGTATTTAGGCCCTCATTTATGTAAATGGTCGAATTGATTATAATAATCCAACCGATATTTGCTTTA

Coding sequence (CDS)

ATGCAGGAAATTCACTCGATCGCCGGCGGCAGCCGCTTGTTTTGCGGCGGCGGCGACCGCCGCTTACGGCCGCACCTCCACCACCAAGCCGCCTTGAAGTGCCCAAGATGTGATTCTATAAACACAAAATTCTGTTATTACAATAACTACAATCTTTCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGGAAAACCAAACGCTCCTCCAACTCCAAAACCCACCTCAAATCCACCTCCAATTCCAGCAGCGAAACCTCCAGCCTCGCCGCCACTCCACCGACGGCGGTGGCCGACGCCGTCTCCGCTCCGTCGCTAGCGCCGCCGATTTCCGACGCCGGAATTTTCTCGGATATCGAGACATTGCCGTTCGGATTCGGCAGCGTCGCCTCCGACGTGTCGCCGTTCGCGATGAACCAGCAGTTTCCGGCGAGTCAATGGGAGATCTCTGGCGGGGGGTATGTAGATCAGACGGCTCACGTTGATCTATCGGGGAATTGTAGATCGAGTAACGTTGGGTTTGGACCGTTTGATTGGCAATCGAACGGAGATCATCAGGCTCTGTTTGATCTTCCCAGCGCCGTTGATCAAGCATACTGGAGTCAACAACATCAATGGACCGATCAAGACCAACCAAATCTGTACCTTCCGTAA

Protein sequence

MQEIHSIAGGSRLFCGGGDRRLRPHLHHQAALKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKTHLKSTSNSSSETSSLAATPPTAVADAVSAPSLAPPISDAGIFSDIETLPFGFGSVASDVSPFAMNQQFPASQWEISGGGYVDQTAHVDLSGNCRSSNVGFGPFDWQSNGDHQALFDLPSAVDQAYWSQQHQWTDQDQPNLYLP

Homology

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BLAST of Sed0010538 vs. NCBI nr
Match: XP_022970312.1 (dof zinc finger protein DOF5.4-like [Cucurbita maxima])

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-81
Identity = 186/314 (59.24%), Postives = 204/314 (64.97%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF----CGGGDRRLRPHLHH---QAALKCPRCDSINTKFCYYNNYNLS 60
           MQ IHSIAGG+RLF     GGGDR LRPHLHH     ALKCPRCDS+NTKFCYYNNYNLS
Sbjct: 1   MQGIHSIAGGNRLFGGGGGGGGDRSLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLS 60

Query: 61  QPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT------------HLKSTSNSS 120
           QPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKR+S SK               KSTS+SS
Sbjct: 61  QPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSS 120

Query: 121 SETSSLAATPPTAVA--DAVSAPS---------------------------LAPPISDAG 180
           SE+SSL A   TA A  +AVSAPS                            A P+SD G
Sbjct: 121 SESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPTPSTNTNFEMAAAPVSDCG 180

Query: 181 IFSDI-----------ETLPFGFGSVASDVSPFAMNQQFPASQW---------------E 236
           IFS+I           ETLPFGFG++A D +PF MN QF  +QW               E
Sbjct: 181 IFSEIGSFTSLITSSNETLPFGFGNIA-DATPFGMNHQF-QNQWTPQRMMNVNDELKMQE 240

[Close]

BLAST of Sed0010538 vs. NCBI nr
Match: KAG7021568.1 (Dof zinc finger protein DOF5.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.8 bits (800), Expect = 2.6e-81
Identity = 187/318 (58.81%), Postives = 204/318 (64.15%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF----CGGGDRRLRPHLHH----QAALKCPRCDSINTKFCYYNNYNL 60
           MQ IHSI GGSRLF     GGGDR LRPHLHH      ALKCPRCDS+NTKFCYYNNYNL
Sbjct: 1   MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNL 60

Query: 61  SQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT------------HLKSTSNS 120
           SQPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKR+S SK               KSTS+S
Sbjct: 61  SQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHS 120

Query: 121 SSETSSLAATPPTAVA--DAVSAPS---------------------------LAPPISDA 180
           SSE+SSL A   TA A  +AVSAPS                            A P+SD 
Sbjct: 121 SSESSSLTAATTTAAAATEAVSAPSTSSASTLLTVQDSKLFPTPSTNTNFEMAAAPVSDC 180

Query: 181 GIFSDI-----------ETLPFGFGSVASDVSPFAMNQQFPASQW--------------- 236
           GIFS+I           ETLPFGFG++A D +PFAMN QF  +QW               
Sbjct: 181 GIFSEIGSFTSLITSSNETLPFGFGNIA-DATPFAMNHQF-QNQWTPQRMMNVNDELKMQ 240

[Close]

BLAST of Sed0010538 vs. NCBI nr
Match: XP_022933943.1 (dof zinc finger protein DOF5.4-like [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 4.4e-81
Identity = 186/314 (59.24%), Postives = 203/314 (64.65%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF----CGGGDRRLRPHLHH----QAALKCPRCDSINTKFCYYNNYNL 60
           MQ IHSI GGSRLF     GGGDR LRPHLHH      ALKCPRCDS+NTKFCYYNNYNL
Sbjct: 1   MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNL 60

Query: 61  SQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT------------HLKSTSNS 120
           SQPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKR+S SK               KSTS+S
Sbjct: 61  SQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHS 120

Query: 121 SSETSSLAATPPTAVA--DAVSAPS---------------------------LAPPISDA 180
           SSE+SSL A   TA A  +AVSAPS                            A P+SD 
Sbjct: 121 SSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPNPSINTNFEMAAAPVSDC 180

Query: 181 GIFSDI-----------ETLPFGFGSVASDVSPFAMNQQFPASQW--------------- 236
           GIFS+I           ETLPFGFG++A D +PFAMN Q   +QW               
Sbjct: 181 GIFSEIGSFTSLITSSNETLPFGFGNIA-DATPFAMNHQL-QNQWTPQRMMNVNDELKMQ 240

[Close]

BLAST of Sed0010538 vs. NCBI nr
Match: XP_023531626.1 (dof zinc finger protein DOF5.4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 5.7e-81
Identity = 187/316 (59.18%), Postives = 203/316 (64.24%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF----CGGGDRRLRPHLHH----QAALKCPRCDSINTKFCYYNNYNL 60
           MQ IHSI GGSRLF     GGGDR LRPHLHH      ALKCPRCDS+NTKFCYYNNYNL
Sbjct: 1   MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNL 60

Query: 61  SQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT------------HLKSTSNS 120
           SQPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKR+S SK               KSTS+S
Sbjct: 61  SQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHS 120

Query: 121 SSETSSLAATPPTAVA--DAVSAPS---------------------------LAPPISDA 180
           SSE+SSL A   TA A  +AVSAPS                            A  +SD 
Sbjct: 121 SSESSSLTAATTTAAAATEAVSAPSKSSASTLLTVQDSKLFPNPSTNTNFEMAAATVSDC 180

Query: 181 GIFSDI-----------ETLPFGFGSVASDVSPFAMNQQFPASQW--------------- 236
           GIFS+I           ETLPFGFG++A D +PFAMN QF  +QW               
Sbjct: 181 GIFSEIGSFTSLITSSNETLPFGFGNIA-DATPFAMNHQF-QNQWTPQRMMNVNDELKMQ 240

[Close]

BLAST of Sed0010538 vs. NCBI nr
Match: XP_023516104.1 (dof zinc finger protein DOF5.4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-80
Identity = 188/319 (58.93%), Postives = 206/319 (64.58%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLFCGGGDRRLRPHLHH---QAALKCPRCDSINTKFCYYNNYNLSQPRH 60
           MQ+IHSIAGGSRLF GGGDRRLRPHLHH     ALKCPRCDS+NTKFCYYNNYNLSQPRH
Sbjct: 1   MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRH 60

Query: 61  FCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT--------------------HLKST 120
           FCK CRRYWTKGGVLRNVPVGGGCRKTKRSS+SK+                      KST
Sbjct: 61  FCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSSPDVAATSPPPPPPPPLRERKST 120

Query: 121 SNSSSETSSLAATPPTAVA---DAVSAPSL----------------AP--------PISD 180
           S+SSSE+SSL AT  TA A   +AVSAPS                 AP          +D
Sbjct: 121 SHSSSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFDGAATD 180

Query: 181 AGIFSDI-----------ETLPFGFGSVASDVSPFAMNQQF---PASQW----------- 236
            GIFS+I           ETL FGFG++  DV+PFAMN  F    A+QW           
Sbjct: 181 CGIFSEIGNFTSLITSTNETLAFGFGNM-GDVTPFAMNHPFQNQAANQWPSQRMMNGNDE 240

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BLAST of Sed0010538 vs. ExPASy Swiss-Prot
Match: Q8LDR0 (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.7e-51
Identity = 139/314 (44.27%), Postives = 161/314 (51.27%), Query Frame = 0


Query: 1   MQEIHSIA---------GGSRLF------CGGGDRRLRPH----LHHQAALKCPRCDSIN 60
           MQ+IH  +         GG R F       GGGDRR+R H    L+H  +LKCPRC+S+N
Sbjct: 1   MQDIHDFSMNGVGGGGGGGGRFFGGGIGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLN 60

Query: 61  TKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKTHLKST---- 120
           TKFCYYNNYNLSQPRHFCK CRRYWTKGGVLRNVPVGGGCRK KRS   +    S+    
Sbjct: 61  TKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSSADKP 120

Query: 121 ----------------SNSSSETSSLAATPPTAVADAVS-------APSLAPPI------ 180
                           S+SSSE+SSL A+  T VA AVS       A S+ P        
Sbjct: 121 TTTQDDHHVEEKSSTGSHSSSESSSLTASNSTTVA-AVSVTAAAEVASSVIPGFDMPNMK 180

Query: 181 ----------------SDAGIFSD---------IETLPFGFGSVASDVSPFAMNQQFPAS 236
                           S  G+FS+         IET PFGFG    +       +     
Sbjct: 181 IYGNGIEWSTLLGQGSSAGGVFSEIGGFPAVSAIETTPFGFGGKFVNQDDHLKLEGETVQ 240

[Close]

BLAST of Sed0010538 vs. ExPASy Swiss-Prot
Match: Q6Z345 (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.1e-32
Identity = 104/286 (36.36%), Postives = 127/286 (44.41%), Query Frame = 0


Query: 1   MQEIHSIAG-GSRLFCGGGDRRLRPHLHHQA------------ALKCPRCDSINTKFCYY 60
           MQE  SI G   RLF G     +R     Q             A+KCPRC+S NTKFCYY
Sbjct: 1   MQEFQSIPGLAGRLFGGAAAADIRRAQAQQGPASRCGGIPSPEAVKCPRCESTNTKFCYY 60

Query: 61  NNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNS-------KTHLKSTSNS 120
           NNYNLSQPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKRS +S        T   +T N+
Sbjct: 61  NNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSGSSSAASSAPSTPTAATDNA 120

Query: 121 SSETSSLAATP-----------PTAVADAVSAPSLAPPISDAGIFSDIETLPFGFGSVAS 180
            ++  + A++P           PTA A         P  +   + +   T         +
Sbjct: 121 KNQRRASASSPRSSSGGSGNTSPTAAAATTPTTPATPSSNTIAVINHATTTTTTTNPFPT 180

Query: 181 DVSP---------------FAMNQQFPASQWEISGGGYV-DQTAHVDLSGNCRSSNVG-- 236
           DV P               FA     P   +  +      D  A V L+G   +      
Sbjct: 181 DVPPPAPIFADQAAALASLFAPPPPPPLPVFSFAAQAKTEDGIASVLLAGQTTAPTAATV 240

[Close]

BLAST of Sed0010538 vs. ExPASy Swiss-Prot
Match: Q9ZV33 (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 29  QAALKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSS 88
           + ALKCPRCDS NTKFCY+NNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ K+  
Sbjct: 91  EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 150

Query: 89  NSKTHLKSTSNSSSETSSLAATPPT 114
           +  +   S+S +   TS + AT PT
Sbjct: 151 SGNSKSSSSSQNKQSTSMVNATSPT 175

[Close]

BLAST of Sed0010538 vs. ExPASy Swiss-Prot
Match: Q8L9V6 (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-27
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 32  LKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSK 91
           LKCPRCDS NTKFCYYNNYNL+QPRHFCKGCRRYWT+GG LRNVPVGGGCR+  +   + 
Sbjct: 77  LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKN- 136

Query: 92  THLKSTSNSSSETSSLAATPPTA 115
            +LKS+S+SS ++SS+ A  P++
Sbjct: 137 GNLKSSSSSSKQSSSVNAQSPSS 158

[Close]

BLAST of Sed0010538 vs. ExPASy Swiss-Prot
Match: Q94AR6 (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-27
Identity = 61/91 (67.03%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 23  RPHLHHQAALKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCR 82
           +P    Q  LKCPRCDS NTKFCYYNNYNLSQPRHFCK CRRYWTKGG LRNVPVGGG R
Sbjct: 20  QPQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSR 79

Query: 83  K--TKRSSNSKTHLKSTSNSSSETSSLAATP 112
           K  TKRS++S +   S SNSS    +    P
Sbjct: 80  KNATKRSTSSSSSASSPSNSSQNKKTKNPDP 110

[Close]

BLAST of Sed0010538 vs. ExPASy TrEMBL
Match: A0A6J1HYR7 (dof zinc finger protein DOF5.4-like OS=Cucurbita maxima OX=3661 GN=LOC111469312 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 9.5e-82
Identity = 186/314 (59.24%), Postives = 204/314 (64.97%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF----CGGGDRRLRPHLHH---QAALKCPRCDSINTKFCYYNNYNLS 60
           MQ IHSIAGG+RLF     GGGDR LRPHLHH     ALKCPRCDS+NTKFCYYNNYNLS
Sbjct: 1   MQGIHSIAGGNRLFGGGGGGGGDRSLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLS 60

Query: 61  QPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT------------HLKSTSNSS 120
           QPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKR+S SK               KSTS+SS
Sbjct: 61  QPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSS 120

Query: 121 SETSSLAATPPTAVA--DAVSAPS---------------------------LAPPISDAG 180
           SE+SSL A   TA A  +AVSAPS                            A P+SD G
Sbjct: 121 SESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPTPSTNTNFEMAAAPVSDCG 180

Query: 181 IFSDI-----------ETLPFGFGSVASDVSPFAMNQQFPASQW---------------E 236
           IFS+I           ETLPFGFG++A D +PF MN QF  +QW               E
Sbjct: 181 IFSEIGSFTSLITSSNETLPFGFGNIA-DATPFGMNHQF-QNQWTPQRMMNVNDELKMQE 240

[Close]

BLAST of Sed0010538 vs. ExPASy TrEMBL
Match: A0A6J1F696 (dof zinc finger protein DOF5.4-like OS=Cucurbita moschata OX=3662 GN=LOC111441205 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.1e-81
Identity = 186/314 (59.24%), Postives = 203/314 (64.65%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF----CGGGDRRLRPHLHH----QAALKCPRCDSINTKFCYYNNYNL 60
           MQ IHSI GGSRLF     GGGDR LRPHLHH      ALKCPRCDS+NTKFCYYNNYNL
Sbjct: 1   MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNL 60

Query: 61  SQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT------------HLKSTSNS 120
           SQPRHFCK CRRYWTKGGVLRNVPVGGGCRKTKR+S SK               KSTS+S
Sbjct: 61  SQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHS 120

Query: 121 SSETSSLAATPPTAVA--DAVSAPS---------------------------LAPPISDA 180
           SSE+SSL A   TA A  +AVSAPS                            A P+SD 
Sbjct: 121 SSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPNPSINTNFEMAAAPVSDC 180

Query: 181 GIFSDI-----------ETLPFGFGSVASDVSPFAMNQQFPASQW--------------- 236
           GIFS+I           ETLPFGFG++A D +PFAMN Q   +QW               
Sbjct: 181 GIFSEIGSFTSLITSSNETLPFGFGNIA-DATPFAMNHQL-QNQWTPQRMMNVNDELKMQ 240

[Close]

BLAST of Sed0010538 vs. ExPASy TrEMBL
Match: A0A6J1E400 (dof zinc finger protein DOF5.4-like OS=Cucurbita moschata OX=3662 GN=LOC111429734 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 6.2e-81
Identity = 188/321 (58.57%), Postives = 206/321 (64.17%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLFCGGGDRRLRPHLHH---QAALKCPRCDSINTKFCYYNNYNLSQPRH 60
           MQ+IHSIAGGSRLF GGGDRRLRPHLHH     ALKCPRCDS+NTKFCYYNNYNLSQPRH
Sbjct: 1   MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRH 60

Query: 61  FCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT--------------------HLKST 120
           FCK CRRYWTKGGVLRNVPVGGGCRKTKRSS+SK+                      KST
Sbjct: 61  FCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSTPDVAATSPPSPPPPRLRERKST 120

Query: 121 SNSSSETSSLAATPPTAVA---DAVSAPSL----------------AP--------PISD 180
           S+SSSE+SSL AT  TA A   +AVSAPS                 AP          +D
Sbjct: 121 SHSSSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFEGAATD 180

Query: 181 AGIFSDI-----------ETLPFGFGSVASDVSPFAMNQQF---PASQW----------- 236
            GIFS+I           ETL FGFG++  DV+PFAMN  F    A+QW           
Sbjct: 181 CGIFSEIGNFTSLITSTNETLAFGFGNM-GDVTPFAMNHPFQNQAANQWPSQRMMNGNDE 240

[Close]

BLAST of Sed0010538 vs. ExPASy TrEMBL
Match: A0A6J1JIZ9 (dof zinc finger protein DOF5.4-like OS=Cucurbita maxima OX=3661 GN=LOC111484876 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.6e-79
Identity = 185/319 (57.99%), Postives = 202/319 (63.32%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLFCGGGDRRLRPHLHH---QAALKCPRCDSINTKFCYYNNYNLSQPRH 60
           MQ+IHSIAGGSRLF GGGDRRLRPHLHH     ALKCPRCDS+NTKFCYYNNYNLSQPRH
Sbjct: 1   MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRH 60

Query: 61  FCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSK-----------------THLKSTSNS 120
           FCK CRRYWTKGGVLRNVPVGGGCRKTKRSS+S                     KSTS+S
Sbjct: 61  FCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSSKSTPDVATTSPPPPPPLRERKSTSHS 120

Query: 121 SSETSSLAATPPTAVA---DAVSAPS---------------------------LAPPISD 180
           SSE+SSL AT  TA A   +AVSAPS                            A   +D
Sbjct: 121 SSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFEGAAGAGTD 180

Query: 181 AGIFSDI-----------ETLPFGFGSVASDVSPFAMNQQF---PASQW----------- 236
            GIFS+I           ETL FGFG++  DV+PFAMN  F    A+QW           
Sbjct: 181 CGIFSEIGNFTSLITSSNETLAFGFGNM-GDVTPFAMNHPFQNQAANQWPSQRMMNGNDE 240

[Close]

BLAST of Sed0010538 vs. ExPASy TrEMBL
Match: A0A5A7UTG5 (Dof zinc finger protein DOF5.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003220 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74
Identity = 181/339 (53.39%), Postives = 201/339 (59.29%), Query Frame = 0


Query: 1   MQEIHSIAGGSRLF--CGGGDRRLRPHLHH---QAALKCPRCDSINTKFCYYNNYNLSQP 60
           MQ+IHSIAGGSRLF   GGGDRRLRPHLHH     ALKCPRCDS+NTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKT----------------------- 120
           RHFCK CRRYWTKGGVLRNVPVGGGCRKTKRSS+SK+                       
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLP 120

Query: 121 --HLKSTSNSSSETSSLAATPPTA--VADAVSAPSLAP---------------------- 180
               KSTS+SSSE+SSL AT  TA    +AVSAPS                         
Sbjct: 121 PRDRKSTSHSSSESSSLTATTTTAAVATEAVSAPSSNSASALLNVHDTKLFTGSSTTNTN 180

Query: 181 ---PISDAGIFSDI-----------ETLPFGFGSVASDVSPFAMN-----QQFPASQW-- 236
               + D GIFS+I           ETLPFGFG++A DV+ FAMN     Q   A+QW  
Sbjct: 181 PNFEVPDCGIFSEIGSFTSLITSSNETLPFGFGNMA-DVTAFAMNNHHQFQNQTANQWPP 240

[Close]

BLAST of Sed0010538 vs. TAIR 10
Match: AT5G60850.1 (OBF binding protein 4 )

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-52
Identity = 139/314 (44.27%), Postives = 161/314 (51.27%), Query Frame = 0


Query: 1   MQEIHSIA---------GGSRLF------CGGGDRRLRPH----LHHQAALKCPRCDSIN 60
           MQ+IH  +         GG R F       GGGDRR+R H    L+H  +LKCPRC+S+N
Sbjct: 1   MQDIHDFSMNGVGGGGGGGGRFFGGGIGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLN 60

Query: 61  TKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSKTHLKST---- 120
           TKFCYYNNYNLSQPRHFCK CRRYWTKGGVLRNVPVGGGCRK KRS   +    S+    
Sbjct: 61  TKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSSADKP 120

Query: 121 ----------------SNSSSETSSLAATPPTAVADAVS-------APSLAPPI------ 180
                           S+SSSE+SSL A+  T VA AVS       A S+ P        
Sbjct: 121 TTTQDDHHVEEKSSTGSHSSSESSSLTASNSTTVA-AVSVTAAAEVASSVIPGFDMPNMK 180

Query: 181 ----------------SDAGIFSD---------IETLPFGFGSVASDVSPFAMNQQFPAS 236
                           S  G+FS+         IET PFGFG    +       +     
Sbjct: 181 IYGNGIEWSTLLGQGSSAGGVFSEIGGFPAVSAIETTPFGFGGKFVNQDDHLKLEGETVQ 240

[Close]

BLAST of Sed0010538 vs. TAIR 10
Match: AT2G28810.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 124.8 bits (312), Expect = 9.3e-29
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 29  QAALKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSS 88
           + ALKCPRCDS NTKFCY+NNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ K+  
Sbjct: 91  EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 150

Query: 89  NSKTHLKSTSNSSSETSSLAATPPT 114
           +  +   S+S +   TS + AT PT
Sbjct: 151 SGNSKSSSSSQNKQSTSMVNATSPT 175

[Close]

BLAST of Sed0010538 vs. TAIR 10
Match: AT2G28810.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 124.8 bits (312), Expect = 9.3e-29
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 29  QAALKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSS 88
           + ALKCPRCDS NTKFCY+NNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ K+  
Sbjct: 74  EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 133

Query: 89  NSKTHLKSTSNSSSETSSLAATPPT 114
           +  +   S+S +   TS + AT PT
Sbjct: 134 SGNSKSSSSSQNKQSTSMVNATSPT 158

[Close]

BLAST of Sed0010538 vs. TAIR 10
Match: AT1G07640.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-28
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 32  LKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSK 91
           LKCPRCDS NTKFCYYNNYNL+QPRHFCKGCRRYWT+GG LRNVPVGGGCR+  +   + 
Sbjct: 77  LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKN- 136

Query: 92  THLKSTSNSSSETSSLAATPPTA 115
            +LKS+S+SS ++SS+ A  P++
Sbjct: 137 GNLKSSSSSSKQSSSVNAQSPSS 158

[Close]

BLAST of Sed0010538 vs. TAIR 10
Match: AT1G07640.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-28
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 32  LKCPRCDSINTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKTKRSSNSK 91
           LKCPRCDS NTKFCYYNNYNL+QPRHFCKGCRRYWT+GG LRNVPVGGGCR+  +   + 
Sbjct: 21  LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKN- 80

Query: 92  THLKSTSNSSSETSSLAATPPTA 115
            +LKS+S+SS ++SS+ A  P++
Sbjct: 81  GNLKSSSSSSKQSSSVNAQSPSS 102

The following BLAST results are available for this feature:

BLAST of Sed0010538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970312.1	2.0e-81	59.24	dof zinc finger protein DOF5.4-like [Cucurbita maxima]	[more]
KAG7021568.1	2.6e-81	58.81	Dof zinc finger protein DOF5.4, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022933943.1	4.4e-81	59.24	dof zinc finger protein DOF5.4-like [Cucurbita moschata]	[more]
XP_023531626.1	5.7e-81	59.18	dof zinc finger protein DOF5.4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023516104.1	1.3e-80	58.93	dof zinc finger protein DOF5.4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0010538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDR0	1.7e-51	44.27	Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV...	[more]
Q6Z345	5.1e-32	36.36	Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 ...	[more]
Q9ZV33	1.3e-27	64.71	Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV...	[more]
Q8L9V6	4.9e-27	68.67	Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV...	[more]
Q94AR6	4.9e-27	67.03	Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV...	[more]

BLAST of Sed0010538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYR7	9.5e-82	59.24	dof zinc finger protein DOF5.4-like OS=Cucurbita maxima OX=3661 GN=LOC111469312 ...	[more]
A0A6J1F696	2.1e-81	59.24	dof zinc finger protein DOF5.4-like OS=Cucurbita moschata OX=3662 GN=LOC11144120...	[more]
A0A6J1E400	6.2e-81	58.57	dof zinc finger protein DOF5.4-like OS=Cucurbita moschata OX=3662 GN=LOC11142973...	[more]
A0A6J1JIZ9	2.6e-79	57.99	dof zinc finger protein DOF5.4-like OS=Cucurbita maxima OX=3661 GN=LOC111484876 ...	[more]
A0A5A7UTG5	1.5e-74	53.39	Dof zinc finger protein DOF5.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Sed0010538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60850.1	1.2e-52	44.27	OBF binding protein 4	[more]
AT2G28810.1	9.3e-29	64.71	Dof-type zinc finger DNA-binding family protein	[more]
AT2G28810.2	9.3e-29	64.71	Dof-type zinc finger DNA-binding family protein	[more]
AT1G07640.2	3.5e-28	68.67	Dof-type zinc finger DNA-binding family protein	[more]
AT1G07640.1	3.5e-28	68.67	Dof-type zinc finger DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 30..86 e-value: 3.9E-33 score: 113.4
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 34..70
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 32..86 score: 29.468975
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..109
None	No IPR available	PANTHER	PTHR31992:SF205	DOF ZINC FINGER PROTEIN 4	coord: 17..159
None	No IPR available	PANTHER	PTHR31992	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	coord: 17..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010538.1	Sed0010538.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding