Sed0010528 (gene) Chayote v1

Overview


Name	Sed0010528
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GATA type zinc finger transcription factor family protein
Location	LG07: 41000515 .. 41003534 (-)
RNA-Seq Expression	Sed0010528
Synteny	Sed0010528

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAGAGTTCGGCTGTAAAATCGCCCAAAAGTGAAATCAGAAAAACAAAAACAAAACGACACGTCGTTACTCTGCACGACGCCAATGGGTGGAGCTCCGGTACTGAAAAAGGGCGAAAGAAGAAAATCGCAGCGGGACGGACGGAGTAAAGTTTAAGCAATCGTTCCGGCAAAGATATTTTCTCCGACCCCTTTTCACTTTATCACTTTTTTATTCCTATAAACAAATTCCACGCTGTGAATCATCAATCTCTCTTAAATTATTTGTTTCTGATTTCCACTATTTCTTTCATTTCGCCTAAACACAATCCTTACATCCTTGATTTGAGGTACCCATCTTTGATTTCGATTGCATGATCAACATCTTTGTAATTGTTTCACCATTCTGGGTCTGGTCTGGTCTGGTCGTTTTCTTTAATAGATTTTGAAGTTGTAAGCTTAAGGGTTAGATTTTTAGAGATTTTTAGATCTTTGAATGCAGCTTCTTTTTTGTTTTATTATGTTTTTATTTCTGAATTTGATTCTGGGTTTTTGTGCTCTGAATGTGTTTGATGAAATGTCAATAGGGAAAGGGCAGTTTGTTTGATTGGGATTGATTGTTGGGGTTTGTCAGATCTCTACTTTAAGGCTTAGCTATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTGGATGAGTTATCTGCTGATGGAGTTGCTTTCCACAACTCGTGTTTTAAATGCAGCCATTGCAAAGGGACTTTAAAGGTACATAGATATTTTCAGGACTCATTTATTGCTTCTCCTTTTTTTTTTTTATCCTTGAAATCTTTAATTTTCTTGCCACGCTTTTATTCCAAAGTCAATAGAAACCCGGATCTATAAGCTCAAAGATTGTAGGGAGAATCTGTCTGAAGTCTATTTTCAAAATAATAATGATCAAGTTGTCCCGAAGGGGTCGCATTTTGAAGGGGTGTTCACTTCAAGGTCTCAAGTTCGAGACTCATTGTGACATTTTGCAGACACCTCTCGGATCTTCGTTTTTTCGATGTCTCTCAGTGCCTGACTGCGTGGTTTGTTTTTTCGATATCTCCCGGTGCCTGACGGCGTGGTTACCCCAGTTATAGTGGTGGAAAGCACTGATTTAAAAAAATAAATAAATGACAATGATCAAATGATTCCGTTACTGTTTTCCTATAGATGACATGTTCTTCTGAACAACTAAAGTTGTTTTTTCTCCCACATGAATCATAACTTTAGAAGCCATTTACTCACAGACAATCTTGATTAAGAAAACAGAAAACAACCTCCCAAACAAGTTTTTAGTTTCATTTATCAGCTCTCCTCTCTCATAGCCATTGCTTATAGAACCGCCTTCTCACACACTCTCTCTCTCTCTCTCTCTCTCTCCTGTAGAGGATTTTCATGAACAATTAAAGTACCGGGTGGTGTTTAAAAGTAAAAACCAAAGACATTAACTCCAGCTTATGTAACATGAATACTGAGCTTTTATCTGGGTCAGAATGTGAGAACTTTTCTGAAATGGCTTGTCAAATGCTTTCACCTGAGTAATTACTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTTTTCAAGGAAACAGGAAACTTCAGCAAGAACTTTCTATCTCGTATGTTTCAAACATTGCCAAATTTTGAAGACATTCTACATTTGACCTTTTAGCTATTACTTTTTACTAACATTTTCTATATTTTTCTTTTTCTACAGCTGCAAAAGTCGCCGATAAGCCAACCCCAGAACTGGTATATTTAACCCCAATGCTGCAACTAGATGTGATTAAATTTATAAGAATTCGCTCATCTCATAGCCTCTTGTTGATTCCAGACTAGGTCACCAAGCAAAGCTGCCAGTATGTTCTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAGACAACGTTAGAGAGATATTCAAACATTTTAAACCTGCTTAATAGCGCCAGTTTATCAGATAACATGGGTTTCCATCTCATAATGAATTTGATCATGAGTGAAGTAGTACATCTATGTTATAAATGTTGGGAGGTTTCTTCACCTTTAAAATGTGGGGTCTTCAACACAATTGTTCATTATCTCACTCACTCTTTCCAAATCACGTGCATATATATGATGCACTCAATTATCATTTTTATGGGGTTTGAGTTTATGTCATGTAATACTACTTTCGACATTTACATATCGACCTCTAAAGCAAAGGAGCATTCCTTAAAGCTACAACATTTCAGTGAGGCATTTACATATCTTGTAACGGCTTGAATTTGGCTCTTTTTTGAGCCAACTAGTGATCTGTTGAATTCGAGGAACGGTGGGAAAGTACTCAATTGCTTATTCTATAGTCTTTACTTGTGAGGCATTAATGGTTCCATCTAATTTTCAAGTAGATTTGCTGCTGTTTTCCGTTGAATGCATCTATGAAGACGTTATTTTAATGGATCGTGGTCATTGCTTGTATTCAGGTGACTGTTGAGAGCCAAGCCTATCACAAGTCGTGTTTTAAATGCTCGCACGGTGGCTGTTCTTTATCCCCATCAAACTATGCTGCTCTTGATGGAATTTTGTACTGCAAACATCATTTCTCACAGCTTTTCAAGGAAAAGGGAAGCTACAATCATCTGATCAAGTCTGCATCAATGAAGCGCCAAGCAGCAACTTCTGATCCAGATGCGAAGGTCGAGGCGTAAACTTCCTTTTTTGCGGTTTTGTCGAGTTCATTTTTCTTTTGCTCTCCCTCTTCCCTGTGTTTTCTGCTTTGATTCTCACGGTTTCGTGGTGGGAAACAAAAACGTAACTTGCACGAGTTTACAGCTCGTCATGCTGAGCAAATTGTTTGTATGCTTGATTCATGGAACTTCAAACAAACCATTCGAAAGTTGGCACTGATTTGCCTGAAGTTTATGAAAGGATCTTGTTTTGGGTTACCACAAGAGATATGT

mRNA sequence

GGTAGAGTTCGGCTGTAAAATCGCCCAAAAGTGAAATCAGAAAAACAAAAACAAAACGACACGTCGTTACTCTGCACGACGCCAATGGGTGGAGCTCCGGTACTGAAAAAGGGCGAAAGAAGAAAATCGCAGCGGGACGGACGGAGTAAAGTTTAAGCAATCGTTCCGGCAAAGATATTTTCTCCGACCCCTTTTCACTTTATCACTTTTTTATTCCTATAAACAAATTCCACGCTGTGAATCATCAATCTCTCTTAAATTATTTGTTTCTGATTTCCACTATTTCTTTCATTTCGCCTAAACACAATCCTTACATCCTTGATTTGAGGGAAAGGGCAGTTTGTTTGATTGGGATTGATTGTTGGGGTTTGTCAGATCTCTACTTTAAGGCTTAGCTATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTGGATGAGTTATCTGCTGATGGAGTTGCTTTCCACAACTCGTGTTTTAAATGCAGCCATTGCAAAGGGACTTTAAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTTTTCAAGGAAACAGGAAACTTCAGCAAGAACTTTCTATCTCCTGCAAAAGTCGCCGATAAGCCAACCCCAGAACTGACTAGGTCACCAAGCAAAGCTGCCAGTATGTTCTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACTGTTGAGAGCCAAGCCTATCACAAGTCGTGTTTTAAATGCTCGCACGGTGGCTGTTCTTTATCCCCATCAAACTATGCTGCTCTTGATGGAATTTTGTACTGCAAACATCATTTCTCACAGCTTTTCAAGGAAAAGGGAAGCTACAATCATCTGATCAAGTCTGCATCAATGAAGCGCCAAGCAGCAACTTCTGATCCAGATGCGAAGGTCGAGGCGTAAACTTCCTTTTTTGCGGTTTTGTCGAGTTCATTTTTCTTTTGCTCTCCCTCTTCCCTGTGTTTTCTGCTTTGATTCTCACGGTTTCGTGGTGGGAAACAAAAACGTAACTTGCACGAGTTTACAGCTCGTCATGCTGAGCAAATTGTTTGTATGCTTGATTCATGGAACTTCAAACAAACCATTCGAAAGTTGGCACTGATTTGCCTGAAGTTTATGAAAGGATCTTGTTTTGGGTTACCACAAGAGATATGT

Coding sequence (CDS)

ATGCAGCCATTGCAAAGGGACTTTAAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTTTTCAAGGAAACAGGAAACTTCAGCAAGAACTTTCTATCTCCTGCAAAAGTCGCCGATAAGCCAACCCCAGAACTGACTAGGTCACCAAGCAAAGCTGCCAGTATGTTCTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACTGTTGAGAGCCAAGCCTATCACAAGTCGTGTTTTAAATGCTCGCACGGTGGCTGTTCTTTATCCCCATCAAACTATGCTGCTCTTGATGGAATTTTGTACTGCAAACATCATTTCTCACAGCTTTTCAAGGAAAAGGGAAGCTACAATCATCTGATCAAGTCTGCATCAATGAAGCGCCAAGCAGCAACTTCTGATCCAGATGCGAAGGTCGAGGCGTAA

Protein sequence

MQPLQRDFKGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMKRQAATSDPDAKVEA

Homology

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BLAST of Sed0010528 vs. NCBI nr
Match: XP_004150238.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_031741833.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN50627.1 hypothetical protein Csa_021390 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 10  GVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGK 69
           GVLYCKPHFEQLFKETGNFSKNFLSPAK ++KPTPELTRSPSKAASMFSGTQEKCATCGK
Sbjct: 54  GVLYCKPHFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGK 113

Query: 70  TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 129
           TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL
Sbjct: 114 TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 173

Query: 130 IKSASMKRQAATSDPD-AKVEA 151
           IKSASMKRQAATSDPD +KVE+
Sbjct: 174 IKSASMKRQAATSDPDPSKVES 195

[Close]

BLAST of Sed0010528 vs. NCBI nr
Match: XP_023549082.1 (LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549090.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549098.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549105.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549115.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKETGNFSKNFLSPAK ADKPTPELTRSPSKAA MFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPD-AKVE 150
           LIKSASMKRQAA SDPD +KVE
Sbjct: 173 LIKSASMKRQAAISDPDTSKVE 194

[Close]

BLAST of Sed0010528 vs. NCBI nr
Match: XP_022156896.1 (LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156898.1 LIM domain-containing protein WLIM2b-like [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKETGNFSKNFLSPAK  DKPTPELTRSPSKAASMFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPDAK 148
           LIKSASMKRQAATS PDA+
Sbjct: 173 LIKSASMKRQAATSVPDAE 191

[Close]

BLAST of Sed0010528 vs. NCBI nr
Match: XP_022996549.1 (LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996568.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996576.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996583.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima])

HSP 1 Score: 278.5 bits (711), Expect = 3.4e-71
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKETGNFSKNFLSPAK ADKPTPEL RSPSKAA MFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPDA-KVE 150
           LIKSASMKRQAATSDP+A KVE
Sbjct: 173 LIKSASMKRQAATSDPNASKVE 194

[Close]

BLAST of Sed0010528 vs. NCBI nr
Match: XP_038891809.1 (LIM domain-containing protein WLIM2b-like [Benincasa hispida] >XP_038891810.1 LIM domain-containing protein WLIM2b-like [Benincasa hispida] >XP_038891811.1 LIM domain-containing protein WLIM2b-like [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKETGNFSKNFLSPAK ++KPTPELTRSPSKAASMFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPD-AKVEA 151
           LIKSASMKRQAATSD D +KVE+
Sbjct: 173 LIKSASMKRQAATSDLDPSKVES 195

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BLAST of Sed0010528 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.0e-62
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE+G+F+KNF SPAK ADK TPELTR+PS+ A  FSGTQEKCATC 
Sbjct: 53  EGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCS 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNH
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATS 143
           LIKSAS+KR AA +
Sbjct: 173 LIKSASIKRSAAAA 186

[Close]

BLAST of Sed0010528 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.8e-60
Identity = 109/143 (76.22%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAK-VADKPTPELTRSPSKAASMFSGTQEKCATC 68
           +GV+YC+PHFEQLFKE+G+FSKNF SPAK + DKPTPEL R+PS+ A MFSGTQ+KCATC
Sbjct: 53  EGVVYCRPHFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATC 112

Query: 69  GKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYN 128
            KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYN
Sbjct: 113 TKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYN 172

Query: 129 HLIKSASMKRQAATSDPDAKVEA 151
           HLIKSAS+KR  A +   A   A
Sbjct: 173 HLIKSASIKRATAAATAAAAAVA 195

[Close]

BLAST of Sed0010528 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.1e-47
Identity = 86/133 (64.66%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 10  GVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGK 69
           GVLYCKPHFEQLFKE+GN+SKNF   A   +KP   LTR+PSK +S FSGTQ+KCATC K
Sbjct: 54  GVLYCKPHFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKK 113

Query: 70  TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 129
           T YPLEKVT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+
Sbjct: 114 TVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 173

Query: 130 IKSASMKRQAATS 143
            ++A+  R++A+S
Sbjct: 174 HQAAANHRRSASS 184

[Close]

BLAST of Sed0010528 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 84/124 (67.74%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 10  GVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGK 69
           GVLYCK HFEQLFKETG+FSK F    +  DK   EL R+PSK  S FSGTQ+KCA C K
Sbjct: 54  GVLYCKTHFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQK 113

Query: 70  TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 129
           T YPLEK+T+E ++YHKSCFKCSHGGC L+ S+YAAL+G+LYCK HF QLF EKGSYNH+
Sbjct: 114 TVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHM 173

Query: 130 IKSA 134
            K +
Sbjct: 174 KKKS 174

[Close]

BLAST of Sed0010528 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 80/131 (61.07%), Postives = 107/131 (81.68%), Query Frame = 0


Query: 10  GVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGK 69
           GVLYCK HFEQLFKE+GNFSKNF  P K      PELTR+PSK +S+F GTQ+KCA C K
Sbjct: 54  GVLYCKTHFEQLFKESGNFSKNF-QPGKT---EKPELTRTPSKISSIFCGTQDKCAACEK 113

Query: 70  TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 129
           T YPLEK+ +E + +HK+CF+C+HGGC+L+ S+YA+LD +LYC+HHF+QLF EKG+Y H+
Sbjct: 114 TVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHV 173

Query: 130 IKSASMKRQAA 141
           +++A+ +R A+
Sbjct: 174 LQAANHRRTAS 180

[Close]

BLAST of Sed0010528 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.7e-72
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 10  GVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGK 69
           GVLYCKPHFEQLFKETGNFSKNFLSPAK ++KPTPELTRSPSKAASMFSGTQEKCATCGK
Sbjct: 54  GVLYCKPHFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGK 113

Query: 70  TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 129
           TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL
Sbjct: 114 TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 173

Query: 130 IKSASMKRQAATSDPD-AKVEA 151
           IKSASMKRQAATSDPD +KVE+
Sbjct: 174 IKSASMKRQAATSDPDPSKVES 195

[Close]

BLAST of Sed0010528 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKETGNFSKNFLSPAK  DKPTPELTRSPSKAASMFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPDAK 148
           LIKSASMKRQAATS PDA+
Sbjct: 173 LIKSASMKRQAATSVPDAE 191

[Close]

BLAST of Sed0010528 vs. ExPASy TrEMBL
Match: A0A6J1KBB9 (LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC111491761 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKETGNFSKNFLSPAK ADKPTPEL RSPSKAA MFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPDA-KVE 150
           LIKSASMKRQAATSDP+A KVE
Sbjct: 173 LIKSASMKRQAATSDPNASKVE 194

[Close]

BLAST of Sed0010528 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.1e-70
Identity = 133/142 (93.66%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 10  GVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCGK 69
           GVLYCKPHFEQLFKETGNFSKNFLSPAK ++KPTPELTRSPS+AASMFSGTQEKCATCGK
Sbjct: 54  GVLYCKPHFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGK 113

Query: 70  TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHL 129
           TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAAL+GILYCKHHFSQLFKEKGSYNHL
Sbjct: 114 TAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHL 173

Query: 130 IKSASMKRQAATSDPD-AKVEA 151
           IKSASMKRQAATSD D +KVE+
Sbjct: 174 IKSASMKRQAATSDSDPSKVES 195

[Close]

BLAST of Sed0010528 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE GNFSKNFLS AK ++KPTPELTRSPSKAASMFSGTQEKCATCG
Sbjct: 53  EGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCG 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH
Sbjct: 113 KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATSDPD-AKVE 150
           LIKSA MKRQ ATSDPD +KVE
Sbjct: 173 LIKSALMKRQVATSDPDTSKVE 194

[Close]

BLAST of Sed0010528 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-63
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE+G+F+KNF SPAK ADK TPELTR+PS+ A  FSGTQEKCATC 
Sbjct: 53  EGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCS 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNH
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATS 143
           LIKSAS+KR AA +
Sbjct: 173 LIKSASIKRSAAAA 186

[Close]

BLAST of Sed0010528 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-63
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE+G+F+KNF SPAK ADK TPELTR+PS+ A  FSGTQEKCATC 
Sbjct: 53  EGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCS 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNH
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATS 143
           LIKSAS+KR AA +
Sbjct: 173 LIKSASIKRSAAAA 186

[Close]

BLAST of Sed0010528 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-63
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE+G+F+KNF SPAK ADK TPELTR+PS+ A  FSGTQEKCATC 
Sbjct: 53  EGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCS 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNH
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATS 143
           LIKSAS+KR AA +
Sbjct: 173 LIKSASIKRSAAAA 186

[Close]

BLAST of Sed0010528 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-63
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE+G+F+KNF SPAK ADK TPELTR+PS+ A  FSGTQEKCATC 
Sbjct: 53  EGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCS 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNH
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATS 143
           LIKSAS+KR AA +
Sbjct: 173 LIKSASIKRSAAAA 186

[Close]

BLAST of Sed0010528 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-63
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGVLYCKPHFEQLFKETGNFSKNFLSPAKVADKPTPELTRSPSKAASMFSGTQEKCATCG 68
           +GVLYCKPHFEQLFKE+G+F+KNF SPAK ADK TPELTR+PS+ A  FSGTQEKCATC 
Sbjct: 53  EGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCS 112

Query: 69  KTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNH 128
           KT YP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNH
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNH 172

Query: 129 LIKSASMKRQAATS 143
           LIKSAS+KR AA +
Sbjct: 173 LIKSASIKRSAAAA 186

The following BLAST results are available for this feature:

BLAST of Sed0010528 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150238.1	1.2e-71	95.77	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_031741833.1 LIM domai...	[more]
XP_023549082.1	2.0e-71	95.77	LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_02354...	[more]
XP_022156896.1	2.6e-71	96.40	LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 ...	[more]
XP_022996549.1	3.4e-71	95.77	LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM...	[more]
XP_038891809.1	1.3e-70	94.41	LIM domain-containing protein WLIM2b-like [Benincasa hispida] >XP_038891810.1 LI...	[more]

BLAST of Sed0010528 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	3.0e-62	82.09	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	4.8e-60	76.22	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	6.1e-47	64.66	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q7F9R9	1.3e-44	67.74	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q1ECF5	2.8e-44	61.07	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of Sed0010528 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF5	5.7e-72	95.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1	[more]
A0A6J1DT64	1.3e-71	96.40	LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1KBB9	1.7e-71	95.77	LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A1S3CIM8	3.1e-70	93.66	LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141...	[more]
A0A6J1GYT7	2.0e-69	92.96	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]

BLAST of Sed0010528 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	2.1e-63	82.09	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	2.1e-63	82.09	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	2.1e-63	82.09	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	2.1e-63	82.09	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	2.1e-63	82.09	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 63..115 e-value: 4.7E-12 score: 56.0
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 64..119 e-value: 7.9E-11 score: 42.0
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 62..122 score: 12.5434
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 58..128 e-value: 6.1E-20 score: 73.2
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 8..142
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 8..142
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 64..124 e-value: 2.85419E-38 score: 122.579
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 8..32
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 90..129
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 56..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010528.1	Sed0010528.1	mRNA
Sed0010528.2	Sed0010528.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding