Sed0010508 (gene) Chayote v1

Overview


Name	Sed0010508
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein BIC1-like
Location	LG10: 13742030 .. 13742766 (+)
RNA-Seq Expression	Sed0010508
Synteny	Sed0010508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAACATAAATCTCTTCAAACTCTCAATAACCAAACCTCCAACCCTAAAATCTCCATTTTTTCCATTTTGCAACAAACCCACATCCCAAATCTTCATAAAGCTTCAATCTTTACCAAAACCCACAAGAAATAATGACTCTCCAAAACCCCCCTCTCAAACCCACTTCATCAATTTTACCACATAGCCAAGAATCAGATCTAAAGAGCGATGATCAGAGCCTTGACACTGCCGCCGTGGAGGCAGAGGAGAGCGGGCTGGAGCGGCTAAAGCGCCACCGGGTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAGAAATGGGGGAAGGAGGAGCTTTTGAAGGATTGGATCGACGGCTCCGCATTTGAAGCTTCTCTGTTTCCTTCTGGGGTTGTAACGGCTCGCCGGGCTTTGGCCCGAGAAGCTAAGAGAACGTCGCCAAATAACAACTCTACCGCCACCGCCGGAGCTTTGACAGTATTGAACAGTTGGTGAATATATGTATACTACTAAGTAAGTGGTGGGTTTTTGTTTTGACTTTTTTTAATAAATATGGTGGTTTGTGTATTGTAATGTTTGTGAAAATATATTGAAATAATTATACTATCTCTAGATTGGATCCAGTCAAACTGATCTCTCCTTTGAAGATCTATGTCTCATCTTAAAAAAAATGTTTGAAAGATTTTATTATTATATTCCTCTTTAATTTTGATATAATACATGTTTTTTTTTCCTTCA

mRNA sequence

ATAAAACATAAATCTCTTCAAACTCTCAATAACCAAACCTCCAACCCTAAAATCTCCATTTTTTCCATTTTGCAACAAACCCACATCCCAAATCTTCATAAAGCTTCAATCTTTACCAAAACCCACAAGAAATAATGACTCTCCAAAACCCCCCTCTCAAACCCACTTCATCAATTTTACCACATAGCCAAGAATCAGATCTAAAGAGCGATGATCAGAGCCTTGACACTGCCGCCGTGGAGGCAGAGGAGAGCGGGCTGGAGCGGCTAAAGCGCCACCGGGTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAGAAATGGGGGAAGGAGGAGCTTTTGAAGGATTGGATCGACGGCTCCGCATTTGAAGCTTCTCTGTTTCCTTCTGGGGTTGTAACGGCTCGCCGGGCTTTGGCCCGAGAAGCTAAGAGAACGTCGCCAAATAACAACTCTACCGCCACCGCCGGAGCTTTGACAGTATTGAACAGTTGGTGAATATATGTATACTACTAAGTAAGTGGTGGGTTTTTGTTTTGACTTTTTTTAATAAATATGGTGGTTTGTGTATTGTAATGTTTGTGAAAATATATTGAAATAATTATACTATCTCTAGATTGGATCCAGTCAAACTGATCTCTCCTTTGAAGATCTATGTCTCATCTTAAAAAAAATGTTTGAAAGATTTTATTATTATATTCCTCTTTAATTTTGATATAATACATGTTTTTTTTTCCTTCA

Coding sequence (CDS)

ATGACTCTCCAAAACCCCCCTCTCAAACCCACTTCATCAATTTTACCACATAGCCAAGAATCAGATCTAAAGAGCGATGATCAGAGCCTTGACACTGCCGCCGTGGAGGCAGAGGAGAGCGGGCTGGAGCGGCTAAAGCGCCACCGGGTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAGAAATGGGGGAAGGAGGAGCTTTTGAAGGATTGGATCGACGGCTCCGCATTTGAAGCTTCTCTGTTTCCTTCTGGGGTTGTAACGGCTCGCCGGGCTTTGGCCCGAGAAGCTAAGAGAACGTCGCCAAATAACAACTCTACCGCCACCGCCGGAGCTTTGACAGTATTGAACAGTTGGTGA

Protein sequence

MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNSTATAGALTVLNSW

Homology

[Close]

BLAST of Sed0010508 vs. NCBI nr
Match: XP_023518112.1 (protein BIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 4.2e-40
Identity = 94/121 (77.69%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPE 60
           M L   PLKPTS +LP +QESD KSDDQ L    + AEE+GLERLKRHRVAVAGQVWIPE
Sbjct: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKL----LAAEENGLERLKRHRVAVAGQVWIPE 60

Query: 61  KWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNS---TATAGALTVLN 119
           KWGKEELLKDWIDGSAFEASLFPSG+V+ARRALAREAKR+SPNNNS   +A AGAL +LN
Sbjct: 61  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILN 117

[Close]

BLAST of Sed0010508 vs. NCBI nr
Match: XP_022972606.1 (protein BIC1-like [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 7.2e-40
Identity = 94/121 (77.69%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPE 60
           M L   PLKPTS +LP +QESD KSDDQ L    + AEE+GLERLKRHRVAVAGQVWIPE
Sbjct: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKL----LAAEENGLERLKRHRVAVAGQVWIPE 60

Query: 61  KWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNS---TATAGALTVLN 119
           KWGKEELLKDWIDGSAFEASLFPSG+V ARRALAREAKR+SPNNNS   +A AGAL +LN
Sbjct: 61  KWGKEELLKDWIDGSAFEASLFPSGIVPARRALAREAKRSSPNNNSATASAAAGALRILN 117

[Close]

BLAST of Sed0010508 vs. NCBI nr
Match: XP_022962648.1 (protein BIC1-like [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPE 60
           M L   PLKPTS +LP +QESD KSDDQ L    +  EE+GLERLKRHRVAVAGQVWIPE
Sbjct: 1   MALLASPLKPTSPLLPDNQESDQKSDDQKL----LAPEENGLERLKRHRVAVAGQVWIPE 60

Query: 61  KWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNS---TATAGALTVLN 119
           KWGKEELLKDWIDGSAFEASLFPSG+V+ARRALAREAKR+SPNNNS   +ATAG+L +LN
Sbjct: 61  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSAAASATAGSLRILN 117

[Close]

BLAST of Sed0010508 vs. NCBI nr
Match: KAG7027199.1 (Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 93/121 (76.86%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPE 60
           M L   PLKPTS +LP +QESD KSDDQ L    +  EE+GLERLKRHRVAVAGQVWIPE
Sbjct: 1   MALLASPLKPTSPLLPDNQESDQKSDDQKL----LAPEENGLERLKRHRVAVAGQVWIPE 60

Query: 61  KWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNS---TATAGALTVLN 119
           KWGKEELLKDWIDGSAFEASLFPSG+V+ARRALAREAKR+SPNNNS   +A AGAL +LN
Sbjct: 61  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILN 117

[Close]

BLAST of Sed0010508 vs. NCBI nr
Match: XP_038882952.1 (protein BIC2-like [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 4.7e-31
Identity = 88/130 (67.69%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHS--QESDLK--SDDQS-LDT--AAVEAEESGLERLKRHRVAVA 60
           MTL +P  KP S +  H   QESD     D Q+ LDT  +A+  EESG ERLKRHRVAVA
Sbjct: 1   MTLPSP--KPNSPLFLHHPLQESDQSRPQDHQTKLDTTSSALAPEESGRERLKRHRVAVA 60

Query: 61  GQVWIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNSTAT---- 119
           GQVWIP+KWGKEE LKDWIDGSAFEASLFPSG+V+ARRALAR+AKR SPNNN+ AT    
Sbjct: 61  GQVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARRALARDAKRLSPNNNAAATTAAA 120

[Close]

BLAST of Sed0010508 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-15
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 2   TLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEE-----SGLERLKRHRVAVAGQV 61
           T Q+PP  P  +    S  S  K D   L+    +++E     +G ERLK+HR  +AG+V
Sbjct: 25  TKQDPPSLPQEAA---SSVSADKKDLALLEEKPKQSQEEDRVDTGRERLKKHRREIAGRV 84

Query: 62  WIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTS 102
           WIPE WG+EELLKDWID S F+  L P+G+ +AR AL  EA+R +
Sbjct: 85  WIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

[Close]

BLAST of Sed0010508 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 40 SGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREA 98
          SG +RLKRHR  VAG+V IP+ WGKE LL  W+D S F+A+   S +V+AR AL  ++
Sbjct: 39 SGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADS 96

[Close]

BLAST of Sed0010508 vs. ExPASy TrEMBL
Match: A0A6J1I6F1 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.5e-40
Identity = 94/121 (77.69%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPE 60
           M L   PLKPTS +LP +QESD KSDDQ L    + AEE+GLERLKRHRVAVAGQVWIPE
Sbjct: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKL----LAAEENGLERLKRHRVAVAGQVWIPE 60

Query: 61  KWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNS---TATAGALTVLN 119
           KWGKEELLKDWIDGSAFEASLFPSG+V ARRALAREAKR+SPNNNS   +A AGAL +LN
Sbjct: 61  KWGKEELLKDWIDGSAFEASLFPSGIVPARRALAREAKRSSPNNNSATASAAAGALRILN 117

[Close]

BLAST of Sed0010508 vs. ExPASy TrEMBL
Match: A0A6J1HFE1 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.8e-40
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPE 60
           M L   PLKPTS +LP +QESD KSDDQ L    +  EE+GLERLKRHRVAVAGQVWIPE
Sbjct: 1   MALLASPLKPTSPLLPDNQESDQKSDDQKL----LAPEENGLERLKRHRVAVAGQVWIPE 60

Query: 61  KWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNNS---TATAGALTVLN 119
           KWGKEELLKDWIDGSAFEASLFPSG+V+ARRALAREAKR+SPNNNS   +ATAG+L +LN
Sbjct: 61  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSAAASATAGSLRILN 117

[Close]

BLAST of Sed0010508 vs. ExPASy TrEMBL
Match: A0A5D3C697 (Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001370 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.1e-29
Identity = 80/128 (62.50%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSI-LPHSQESDLKSDDQSLD----TAAVEAEESGLERLKRHRVAVAGQ 60
           MTL +P   P SS+ LPH     L+  DQ+L        +E  ES  ERLKRHR+AVAG 
Sbjct: 1   MTLPSP--NPNSSLFLPHHDHPHLQESDQTLSEHDPQKGLEEGESSRERLKRHRMAVAGH 60

Query: 61  VWIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNN-----STATA 119
           VWIP+KWGKEE LKDWIDGSAFEASLFPSG+V+AR ALAR+AKR SPNNN     +TA A
Sbjct: 61  VWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARCALARDAKRLSPNNNTATATATAAA 120

[Close]

BLAST of Sed0010508 vs. ExPASy TrEMBL
Match: A0A0A0KFC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.4e-28
Identity = 78/129 (60.47%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 1   MTLQNPPLKPTSSIL----PHSQESDLKSDDQSLDTAAVEAEESGLERLKRHRVAVAGQV 60
           MTL +P   P SS+     PH QESD    +        E +ES  ERLKRHR+AVAG V
Sbjct: 1   MTLPSP--NPNSSLFLPHHPHLQESDQTLSEHDPQKPLEEEDESSRERLKRHRMAVAGHV 60

Query: 61  WIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTSPNNN-------STAT 119
           WIP+KWGKEE LKDWIDGSAFEASLF SG+V+AR ALAR+AKR SPNNN       +TA 
Sbjct: 61  WIPDKWGKEEFLKDWIDGSAFEASLFHSGIVSARCALARDAKRLSPNNNTATAAATATAA 120

[Close]

BLAST of Sed0010508 vs. ExPASy TrEMBL
Match: A0A5N5I036 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_009271 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-20
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 27  DQSLDTAAVEAEESGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGV 86
           DQ    AA E EESGLERLK+HR+ VAGQVWIPE WG+EELL+DWID SAF+ASLFPSG+
Sbjct: 76  DQVPTAAAAEEEESGLERLKKHRMEVAGQVWIPEIWGQEELLQDWIDCSAFDASLFPSGI 135

Query: 87  VTARRALAREAKR 100
           +TAR AL  E +R
Sbjct: 136 MTARSALVEEGRR 148

[Close]

BLAST of Sed0010508 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 2   TLQNPPLKPTSSILPHSQESDLKSDDQSLDTAAVEAEE-----SGLERLKRHRVAVAGQV 61
           T Q+PP  P  +    S  S  K D   L+    +++E     +G ERLK+HR  +AG+V
Sbjct: 25  TKQDPPSLPQEAA---SSVSADKKDLALLEEKPKQSQEEDRVDTGRERLKKHRREIAGRV 84

Query: 62  WIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREAKRTS 102
           WIPE WG+EELLKDWID S F+  L P+G+ +AR AL  EA+R +
Sbjct: 85  WIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

[Close]

BLAST of Sed0010508 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 40 SGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGVVTARRALAREA 98
          SG +RLKRHR  VAG+V IP+ WGKE LL  W+D S F+A+   S +V+AR AL  ++
Sbjct: 39 SGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADS 96

The following BLAST results are available for this feature:

BLAST of Sed0010508 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518112.1	4.2e-40	77.69	protein BIC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972606.1	7.2e-40	77.69	protein BIC1-like [Cucurbita maxima]	[more]
XP_022962648.1	1.6e-39	76.86	protein BIC1-like [Cucurbita moschata]	[more]
KAG7027199.1	2.7e-39	76.86	Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038882952.1	4.7e-31	67.69	protein BIC2-like [Benincasa hispida]	[more]

BLAST of Sed0010508 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ1	2.2e-15	45.71	Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1	[more]
Q9M280	1.1e-09	53.45	Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1	[more]

BLAST of Sed0010508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6F1	3.5e-40	77.69	protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1	[more]
A0A6J1HFE1	7.8e-40	76.86	protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1	[more]
A0A5D3C697	2.1e-29	62.50	Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFC4	2.4e-28	60.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1	[more]
A0A5N5I036	3.1e-20	71.23	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]

BLAST of Sed0010508 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52740.1	1.6e-16	45.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G44450.1	7.5e-11	53.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR34207:SF2	PROTEIN BIC1	coord: 20..105
IPR040374	Protein BIC	PANTHER	PTHR34207	PROTEIN BIC1	coord: 20..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010508.1	Sed0010508.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009785	blue light signaling pathway