Sed0010497 (gene) Chayote v1

Overview


Name	Sed0010497
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG04: 37075039 .. 37076356 (+)
RNA-Seq Expression	Sed0010497
Synteny	Sed0010497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACGTGATGGCTTTTATGTTAAGACTTTGGTTCGTTCAACTAATAGACCACTTCCCTTACACTTGTTCTTCTTTTCTTCCACTTTCTCTTCACAAAGAGAAAGTCAATCCCAAAATCTCAATTCAACCCAATTTCCCTCTCTCTCTTTTTAAACTCTCCATTCTATAATTTCACAACCCAATTTCCCATTTTCACTCAATTTCATGTTCCAATGGAGGATCATGCATCCAAAATCACTAAACCATTTGGTGGCTCATTTGCTATGGAGCTAACAGGCAAGATCATGGTGGCCACCATTTTCATCCTCTTTTTGGTGGTTGTATTTGTTCTTATTCTACAGCTCTACTCCAGATGGTTGCTGTCTCGCATTGACAATTCCGCCACCGAGCCCGCCGCGGTTGCTACATTGCCAAAAGGGCTCGACGCCGCCGTGCTCGGGTCGATACCGGTGGTGGTTTTCTCGCCGGAGGATTTCAAGGAGGGGTTGGAATGTGCCGTGTGCTTGTCGGAGTTGGCTCGGGGTGAGAAAGCTCGGTTGCTTCCCATTTGCAACCATGGCTTCCATGTTGATTGTATTGACATGTGGTTCAAATCCAATTCTACTTGCCCTCTTTGCAGAAATCAAGTGCTGCCCAATTCGGAGTTTAAGGATTTGGAATCTGGGTCGTTGATAGAATCTCCTGTTTTTCCTACAAATGTTCTGTTTTGGGGGAATCAAATGCAGATTAGTTCATTAGGGGTTTGTTTGGAAGATGCTCAAACTTCTTCTTCTTCTGCAAGCATAAGGCCAGATGGAATGGTGGTTGTTGACATTCCAAACGAGCCCTCTTCATCTTCCTCCGCCGCCGGCATCGCCGCCGTCGACGGCGGCGAAGAGATGAAATCGGTGGTGACAACCAGATTGAGGTCGTTGAAAAGGCTTTTGAGCAGAGAGAGAAGAATTGGCAGCAATTCCAATTCATTGGATCTCGAACAAGTAGGAAGAGCACAAACTTAAAAAAAAAAAAAAATATTAAAAAAAAAAAAAAGAAAGATCAGATATTGGTTTTTTTATTTTTGGTGTGTTTCATGCCAGAGACTGTGACCTCCATAGTCCGGCTGTTACCATGTAAAACTTGTGGAATTATTTTGATGGAATTCAAATTGCTTGTAATTTGGAAAACAAAAACTGGGTTTTTGTTGTTTAAGAGATGAAAGAGTTCATCTTTAAGTGAATGAAGCTCATTCTTCTTTGTTCTGTGTAAATGAATATCATGAAATCAAACTAATGTAATTTTATTGATCTTGGAGATCGTTTATTTTGCCTCGAGTATCAAAC

mRNA sequence

GACGTGATGGCTTTTATGTTAAGACTTTGGTTCGTTCAACTAATAGACCACTTCCCTTACACTTGTTCTTCTTTTCTTCCACTTTCTCTTCACAAAGAGAAAGTCAATCCCAAAATCTCAATTCAACCCAATTTCCCTCTCTCTCTTTTTAAACTCTCCATTCTATAATTTCACAACCCAATTTCCCATTTTCACTCAATTTCATGTTCCAATGGAGGATCATGCATCCAAAATCACTAAACCATTTGGTGGCTCATTTGCTATGGAGCTAACAGGCAAGATCATGGTGGCCACCATTTTCATCCTCTTTTTGGTGGTTGTATTTGTTCTTATTCTACAGCTCTACTCCAGATGGTTGCTGTCTCGCATTGACAATTCCGCCACCGAGCCCGCCGCGGTTGCTACATTGCCAAAAGGGCTCGACGCCGCCGTGCTCGGGTCGATACCGGTGGTGGTTTTCTCGCCGGAGGATTTCAAGGAGGGGTTGGAATGTGCCGTGTGCTTGTCGGAGTTGGCTCGGGGTGAGAAAGCTCGGTTGCTTCCCATTTGCAACCATGGCTTCCATGTTGATTGTATTGACATGTGGTTCAAATCCAATTCTACTTGCCCTCTTTGCAGAAATCAAGTGCTGCCCAATTCGGAGTTTAAGGATTTGGAATCTGGGTCGTTGATAGAATCTCCTGTTTTTCCTACAAATGTTCTGTTTTGGGGGAATCAAATGCAGATTAGTTCATTAGGGGTTTGTTTGGAAGATGCTCAAACTTCTTCTTCTTCTGCAAGCATAAGGCCAGATGGAATGGTGGTTGTTGACATTCCAAACGAGCCCTCTTCATCTTCCTCCGCCGCCGGCATCGCCGCCGTCGACGGCGGCGAAGAGATGAAATCGGTGGTGACAACCAGATTGAGGTCGTTGAAAAGGCTTTTGAGCAGAGAGAGAAGAATTGGCAGCAATTCCAATTCATTGGATCTCGAACAAGTAGGAAGAGCACAAACTTAAAAAAAAAAAAAAATATTAAAAAAAAAAAAAAGAAAGATCAGATATTGGTTTTTTTATTTTTGGTGTGTTTCATGCCAGAGACTGTGACCTCCATAGTCCGGCTGTTACCATGTAAAACTTGTGGAATTATTTTGATGGAATTCAAATTGCTTGTAATTTGGAAAACAAAAACTGGGTTTTTGTTGTTTAAGAGATGAAAGAGTTCATCTTTAAGTGAATGAAGCTCATTCTTCTTTGTTCTGTGTAAATGAATATCATGAAATCAAACTAATGTAATTTTATTGATCTTGGAGATCGTTTATTTTGCCTCGAGTATCAAAC

Coding sequence (CDS)

ATGGAGGATCATGCATCCAAAATCACTAAACCATTTGGTGGCTCATTTGCTATGGAGCTAACAGGCAAGATCATGGTGGCCACCATTTTCATCCTCTTTTTGGTGGTTGTATTTGTTCTTATTCTACAGCTCTACTCCAGATGGTTGCTGTCTCGCATTGACAATTCCGCCACCGAGCCCGCCGCGGTTGCTACATTGCCAAAAGGGCTCGACGCCGCCGTGCTCGGGTCGATACCGGTGGTGGTTTTCTCGCCGGAGGATTTCAAGGAGGGGTTGGAATGTGCCGTGTGCTTGTCGGAGTTGGCTCGGGGTGAGAAAGCTCGGTTGCTTCCCATTTGCAACCATGGCTTCCATGTTGATTGTATTGACATGTGGTTCAAATCCAATTCTACTTGCCCTCTTTGCAGAAATCAAGTGCTGCCCAATTCGGAGTTTAAGGATTTGGAATCTGGGTCGTTGATAGAATCTCCTGTTTTTCCTACAAATGTTCTGTTTTGGGGGAATCAAATGCAGATTAGTTCATTAGGGGTTTGTTTGGAAGATGCTCAAACTTCTTCTTCTTCTGCAAGCATAAGGCCAGATGGAATGGTGGTTGTTGACATTCCAAACGAGCCCTCTTCATCTTCCTCCGCCGCCGGCATCGCCGCCGTCGACGGCGGCGAAGAGATGAAATCGGTGGTGACAACCAGATTGAGGTCGTTGAAAAGGCTTTTGAGCAGAGAGAGAAGAATTGGCAGCAATTCCAATTCATTGGATCTCGAACAAGTAGGAAGAGCACAAACTTAA

Protein sequence

MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEPAAVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPICNHGFHVDCIDMWFKSNSTCPLCRNQVLPNSEFKDLESGSLIESPVFPTNVLFWGNQMQISSLGVCLEDAQTSSSSASIRPDGMVVVDIPNEPSSSSSAAGIAAVDGGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT

Homology

[Close]

BLAST of Sed0010497 vs. NCBI nr
Match: XP_023513774.1 (RING-H2 finger protein ATL60-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.7 bits (966), Expect = 1.6e-100
Identity = 206/284 (72.54%), Postives = 229/284 (80.63%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+HAS I+K F GS  MEL GKIM A IFILFLV+VFVLILQLYSRWLLSRID S+++ 
Sbjct: 1   MEEHASGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIDESSSDS 60

Query: 61  A---------AVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLP 120
           A         AVATL KGLDAAVL  IPVVVFSPEDFKEGLECAVCLSELA+GEKARLLP
Sbjct: 61  AVLRRSDQESAVATLTKGLDAAVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKARLLP 120

Query: 121 ICNHGFHVDCIDMWFKSNSTCPLCRNQVLPNSEF-------KDLESGSLIESPVFPTNVL 180
            CNHGFHVDCIDMWFKSNSTCPLCR+ V P S         +DLESGS +ESP+FPTN+L
Sbjct: 121 RCNHGFHVDCIDMWFKSNSTCPLCRDPVAPKSSIPTEMNSAEDLESGSSMESPIFPTNIL 180

Query: 181 FWGNQMQISSLGVCLEDAQTSSSSAS-------IRPDGMVVVDIPNEPSSSSSAAGIAAV 240
           FWGNQMQISS GVCLE+AQTSSSS+S       IR DGMVV+DIPNEPSSSSS+   +  
Sbjct: 181 FWGNQMQISSRGVCLEEAQTSSSSSSSSSSSSNIRADGMVVIDIPNEPSSSSSST--SGR 240

Query: 241 DGGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
             GEEMKSVVT+RL++LKRLLSRERRIG+N  SL+LEQ GRAQ+
Sbjct: 241 SAGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQS 282

[Close]

BLAST of Sed0010497 vs. NCBI nr
Match: KAG6593587.1 (RING-H2 finger protein ATL60, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025931.1 RING-H2 finger protein ATL60, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.1 bits (954), Expect = 4.0e-99
Identity = 204/282 (72.34%), Postives = 225/282 (79.79%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+HAS I+K F GS  MEL GKIM A IFILFLV+VFVLILQLYSRWLLSRI  S+++ 
Sbjct: 1   MEEHASGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIHESSSDS 60

Query: 61  AA---------VATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLP 120
           A          VATL KGLDAAVL  IPVVVFSPEDFKEGLECAVCLSELA+GEKARLLP
Sbjct: 61  AVLRRSDQESDVATLTKGLDAAVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKARLLP 120

Query: 121 ICNHGFHVDCIDMWFKSNSTCPLCRNQVLPN-------SEFKDLESGSLIESPVFPTNVL 180
            CNHGFHVDCIDMWFKSNSTCPLCR+ V P        +  +DLESGS +ESP+FPTN+L
Sbjct: 121 RCNHGFHVDCIDMWFKSNSTCPLCRDPVAPKPSIPTEMNSAEDLESGSSMESPIFPTNIL 180

Query: 181 FWGNQMQISSLGVCLEDAQTSSSSAS------IRPDGMVVVDIPNEPSSSSSAAGIAAVD 240
           FWGNQMQISS GVCLE+AQTSSSS+S      IR DGMVV+DIPNEPSSSSS  G     
Sbjct: 181 FWGNQMQISSRGVCLEEAQTSSSSSSSSSSSNIRADGMVVIDIPNEPSSSSSGTG--GRS 240

Query: 241 GGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQ 261
            GEEMKSVVT+RL++LKRLLSRERRIG+N  SL+LEQ GRAQ
Sbjct: 241 AGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQ 280

[Close]

BLAST of Sed0010497 vs. NCBI nr
Match: XP_022964315.1 (RING-H2 finger protein ATL60-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 2.6e-98
Identity = 202/283 (71.38%), Postives = 226/283 (79.86%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+HAS I+K F GS  MEL GKIM A IFILFLV+VFVLILQLYSRWLLSRI  S+++ 
Sbjct: 1   MEEHASGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIHESSSDS 60

Query: 61  AA---------VATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLP 120
           A          VATL KGLDAAVL  IPVVVFSPEDFKEGLECAVCLSELA+GEK RLLP
Sbjct: 61  AVLRRSDQESDVATLTKGLDAAVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKVRLLP 120

Query: 121 ICNHGFHVDCIDMWFKSNSTCPLCRNQVLPN-------SEFKDLESGSLIESPVFPTNVL 180
            C+HGFHVDCIDMWFKSNSTCPLCR+ V P        +  +DLESGS +ESP+FPTN+L
Sbjct: 121 RCSHGFHVDCIDMWFKSNSTCPLCRDPVAPKPSIPTEMNSAEDLESGSSMESPIFPTNIL 180

Query: 181 FWGNQMQISSLGVCLEDAQTSSSSAS------IRPDGMVVVDIPNEPSSSSSAAGIAAVD 240
           FWGNQMQISS GVCLE+AQTSSSS+S      IR DGMVV+DIPNEPSSSSS  G +   
Sbjct: 181 FWGNQMQISSRGVCLEEAQTSSSSSSSSSSSNIRADGMVVIDIPNEPSSSSS--GTSGRS 240

Query: 241 GGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
            GEEMKSVVT+RL++LKRLLSRERRIG+N  SL+LEQ GRAQ+
Sbjct: 241 AGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQS 281

[Close]

BLAST of Sed0010497 vs. NCBI nr
Match: XP_023000132.1 (RING-H2 finger protein ATL60-like [Cucurbita maxima])

HSP 1 Score: 369.0 bits (946), Expect = 3.4e-98
Identity = 202/284 (71.13%), Postives = 226/284 (79.58%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+H S I+K F GS  MEL GKIM A IFILFLV+VFVLILQLYSRWLLSRID S+++ 
Sbjct: 1   MEEHTSGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIDESSSDS 60

Query: 61  A---------AVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLP 120
           A         +VAT+ KGLDA VL  IPVVVFSPEDFKEGLECAVCLSELA+GEKARLLP
Sbjct: 61  AILRRSDQESSVATMTKGLDADVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKARLLP 120

Query: 121 ICNHGFHVDCIDMWFKSNSTCPLCRNQVLPNSEF-------KDLESGSLIESPVFPTNVL 180
            CNHGFHVDCIDMWFKSNSTCPLCR+ V P S         +DLESGS +ESP+FPTN+L
Sbjct: 121 RCNHGFHVDCIDMWFKSNSTCPLCRDPVAPKSSIPTEINSAEDLESGSSMESPIFPTNIL 180

Query: 181 FWGNQMQISSLGVCLEDAQTSSSSAS-------IRPDGMVVVDIPNEPSSSSSAAGIAAV 240
           FWGNQMQISS GVCLE+AQTSSSS+S       IR DGMVV+DIPNE SSSSS  G +  
Sbjct: 181 FWGNQMQISSRGVCLEEAQTSSSSSSSSSSSSNIRADGMVVIDIPNELSSSSS--GTSGR 240

Query: 241 DGGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
             GEEMKSVVT+RL++LKRLLSRERRIG+N  SL+LEQ GRAQ+
Sbjct: 241 SAGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQS 282

[Close]

BLAST of Sed0010497 vs. NCBI nr
Match: XP_022147071.1 (RING-H2 finger protein ATL3-like [Momordica charantia])

HSP 1 Score: 365.5 bits (937), Expect = 3.7e-97
Identity = 191/274 (69.71%), Postives = 221/274 (80.66%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRI-----DN 60
           ME+H S+IT+PFGGSFAMELTGKIM+A I ILFLV++FVL+LQLYSRW LSRI     D+
Sbjct: 1   MEEHTSRITRPFGGSFAMELTGKIMLAAILILFLVIIFVLVLQLYSRWFLSRIVESTPDS 60

Query: 61  SATEPAAVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPICNH 120
           +A+  +   +L KGLDAAVL S+PV+VF   DF+EGLECAVCLSELA+GE+ARLLP CNH
Sbjct: 61  AASHGSGQDSLRKGLDAAVLRSLPVLVFEAADFEEGLECAVCLSELAQGERARLLPRCNH 120

Query: 121 GFHVDCIDMWFKSNSTCPLCRNQVL-------PNSEFKDLESGSLIESPVFPTNVLFWGN 180
           GFHVDCIDMWFKSNSTCPLCRN V         ++  +DLESGS IESP+FPTNVLFWGN
Sbjct: 121 GFHVDCIDMWFKSNSTCPLCRNPVALQALNPSQSNSAEDLESGSSIESPIFPTNVLFWGN 180

Query: 181 QMQISSLGVCLEDAQTSSSSASIRPDGMVVVDIPNEPSSSSSAAGIAAVDGGEEMKSVVT 240
           QMQ+SS GVCLE+A TSSSSA+ RPDG+V +DIPNEPS+SSS AG     G EEMKS +T
Sbjct: 181 QMQVSSRGVCLEEAPTSSSSANTRPDGVVAIDIPNEPSASSSGAGAGGCTGDEEMKSALT 240

Query: 241 TRLRSLKRLLSRERRIGSNS-NSLDLEQVGRAQT 262
           TRLR+LKRLLS ERR G NS    DLEQVGR Q+
Sbjct: 241 TRLRTLKRLLSGERRAGGNSLTPSDLEQVGRGQS 274

[Close]

BLAST of Sed0010497 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-42
Identity = 116/310 (37.42%), Postives = 166/310 (53.55%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSR---WLLSRI---- 60
           M+D+ S  +  FG     E+T KI++  I +LF+ V+FVLIL LY++   W + ++    
Sbjct: 1   MDDNRSTHSSMFGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQ 60

Query: 61  -----------DNSATEPAAV---------------ATLPKGLDAAVLGSIPVVVFSPED 120
                      D S+  P  V               A    GL +  L S+P+V F  + 
Sbjct: 61  QQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDS 120

Query: 121 FKEGLECAVCLSELARGEKARLLPICNHGFHVDCIDMWFKSNSTCPLCRNQVL------- 180
            K+GLEC++CLSEL +G+KARLLP CNH FHV+CIDMWF+S+STCP+CRN VL       
Sbjct: 121 CKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180

Query: 181 --------------PNSEFKDLESGSLIESPVFPTNVLFWGNQMQIS--SLGVCLEDAQT 240
                           +   D  S     SP FPTNVL WG Q Q+S  +  V  ++   
Sbjct: 181 KRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPTNVLVWGRQDQVSTGNTNVGTQEDGA 240

Query: 241 SSSSASIRPDGMVVVDIPNEPSS----SSSAAGIAAVDGGEEMKSVVTTRLRSLKRLLSR 251
           + + AS +    VV+DI +  S     SSS++ +  +   EE KS +TTRLRSL+R LSR
Sbjct: 241 AGNGAS-QSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTTRLRSLRRFLSR 300

[Close]

BLAST of Sed0010497 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.5e-37
Identity = 114/298 (38.26%), Postives = 154/298 (51.68%), Query Frame = 0


Query: 19  ELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDN-------SATEPAA--VATLPK- 78
           E  GK+++ +I  +F  ++F+L+L LY+R    R++         + +P +  +   P+ 
Sbjct: 19  ETMGKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRR 78

Query: 79  ----------------GLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPI 138
                           GLD+ +L SI VVVF   DFK+GLECAVCLS+L  G+KAR+LP 
Sbjct: 79  RRFVFAQSQEDPLHNAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPR 138

Query: 139 CNHGFHVDCIDMWFKSNSTCPLCRNQV-------------LPNSEFKDLESGS------- 198
           CNHGFHVDCIDMWF+S+STCPLCRN V             LP ++  + ESG        
Sbjct: 139 CNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLPQNQ--NFESGHSTNQHNP 198

Query: 199 ----------LIESPVFPTNVLFWGNQMQISSLGVCL-------------EDAQTSSSSA 248
                       E   FPTNVL WG+Q Q+ S G+ +              D Q  SSS 
Sbjct: 199 SQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTEESPSGNFAASYNDHQQESSST 258

[Close]

BLAST of Sed0010497 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 92/260 (35.38%), Postives = 126/260 (48.46%), Query Frame = 0


Query: 12  FGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRI----------DNSAT--- 71
           F GS    ++GKIM++ I ILF VV+ ++ L LY+RW L R           +  AT   
Sbjct: 18  FSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVF 77

Query: 72  ---EPAAVAT---LPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPI 131
              +P+  AT     +GLD  V+ S+PV  FS E  K+ +ECAVCLSE    E  R+LP 
Sbjct: 78  FTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPN 137

Query: 132 CNHGFHVDCIDMWFKSNSTCPLCRNQV--LPNSEFKDLESGSLIESPVFPTNVLFWGNQM 191
           C H FHVDCIDMWF S+STCPLCR+ V  L   E         +   V    VL     +
Sbjct: 138 CQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLV----I 197

Query: 192 QISSLGVCLEDAQTSSSSASIRPDG---MVVVDIPNEPSSSSSAAGIAAVDGGEEMKSVV 248
           + SS     ++   S SS  +R D       +++P    S              +     
Sbjct: 198 EPSSSSGLTDEPHGSGSSQMLREDSGRKPAAIEVPRRTFSEFEDELTRRDSPASQSFRSP 257

[Close]

BLAST of Sed0010497 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-26
Identity = 71/170 (41.76%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 9   TKPFGGSFA-----MELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRID-------NS 68
           TKP  GS +       L GKIM++++ +LF+ V+ +L    Y+RWL  R +        S
Sbjct: 8   TKPIWGSVSHTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRS 67

Query: 69  ATEPAAVATLPKGLDAAVLGSIPVVVFS---PEDFKEGLECAVCLSELARGEKARLLPIC 128
                + +   + LD AVL  IP+ V+S   P   +E  EC+VCLSE    ++ RLLP C
Sbjct: 68  HLRTLSASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKC 127

Query: 129 NHGFHVDCIDMWFKSNSTCPLCRNQVLPNSEFKDLESGSLIESP--VFPT 162
            H FHVDCID WF+S STCPLCR  V P   F+ +E+GS   S    FPT
Sbjct: 128 GHSFHVDCIDTWFRSRSTCPLCRAPVQP--PFQVIETGSSSSSSPLTFPT 175

[Close]

BLAST of Sed0010497 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-23
Identity = 85/250 (34.00%), Postives = 119/250 (47.60%), Query Frame = 0


Query: 14  GSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDN--------------SATE 73
           GS    L GKIM+A++ ILF+ V+ +L    Y+RWL  R +               +A +
Sbjct: 18  GSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARD 77

Query: 74  PAAVATLPKGLDAAVLGSIPVVVFSPEDFKEGL-ECAVCLSELARGEKARLLPICNHGFH 133
           P   ++    LD  VL  IP+ V+S +  +  L EC+VCLSE    ++ R+LP C H FH
Sbjct: 78  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFH 137

Query: 134 VDCIDMWFKSNSTCPLCRNQVLPNSEFKDLESGSLIESPVFPTNVLFWGNQMQISSLGVC 193
           VDCID WF+S S+CPLCR  V P     + E  + +   V P      G+    SS    
Sbjct: 138 VDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSS---SSSDES 197

Query: 194 LEDAQTSSSSASIR---------PDGMV--VVDIPNEPSSSSSAAGIAAVDGGEEMKSVV 238
                +SSS + +R         P  +V  +V+IP E   S+S       D G       
Sbjct: 198 ESSTPSSSSGSPVRFPMEACEREPIDLVGIIVEIPREFQDSNSD---LPADNG------- 254

[Close]

BLAST of Sed0010497 vs. ExPASy TrEMBL
Match: A0A6J1HKG4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464366 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 202/283 (71.38%), Postives = 226/283 (79.86%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+HAS I+K F GS  MEL GKIM A IFILFLV+VFVLILQLYSRWLLSRI  S+++ 
Sbjct: 1   MEEHASGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIHESSSDS 60

Query: 61  AA---------VATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLP 120
           A          VATL KGLDAAVL  IPVVVFSPEDFKEGLECAVCLSELA+GEK RLLP
Sbjct: 61  AVLRRSDQESDVATLTKGLDAAVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKVRLLP 120

Query: 121 ICNHGFHVDCIDMWFKSNSTCPLCRNQVLPN-------SEFKDLESGSLIESPVFPTNVL 180
            C+HGFHVDCIDMWFKSNSTCPLCR+ V P        +  +DLESGS +ESP+FPTN+L
Sbjct: 121 RCSHGFHVDCIDMWFKSNSTCPLCRDPVAPKPSIPTEMNSAEDLESGSSMESPIFPTNIL 180

Query: 181 FWGNQMQISSLGVCLEDAQTSSSSAS------IRPDGMVVVDIPNEPSSSSSAAGIAAVD 240
           FWGNQMQISS GVCLE+AQTSSSS+S      IR DGMVV+DIPNEPSSSSS  G +   
Sbjct: 181 FWGNQMQISSRGVCLEEAQTSSSSSSSSSSSNIRADGMVVIDIPNEPSSSSS--GTSGRS 240

Query: 241 GGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
            GEEMKSVVT+RL++LKRLLSRERRIG+N  SL+LEQ GRAQ+
Sbjct: 241 AGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQS 281

[Close]

BLAST of Sed0010497 vs. ExPASy TrEMBL
Match: A0A6J1KCR2 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494420 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.6e-98
Identity = 202/284 (71.13%), Postives = 226/284 (79.58%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+H S I+K F GS  MEL GKIM A IFILFLV+VFVLILQLYSRWLLSRID S+++ 
Sbjct: 1   MEEHTSGISKSFEGSLTMELMGKIMAAAIFILFLVIVFVLILQLYSRWLLSRIDESSSDS 60

Query: 61  A---------AVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLP 120
           A         +VAT+ KGLDA VL  IPVVVFSPEDFKEGLECAVCLSELA+GEKARLLP
Sbjct: 61  AILRRSDQESSVATMTKGLDADVLRLIPVVVFSPEDFKEGLECAVCLSELAQGEKARLLP 120

Query: 121 ICNHGFHVDCIDMWFKSNSTCPLCRNQVLPNSEF-------KDLESGSLIESPVFPTNVL 180
            CNHGFHVDCIDMWFKSNSTCPLCR+ V P S         +DLESGS +ESP+FPTN+L
Sbjct: 121 RCNHGFHVDCIDMWFKSNSTCPLCRDPVAPKSSIPTEINSAEDLESGSSMESPIFPTNIL 180

Query: 181 FWGNQMQISSLGVCLEDAQTSSSSAS-------IRPDGMVVVDIPNEPSSSSSAAGIAAV 240
           FWGNQMQISS GVCLE+AQTSSSS+S       IR DGMVV+DIPNE SSSSS  G +  
Sbjct: 181 FWGNQMQISSRGVCLEEAQTSSSSSSSSSSSSNIRADGMVVIDIPNELSSSSS--GTSGR 240

Query: 241 DGGEEMKSVVTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
             GEEMKSVVT+RL++LKRLLSRERRIG+N  SL+LEQ GRAQ+
Sbjct: 241 SAGEEMKSVVTSRLKTLKRLLSRERRIGNNLTSLNLEQAGRAQS 282

[Close]

BLAST of Sed0010497 vs. ExPASy TrEMBL
Match: A0A6J1D188 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016097 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.8e-97
Identity = 191/274 (69.71%), Postives = 221/274 (80.66%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRI-----DN 60
           ME+H S+IT+PFGGSFAMELTGKIM+A I ILFLV++FVL+LQLYSRW LSRI     D+
Sbjct: 1   MEEHTSRITRPFGGSFAMELTGKIMLAAILILFLVIIFVLVLQLYSRWFLSRIVESTPDS 60

Query: 61  SATEPAAVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPICNH 120
           +A+  +   +L KGLDAAVL S+PV+VF   DF+EGLECAVCLSELA+GE+ARLLP CNH
Sbjct: 61  AASHGSGQDSLRKGLDAAVLRSLPVLVFEAADFEEGLECAVCLSELAQGERARLLPRCNH 120

Query: 121 GFHVDCIDMWFKSNSTCPLCRNQVL-------PNSEFKDLESGSLIESPVFPTNVLFWGN 180
           GFHVDCIDMWFKSNSTCPLCRN V         ++  +DLESGS IESP+FPTNVLFWGN
Sbjct: 121 GFHVDCIDMWFKSNSTCPLCRNPVALQALNPSQSNSAEDLESGSSIESPIFPTNVLFWGN 180

Query: 181 QMQISSLGVCLEDAQTSSSSASIRPDGMVVVDIPNEPSSSSSAAGIAAVDGGEEMKSVVT 240
           QMQ+SS GVCLE+A TSSSSA+ RPDG+V +DIPNEPS+SSS AG     G EEMKS +T
Sbjct: 181 QMQVSSRGVCLEEAPTSSSSANTRPDGVVAIDIPNEPSASSSGAGAGGCTGDEEMKSALT 240

Query: 241 TRLRSLKRLLSRERRIGSNS-NSLDLEQVGRAQT 262
           TRLR+LKRLLS ERR G NS    DLEQVGR Q+
Sbjct: 241 TRLRTLKRLLSGERRAGGNSLTPSDLEQVGRGQS 274

[Close]

BLAST of Sed0010497 vs. ExPASy TrEMBL
Match: A0A0A0K6T2 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G447970 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.4e-86
Identity = 184/272 (67.65%), Postives = 210/272 (77.21%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME+ AS I+ PFG S AMELTGKIM+A I IL LV+ FVL+LQLYSRW LSR+  S+++ 
Sbjct: 1   MEEQASTISHPFGDSIAMELTGKIMLAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  A------AVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPICN 120
           A         TL KGLD+AVL SIPVVVFSP DFKEGLECAVCLSEL+ GEKARLLP CN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNQVL---PNSEFKDLESGSLIESPVFPTNVLFWGNQMQ 180
           HGFHVDCIDMWFKSNSTCPLCRN V    PNSE ++ E+GS +ESP+FPTNVLFWGNQMQ
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNSE-QNPETGSSMESPIFPTNVLFWGNQMQ 180

Query: 181 ISSLGVCLEDAQTSSSSASIRP--DGMVVVDIPNEPSSSSSAAGIAAVDGGEEMKSVVTT 240
           +SS GVCLE+ Q SSSS+S     + MVV+DIPNEP  S+S AG    D  EEM SVVT 
Sbjct: 181 VSSRGVCLEEPQISSSSSSTSSSINTMVVIDIPNEP--STSGAGTCFAD--EEMGSVVTN 240

Query: 241 RLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
           RLR+LKRLLSRERRIG+N    D+EQ G  Q+
Sbjct: 241 RLRTLKRLLSRERRIGTNPIPSDIEQEGIVQS 267

[Close]

BLAST of Sed0010497 vs. ExPASy TrEMBL
Match: A0A5D3BW46 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001700 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.5e-83
Identity = 179/275 (65.09%), Postives = 206/275 (74.91%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDNSATEP 60
           ME  AS I  PFG SFAM+LTGKIM A I IL LV+ FVL+LQLYSRW LSR+  S+++ 
Sbjct: 1   MEAQASTINHPFGDSFAMQLTGKIMFAAILILCLVIAFVLLLQLYSRWFLSRLHQSSSDS 60

Query: 61  A------AVATLPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPICN 120
           A         TL KGLD+AVL SIPVVVFSP DFKEGLECAVCLSEL+ GEKARLLP CN
Sbjct: 61  ATNQESPVSTTLRKGLDSAVLHSIPVVVFSPADFKEGLECAVCLSELSEGEKARLLPRCN 120

Query: 121 HGFHVDCIDMWFKSNSTCPLCRNQVL---PNSEFKDLESGSLIESPVFPTNVLFWGNQMQ 180
           HGFHVDCIDMWFKSNSTCPLCRN V    PN E ++ E+ S  ESP+FPTNVLFWGNQMQ
Sbjct: 121 HGFHVDCIDMWFKSNSTCPLCRNPVAITEPNLE-QNPETESSTESPIFPTNVLFWGNQMQ 180

Query: 181 ISSLGVCLEDAQTSSSSAS-----IRPDGMVVVDIPNEPSSSSSAAGIAAVDGGEEMKSV 240
           +SS GVCLE+ Q SSSS+S        + MVV+DIP++PS+S ++   A     EEM SV
Sbjct: 181 VSSRGVCLEEPQISSSSSSSPSSPSSANAMVVIDIPSQPSTSGASTCFA----DEEMGSV 240

Query: 241 VTTRLRSLKRLLSRERRIGSNSNSLDLEQVGRAQT 262
           VT RLR+LKRLLSRERRIG+N  S D+EQ G  Q+
Sbjct: 241 VTNRLRTLKRLLSRERRIGNNPISSDIEQEGIGQS 270

[Close]

BLAST of Sed0010497 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-43
Identity = 116/310 (37.42%), Postives = 166/310 (53.55%), Query Frame = 0


Query: 1   MEDHASKITKPFGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSR---WLLSRI---- 60
           M+D+ S  +  FG     E+T KI++  I +LF+ V+FVLIL LY++   W + ++    
Sbjct: 1   MDDNRSTHSSMFGDLSTEEVTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQ 60

Query: 61  -----------DNSATEPAAV---------------ATLPKGLDAAVLGSIPVVVFSPED 120
                      D S+  P  V               A    GL +  L S+P+V F  + 
Sbjct: 61  QQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDS 120

Query: 121 FKEGLECAVCLSELARGEKARLLPICNHGFHVDCIDMWFKSNSTCPLCRNQVL------- 180
            K+GLEC++CLSEL +G+KARLLP CNH FHV+CIDMWF+S+STCP+CRN VL       
Sbjct: 121 CKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180

Query: 181 --------------PNSEFKDLESGSLIESPVFPTNVLFWGNQMQIS--SLGVCLEDAQT 240
                           +   D  S     SP FPTNVL WG Q Q+S  +  V  ++   
Sbjct: 181 KRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPTNVLVWGRQDQVSTGNTNVGTQEDGA 240

Query: 241 SSSSASIRPDGMVVVDIPNEPSS----SSSAAGIAAVDGGEEMKSVVTTRLRSLKRLLSR 251
           + + AS +    VV+DI +  S     SSS++ +  +   EE KS +TTRLRSL+R LSR
Sbjct: 241 AGNGAS-QSQEAVVLDISDSSSRNHNVSSSSSSMRFIVEEEEAKSPMTTRLRSLRRFLSR 300

[Close]

BLAST of Sed0010497 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 3.2e-38
Identity = 114/298 (38.26%), Postives = 154/298 (51.68%), Query Frame = 0


Query: 19  ELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDN-------SATEPAA--VATLPK- 78
           E  GK+++ +I  +F  ++F+L+L LY+R    R++         + +P +  +   P+ 
Sbjct: 19  ETMGKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRR 78

Query: 79  ----------------GLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPI 138
                           GLD+ +L SI VVVF   DFK+GLECAVCLS+L  G+KAR+LP 
Sbjct: 79  RRFVFAQSQEDPLHNAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPR 138

Query: 139 CNHGFHVDCIDMWFKSNSTCPLCRNQV-------------LPNSEFKDLESGS------- 198
           CNHGFHVDCIDMWF+S+STCPLCRN V             LP ++  + ESG        
Sbjct: 139 CNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGLPQNQ--NFESGHSTNQHNP 198

Query: 199 ----------LIESPVFPTNVLFWGNQMQISSLGVCL-------------EDAQTSSSSA 248
                       E   FPTNVL WG+Q Q+ S G+ +              D Q  SSS 
Sbjct: 199 SQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLVVTEESPSGNFAASYNDHQQESSST 258

[Close]

BLAST of Sed0010497 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-28
Identity = 92/260 (35.38%), Postives = 126/260 (48.46%), Query Frame = 0


Query: 12  FGGSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRI----------DNSAT--- 71
           F GS    ++GKIM++ I ILF VV+ ++ L LY+RW L R           +  AT   
Sbjct: 18  FSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVF 77

Query: 72  ---EPAAVAT---LPKGLDAAVLGSIPVVVFSPEDFKEGLECAVCLSELARGEKARLLPI 131
              +P+  AT     +GLD  V+ S+PV  FS E  K+ +ECAVCLSE    E  R+LP 
Sbjct: 78  FTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPN 137

Query: 132 CNHGFHVDCIDMWFKSNSTCPLCRNQV--LPNSEFKDLESGSLIESPVFPTNVLFWGNQM 191
           C H FHVDCIDMWF S+STCPLCR+ V  L   E         +   V    VL     +
Sbjct: 138 CQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLV----I 197

Query: 192 QISSLGVCLEDAQTSSSSASIRPDG---MVVVDIPNEPSSSSSAAGIAAVDGGEEMKSVV 248
           + SS     ++   S SS  +R D       +++P    S              +     
Sbjct: 198 EPSSSSGLTDEPHGSGSSQMLREDSGRKPAAIEVPRRTFSEFEDELTRRDSPASQSFRSP 257

[Close]

BLAST of Sed0010497 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-27
Identity = 71/170 (41.76%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 9   TKPFGGSFA-----MELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRID-------NS 68
           TKP  GS +       L GKIM++++ +LF+ V+ +L    Y+RWL  R +        S
Sbjct: 8   TKPIWGSVSHTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRS 67

Query: 69  ATEPAAVATLPKGLDAAVLGSIPVVVFS---PEDFKEGLECAVCLSELARGEKARLLPIC 128
                + +   + LD AVL  IP+ V+S   P   +E  EC+VCLSE    ++ RLLP C
Sbjct: 68  HLRTLSASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKC 127

Query: 129 NHGFHVDCIDMWFKSNSTCPLCRNQVLPNSEFKDLESGSLIESP--VFPT 162
            H FHVDCID WF+S STCPLCR  V P   F+ +E+GS   S    FPT
Sbjct: 128 GHSFHVDCIDTWFRSRSTCPLCRAPVQP--PFQVIETGSSSSSSPLTFPT 175

[Close]

BLAST of Sed0010497 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-24
Identity = 85/250 (34.00%), Postives = 119/250 (47.60%), Query Frame = 0


Query: 14  GSFAMELTGKIMVATIFILFLVVVFVLILQLYSRWLLSRIDN--------------SATE 73
           GS    L GKIM+A++ ILF+ V+ +L    Y+RWL  R +               +A +
Sbjct: 18  GSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARD 77

Query: 74  PAAVATLPKGLDAAVLGSIPVVVFSPEDFKEGL-ECAVCLSELARGEKARLLPICNHGFH 133
           P   ++    LD  VL  IP+ V+S +  +  L EC+VCLSE    ++ R+LP C H FH
Sbjct: 78  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFH 137

Query: 134 VDCIDMWFKSNSTCPLCRNQVLPNSEFKDLESGSLIESPVFPTNVLFWGNQMQISSLGVC 193
           VDCID WF+S S+CPLCR  V P     + E  + +   V P      G+    SS    
Sbjct: 138 VDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSS---SSSDES 197

Query: 194 LEDAQTSSSSASIR---------PDGMV--VVDIPNEPSSSSSAAGIAAVDGGEEMKSVV 238
                +SSS + +R         P  +V  +V+IP E   S+S       D G       
Sbjct: 198 ESSTPSSSSGSPVRFPMEACEREPIDLVGIIVEIPREFQDSNSD---LPADNG------- 254

The following BLAST results are available for this feature:

BLAST of Sed0010497 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513774.1	1.6e-100	72.54	RING-H2 finger protein ATL60-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593587.1	4.0e-99	72.34	RING-H2 finger protein ATL60, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022964315.1	2.6e-98	71.38	RING-H2 finger protein ATL60-like isoform X1 [Cucurbita moschata]	[more]
XP_023000132.1	3.4e-98	71.13	RING-H2 finger protein ATL60-like [Cucurbita maxima]	[more]
XP_022147071.1	3.7e-97	69.71	RING-H2 finger protein ATL3-like [Momordica charantia]	[more]

BLAST of Sed0010497 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF63	2.1e-42	37.42	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
P0C035	4.5e-37	38.26	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]
Q8L9T5	3.2e-27	35.38	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
O22255	4.7e-26	41.76	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LZJ6	4.8e-23	34.00	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of Sed0010497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKG4	1.2e-98	71.38	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464366...	[more]
A0A6J1KCR2	1.6e-98	71.13	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494420 P...	[more]
A0A6J1D188	1.8e-97	69.71	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101609...	[more]
A0A0A0K6T2	2.4e-86	67.65	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G447970 PE...	[more]
A0A5D3BW46	2.5e-83	65.09	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Sed0010497 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72310.1	1.5e-43	37.42	RING/U-box superfamily protein	[more]
AT1G53820.1	3.2e-38	38.26	RING/U-box superfamily protein	[more]
AT3G16720.1	2.3e-28	35.38	TOXICOS EN LEVADURA 2	[more]
AT2G47560.1	3.3e-27	41.76	RING/U-box superfamily protein	[more]
AT3G62690.1	3.4e-24	34.00	AtL5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..135 e-value: 6.1E-8 score: 42.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 93..136 e-value: 3.0E-13 score: 49.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 94..136 score: 12.164712
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 74..144 e-value: 4.4E-20 score: 72.7
None	No IPR available	PANTHER	PTHR45676:SF132	RING-H2 FINGER PROTEIN ATL3	coord: 5..250
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 93..136 e-value: 2.28065E-18 score: 74.2687
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 74..142
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 5..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010497.1	Sed0010497.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane