Sed0010481 (gene) Chayote v1

Overview


Name	Sed0010481
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Splicing factor 3B subunit 4
Location	LG12: 4174439 .. 4178629 (+)
RNA-Seq Expression	Sed0010481
Synteny	Sed0010481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAAAAAAAAACACAAAACAAAACAAAACCAATTTAAAAAAAAAAGAAAAGAAAGAAAACCCCTTGAGGTTTTAGATTGTAGTATTTGTGATCCACGAAAACGCAGGAGCCAGTGGTTGTTCCAGTCGCCGGAGAAGATGACGACGAAGATCGCGCCGGGAGTCGGAGCCAATCTCCTCGGCCAGCACGCGCCGGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTCGATCCTCAGGTCAGCTCCCTTCATCCACTAACTAACCCTAGGGTTTCCATCTTCTTCTAATCCCCCATTTTCTTCATATACCCTCCAGATTTCTGAGGAGTTGCTTTGGGAGCTGTTCGTTCAAGCTGGTCCAGTTGGTGCGCCTCTCCATTCCTTTCTCTCTCTTTCGTTTATTCGATTTTTGAGAATTTACCATAATTCTGTTTGTGCTTGTTCATGCCCACTTCTTATTTTGCAGTAAATGTGTACGTTCCGAAGGATAGAGTTACCAATTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCTGATTATGTAAGTCATGCTGTGGAGTCTTTTTCCTTTTAGACCTCTTTTTTTAAACAAGGGTAACCACGCCCGTCCCTTGGCCAGGCACCGGTGACATCGAAGAGTGTTATCACGGATGAGTCTCAAACTTGAGACCTTGAGGGGAGCATACCCTCAAAGCCTAAGTCTTCAACCACTGCTCCACCCTTTGGGGACTTCCTTTTAGACCTCTTAGTTATATGCTTTGGGGTGTTATTTTGATTTTCCATTCTCCGACATTTATGCAGGCAATTAAGGTGCTAAATATGATTAAGCTATATGGGAAGCCAATTCGTGTCAATAAGGTAAGTAGGAGATTTATTCTTTCAACTGCGATAGAATGCGTGTCGATATACTGCTCGCTGCTCAACAAAGGAGGATCGTATTTTATCTTGTTATAGAAATGGATGTTTAACTTCTCTTACGTGTGCACTGCGTATTTCCAGGCGTCTCAGGACAAGAAGAGTTTGGATGTGGGGGCGAATCTCTTTATAGGAAACCTAGACCCGGTAAGCTGTTATAACTGGGAAACTTGCAGAACTAATGTTGTAAAGATTGTAACTTGAACTTGGTTTTTGTTTCAGGATGTTGATGAGAAGCTCCTCTATGATACTTTCAGTGCATTTGGGGTCATTGTGACAAATCCTAAGGTTATAACTTTTCCCATAAACCACCCCTTCACTCATTTGTGCTTTGTTTCTCTAAGGAGAATAGAGATCACTTTCAAGCAAACTATTTAATAGGAGATTAGAGTTCATTTTCCAGCAAAGTAGTGATTTCTAAGGAAGTAATCTTACTTACTACAATTTAACGAAGTGACGCCCTTTCACGGAAATATTAAACCATTACAATTTCCTCTTAGTATATATATATTTTTTTGGACAAGAAACCTTTCCTTTTAGTATATTTTATCTGTATATACAATATCTTTGGTGCTTTATTTTTTCTGGAGCATGCTGACCATCATTTGTCTCCTTTCTGTATTTTCTCTATCGAGCTGGTAAGCTTTTAGGAAGTTTGTGGTTATCTGTGGCTTTTATTAGTTAAAAATTATCTGTGAATTTCTTAAAGAGAATTTATTGATCATTGGTTATTTGGCCCGAAGGTTGCTCTGGATTATAAACTTGACCCTTGAATTTCTGATGACTAATAAAAAGGTTTTGGGAGTTTGAGATAACGAGCCAAGGTAGCCAAGAACTTAGAAATCTTTAGCCAAGTACACAATGCATTTATGCTTGTAAACGTCAAGTTTCTAGGATTTATTCATGGCTGCTCCATATATGATTATGCTCTGCAGTTGCTTTAATGAATAATTGAATAACGACAGCTTTTGTAGTTCACCCATTATCACATTTTCTTTCTTGTTTAAAAACAAGCATCGACACGTCTCTCCCATTTCAAGCATAATGGTGACTGGTAACAGCCAGTTTCTGGTTTCTCTTGTCTATAACATGTGCCTTTTTCAATAGAACATTATTTCTAAATGTCCTCTCATCATGTCATCCCTTAGAATTTCTTTTAGTTCTAAGGATTTTTTATCTAGTTTTTCTTCCATGTGGGCTCCTACATCTTTCTATCACTACGATGCCACGACTATCATGTAATTTATGGAAATGGGACTTGTTATATGACCTGGCTTTCTTATTTACTGTTATTCTCTTGAGTAGTCGGGTATGCTGGATTAGAAATTGAGGGGGCTTTAACATCGTGGCTGTTGGGAGGCTTGAGTTTTTGGCTACTCAACTCTGTGTATCAAACCACACAGTTTCCCTCACTTTTCTTCTTTATAAAGGATCACTTCTTTTGTATGCTCTATTTTTCGTCTTTGGCTTTTCGTATCTGGTGTGTACTCGGCTCTCTCTTGGGATGTATTGAACTACTTAACATGGAAGTTTTTACTCTTATGCGCATTTGTCTTCTGACACTTGGAAAGTCTTCATATTCTTTAAACAGATAATGAGGGATCCAGATACGGGAAATTCGCGTGGGTTTGGTTTTGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCAATTGAGGTGCGTCATTTCTTTGCTTGTCAGCTTATCACCGCAATGCAATCCAGCAACATGCACACAACATTATGTTTTGGTATATTTTATATGAAGTGCCTAATCCCAATTCCCAGCAAGTCCTCTTAGGCAGTGTTTGGGGGCAAGGGTGTCAAACTGATGAGATGGGGAATAATTCTCCTTACTCGCGTTTGGGGGACCGATTTCATTTCCCTTATAATCACTAGTCATCCTTCTCATAATCTCATTTTCCTTGTTACCACTTTTCATTCTCATAACCACTTTTTTTCCGCCTTTAATCATTCCATGCACCCCAAATATAGGTAACATTTCCTCATAATGATTTCCTTGACCTTAAATACAGATTCTCATTTTGTCCATAATTGTTTTTATTCTCGTGGTCTCAAATCCTCATTAATAACTTGAATTATCTTATTTTATGTCCTAATTAATGGTGGACATCCCTCGAAAAAGAAACAAGAAAACTAATCTTGAGACGGTTTTTTTTTTTTTTGCTATTTTCACAACAGGCGATGACTGGGCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCATATAAGAAAGATACCAAGGGAGAGCGGCACGGCACACCTGCAGGTAAGAATTGTTGCTGATCTCTGAACTTGATGGTCGGACTTGTTTCATGTTATGAACATAATTCAAACTATTGATCTGTGGAAGGATATCATCACCATTGCTTTAACTTACTCCTGGTTCGGCCTTTTCTATTCTGTAGAAAGAGTGTTGGCTGCTAGCAATCCTCAGAAGAGCAGACCTCACACTATGTTTGCAAGTGGCCCTCCGACACTTCCAACGGTTGCACAGGCAAACGGCACGATCAGAGCTCCGGTGCCACCACGCCCCTTTGCAAATGGTGCAATTGCTCCCACCCCAATTCCTGCAATGCGTCCTCCACCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCGTGGACAACCACCTGCATGGCAGGGTCAGCCGCAGCAACCAGGTCAAATGATGCCGGGTTCCTTCATTCCACCCCCTGTCCAGCAGTTCCGGCCACCTCCCCCGAACATGCCTCCGCCGCCACCTCAGGTGCCTGGACATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGCACAACCACCGCTTTGGCGACCACCGCTGCCGCCAATGCAGCAGCAGCAGCCCGGAAGGCCCCCTATGCAGATGTTTTCGATGCCTCCACCACCACCTCCGAATCACATTCCACCACCTCATCCATCTTCAGGCTAAGATACTATCCTGCTAAGCTAGCAATGAAAATGTCGTTTTTCCTTGATCATTTTCCCCACTTTTATGAGTAGTTTAGTCATCTTGTCATTCAAATTGTTAGCACTTAATCTGAGAAATTTGCAGGGAGAAATTCGGCATTTTTGCTACAAAATATAAAATGTTCTCGTCTTAGTCTGGGATACTTGTTAAAATGTTGAAATTAACTCTCGATTATGAGAAAAGAAGCTATGTAAAAATGTAGCTAGTATATAAGCACCATTTTAAAATATAGATCACGAAAAATAAAG

mRNA sequence

GACAAAAAAAAAACACAAAACAAAACAAAACCAATTTAAAAAAAAAAGAAAAGAAAGAAAACCCCTTGAGGTTTTAGATTGTAGTATTTGTGATCCACGAAAACGCAGGAGCCAGTGGTTGTTCCAGTCGCCGGAGAAGATGACGACGAAGATCGCGCCGGGAGTCGGAGCCAATCTCCTCGGCCAGCACGCGCCGGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTCGATCCTCAGATTTCTGAGGAGTTGCTTTGGGAGCTGTTCGTTCAAGCTGGTCCAGTTGTAAATGTGTACGTTCCGAAGGATAGAGTTACCAATTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCTGATTATGCAATTAAGGTGCTAAATATGATTAAGCTATATGGGAAGCCAATTCGTGTCAATAAGGCGTCTCAGGACAAGAAGAGTTTGGATGTGGGGGCGAATCTCTTTATAGGAAACCTAGACCCGGATGTTGATGAGAAGCTCCTCTATGATACTTTCAGTGCATTTGGGGTCATTGTGACAAATCCTAAGATAATGAGGGATCCAGATACGGGAAATTCGCGTGGGTTTGGTTTTGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCAATTGAGGCGATGACTGGGCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCATATAAGAAAGATACCAAGGGAGAGCGGCACGGCACACCTGCAGAAAGAGTGTTGGCTGCTAGCAATCCTCAGAAGAGCAGACCTCACACTATGTTTGCAAGTGGCCCTCCGACACTTCCAACGGTTGCACAGGCAAACGGCACGATCAGAGCTCCGGTGCCACCACGCCCCTTTGCAAATGGTGCAATTGCTCCCACCCCAATTCCTGCAATGCGTCCTCCACCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCGTGGACAACCACCTGCATGGCAGGGTCAGCCGCAGCAACCAGGTCAAATGATGCCGGGTTCCTTCATTCCACCCCCTGTCCAGCAGTTCCGGCCACCTCCCCCGAACATGCCTCCGCCGCCACCTCAGGTGCCTGGACATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGCACAACCACCGCTTTGGCGACCACCGCTGCCGCCAATGCAGCAGCAGCAGCCCGGAAGGCCCCCTATGCAGATGTTTTCGATGCCTCCACCACCACCTCCGAATCACATTCCACCACCTCATCCATCTTCAGGCTAAGATACTATCCTGCTAAGCTAGCAATGAAAATGTCGTTTTTCCTTGATCATTTTCCCCACTTTTATGAGTAGTTTAGTCATCTTGTCATTCAAATTGTTAGCACTTAATCTGAGAAATTTGCAGGGAGAAATTCGGCATTTTTGCTACAAAATATAAAATGTTCTCGTCTTAGTCTGGGATACTTGTTAAAATGTTGAAATTAACTCTCGATTATGAGAAAAGAAGCTATGTAAAAATGTAGCTAGTATATAAGCACCATTTTAAAATATAGATCACGAAAAATAAAG

Coding sequence (CDS)

ATGACGACGAAGATCGCGCCGGGAGTCGGAGCCAATCTCCTCGGCCAGCACGCGCCGGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTCGATCCTCAGATTTCTGAGGAGTTGCTTTGGGAGCTGTTCGTTCAAGCTGGTCCAGTTGTAAATGTGTACGTTCCGAAGGATAGAGTTACCAATTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCTGATTATGCAATTAAGGTGCTAAATATGATTAAGCTATATGGGAAGCCAATTCGTGTCAATAAGGCGTCTCAGGACAAGAAGAGTTTGGATGTGGGGGCGAATCTCTTTATAGGAAACCTAGACCCGGATGTTGATGAGAAGCTCCTCTATGATACTTTCAGTGCATTTGGGGTCATTGTGACAAATCCTAAGATAATGAGGGATCCAGATACGGGAAATTCGCGTGGGTTTGGTTTTGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCAATTGAGGCGATGACTGGGCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCATATAAGAAAGATACCAAGGGAGAGCGGCACGGCACACCTGCAGAAAGAGTGTTGGCTGCTAGCAATCCTCAGAAGAGCAGACCTCACACTATGTTTGCAAGTGGCCCTCCGACACTTCCAACGGTTGCACAGGCAAACGGCACGATCAGAGCTCCGGTGCCACCACGCCCCTTTGCAAATGGTGCAATTGCTCCCACCCCAATTCCTGCAATGCGTCCTCCACCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCGTGGACAACCACCTGCATGGCAGGGTCAGCCGCAGCAACCAGGTCAAATGATGCCGGGTTCCTTCATTCCACCCCCTGTCCAGCAGTTCCGGCCACCTCCCCCGAACATGCCTCCGCCGCCACCTCAGGTGCCTGGACATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGCACAACCACCGCTTTGGCGACCACCGCTGCCGCCAATGCAGCAGCAGCAGCCCGGAAGGCCCCCTATGCAGATGTTTTCGATGCCTCCACCACCACCTCCGAATCACATTCCACCACCTCATCCATCTTCAGGCTAA

Protein sequence

MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRAPVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIPPPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQMFSMPPPPPPNHIPPPHPSSG

Homology

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BLAST of Sed0010481 vs. NCBI nr
Match: TYK23651.1 (splicing factor 3B subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 696.8 bits (1797), Expect = 1.0e-196
Identity = 357/380 (93.95%), Postives = 361/380 (95.00%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P PIPA+R P PPQGVAFPPM M GQPPAWQGQPQQPGQMMPGS IP
Sbjct: 241 PVPPRPFANGAITPNPIPAIR-PSPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSMIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSMPIPPPMGMGGAQPPLWRPP PPMQQQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPMPPPQAQAHSMPIPPPMGMGGAQPPLWRPPPPPMQQQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]

BLAST of Sed0010481 vs. NCBI nr
Match: XP_038878136.1 (splicing factor 3B subunit 4 [Benincasa hispida])

HSP 1 Score: 693.7 bits (1789), Expect = 8.7e-196
Identity = 357/380 (93.95%), Postives = 362/380 (95.26%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P+PIPA+R PPPPQGVAFPPM M GQPPAWQGQPQQPGQMMPGS IP
Sbjct: 241 PVPPRPFANGAITPSPIPAIR-PPPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSIIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSMPIPPPMGMGGAQPPLWRPP PPM QQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPLPPPQAQAHSMPIPPPMGMGGAQPPLWRPPPPPM-QQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 378

[Close]

BLAST of Sed0010481 vs. NCBI nr
Match: XP_022948089.1 (splicing factor 3B subunit 4-like [Cucurbita moschata] >KAG6597617.1 Splicing factor 3B subunit 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029058.1 Splicing factor 3B subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 693.7 bits (1789), Expect = 8.7e-196
Identity = 355/381 (93.18%), Postives = 364/381 (95.54%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NGT+  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
            +PPRPFANG IAP+PIPA+R PPPPQGVAFPPMQM GQPPAWQGQPQQ GQ+MPGS + 
Sbjct: 241 LMPPRPFANGGIAPSPIPAIR-PPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMML 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPM-QQQQPGRPPMQ 360
           PPVQQFRPPPPNMPPPPPQ PGHSMPIPPPMGMGG QPPLWRPP PPM QQQQPGRPPMQ
Sbjct: 301 PPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQPGRPPMQ 360

Query: 361 MFSMPPPPPPNHIPPPHPSSG 381
           M SMPPPPPPNHIPPPHPSSG
Sbjct: 361 MSSMPPPPPPNHIPPPHPSSG 380

[Close]

BLAST of Sed0010481 vs. NCBI nr
Match: XP_004147654.1 (splicing factor 3B subunit 4 [Cucumis sativus] >KGN57241.1 hypothetical protein Csa_009897 [Cucumis sativus])

HSP 1 Score: 693.3 bits (1788), Expect = 1.1e-195
Identity = 356/380 (93.68%), Postives = 360/380 (94.74%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P PIPA+R P PPQGVAFPPM M GQPPAWQGQPQQPGQMMPGS IP
Sbjct: 241 PVPPRPFANGAITPNPIPAIR-PSPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSMIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSMPIPPPMGMGGAQP LWRPP PPMQQQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPLPPPQAQAHSMPIPPPMGMGGAQPQLWRPPPPPMQQQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]

BLAST of Sed0010481 vs. NCBI nr
Match: XP_008439058.1 (PREDICTED: splicing factor 3B subunit 4 [Cucumis melo])

HSP 1 Score: 691.8 bits (1784), Expect = 3.3e-195
Identity = 355/380 (93.42%), Postives = 359/380 (94.47%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P PIPA+R P PPQGVAFPPM M GQPPAWQGQPQQPG MMPGS IP
Sbjct: 241 PVPPRPFANGAITPNPIPAIR-PSPPQGVAFPPMPMAGQPPAWQGQPQQPGHMMPGSMIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSM IPPPMGMGGAQPPLWRPP PPMQQQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPMPPPQAQAHSMSIPPPMGMGGAQPPLWRPPPPPMQQQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]

BLAST of Sed0010481 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.9e-92
Identity = 221/407 (54.30%), Postives = 256/407 (62.90%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ F+++ SF+ASDAAIEAM GQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTMFASGPP----TLPTVAQAN-----------GTIRAPV 259
           G+ AER+LAA NP  Q  RPH +FA  PP      P V+              G+   PV
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPV 247

Query: 260 PPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQP----QQPGQMMPGSF 319
           PP     GA+ P   PAM PPP P G A       G P A  G P      P    PG  
Sbjct: 248 PP----PGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGA--GHPGHGHSHPHPFPPGGM 307

Query: 320 IPPPVQQFR---------------PPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRP 379
             P + Q +               PP     PPP   PG   P PPPMGM    PP   P
Sbjct: 308 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSP 367

[Close]

BLAST of Sed0010481 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 5.4e-92
Identity = 220/407 (54.05%), Postives = 255/407 (62.65%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ F+++ SF+ASDAAIEAM GQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTMFASGPP----TLPTVAQAN-----------GTIRAPV 259
           G+ AER+LAA NP  Q  RPH +FA  PP      P V+              G+   PV
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPV 247

Query: 260 PPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQP----QQPGQMMPGSF 319
           PP     GA+ P   PAM PPP P G         G P A  G P      P    PG  
Sbjct: 248 PP----PGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGA--GHPGHGHSHPHPFPPGGM 307

Query: 320 IPPPVQQFR---------------PPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRP 379
             P + Q +               PP     PPP   PG   P PPPMGM    PP   P
Sbjct: 308 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSP 367

[Close]

BLAST of Sed0010481 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 5.4e-92
Identity = 220/407 (54.05%), Postives = 255/407 (62.65%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ F+++ SF+ASDAAIEAM GQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTMFASGPP----TLPTVAQAN-----------GTIRAPV 259
           G+ AER+LAA NP  Q  RPH +FA  PP      P V+              G+   PV
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPV 247

Query: 260 PPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQP----QQPGQMMPGSF 319
           PP     GA+ P   PAM PPP P G         G P A  G P      P    PG  
Sbjct: 248 PP----PGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGA--GHPGHGHSHPHPFPPGGM 307

Query: 320 IPPPVQQFR---------------PPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRP 379
             P + Q +               PP     PPP   PG   P PPPMGM    PP   P
Sbjct: 308 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSP 367

[Close]

BLAST of Sed0010481 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 325.5 bits (833), Expect = 8.1e-88
Identity = 207/390 (53.08%), Postives = 244/390 (62.56%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD ++SE +LWEL VQAGPVV+V +PKDRVT  HQG+GF+EF  EEDA
Sbjct: 8   ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK+LNMIKLYGKPI+VNKAS  +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRD D+G S+GF F+++ SFEASD A+EAM GQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTMFASGPPTLP-TVAQANGTIRAPVPPRPFANGAIAPTP 259
           GT AER+LAA NP   K RPH +F+  P  +P     A   + A +           P P
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPP 247

Query: 260 IPAMR-----------PPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIPPPVQQ 319
           +  M            PPPPP     PP      PP     P+ P     G + PPP   
Sbjct: 248 LMGMAQSGYQGQYPPVPPPPPSVTPMPP----PMPPTPGMTPRPPPPPSSGMWPPPP--- 307

Query: 320 FRPPPPNMPPPPPQVPGHSMPIPP----PMGMGGAQPP----------LWRPPLPPMQQQ 379
             PPPP   P PP +PG   P PP    P GMGG  PP          +  PP P     
Sbjct: 308 --PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSA 367

[Close]

BLAST of Sed0010481 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 5.0e-61
Identity = 153/328 (46.65%), Postives = 200/328 (60.98%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           +RNQDAT Y+GNLD ++++ +L+EL +QAGPVVN+++P+DRV N H G+GF EF  E+D 
Sbjct: 6   DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 139
           +YA ++LN +KL+GKPIRVN+ASQD+  +  +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66  EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125

Query: 140 VTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGER 199
           V  P++ RD + G S+G+GFVSYDSFE +DAAIEAM  Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 185

Query: 200 HGTPAERVLAAS--------NPQKSRPHTMFASGPPTLPTVAQANGTIRA----PVPPRP 259
           HG  AER LAA+         PQ + P   F+   P   + A    TI A    PVP  P
Sbjct: 186 HGDIAERKLAAAAKKNKVAVTPQSTLP-PGFSPATPAPTSAANTPATIAATSIPPVPNVP 245

Query: 260 F--ANGAIAPTPIPAMRPPPPPQGV-AFPPMQMRGQPPAWQGQPQQPGQMMPGSFIPPPV 319
              A  A+ P  IP + P    Q     P M M   P    G P  P             
Sbjct: 246 LVGATTAVPPLSIPNVLPFTAAQHFPGMPAMPMMNVPMGPGGAPLVP------------- 305

Query: 320 QQFRPPPPNMPPPPPQVPGHSMPIPPPM 332
               PPPP M    P     ++P  P M
Sbjct: 306 ----PPPPGMVMASPSPAAATIPGAPVM 314

[Close]

BLAST of Sed0010481 vs. ExPASy TrEMBL
Match: A0A5D3DJ06 (Splicing factor 3B subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00160 PE=3 SV=1)

HSP 1 Score: 696.8 bits (1797), Expect = 5.0e-197
Identity = 357/380 (93.95%), Postives = 361/380 (95.00%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P PIPA+R P PPQGVAFPPM M GQPPAWQGQPQQPGQMMPGS IP
Sbjct: 241 PVPPRPFANGAITPNPIPAIR-PSPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSMIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSMPIPPPMGMGGAQPPLWRPP PPMQQQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPMPPPQAQAHSMPIPPPMGMGGAQPPLWRPPPPPMQQQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]

BLAST of Sed0010481 vs. ExPASy TrEMBL
Match: A0A6J1G8U2 (splicing factor 3B subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451774 PE=3 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 4.2e-196
Identity = 355/381 (93.18%), Postives = 364/381 (95.54%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NGT+  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
            +PPRPFANG IAP+PIPA+R PPPPQGVAFPPMQM GQPPAWQGQPQQ GQ+MPGS + 
Sbjct: 241 LMPPRPFANGGIAPSPIPAIR-PPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMML 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPM-QQQQPGRPPMQ 360
           PPVQQFRPPPPNMPPPPPQ PGHSMPIPPPMGMGG QPPLWRPP PPM QQQQPGRPPMQ
Sbjct: 301 PPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQPGRPPMQ 360

Query: 361 MFSMPPPPPPNHIPPPHPSSG 381
           M SMPPPPPPNHIPPPHPSSG
Sbjct: 361 MSSMPPPPPPNHIPPPHPSSG 380

[Close]

BLAST of Sed0010481 vs. ExPASy TrEMBL
Match: A0A0A0LAZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=3 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.5e-196
Identity = 356/380 (93.68%), Postives = 360/380 (94.74%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P PIPA+R P PPQGVAFPPM M GQPPAWQGQPQQPGQMMPGS IP
Sbjct: 241 PVPPRPFANGAITPNPIPAIR-PSPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSMIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSMPIPPPMGMGGAQP LWRPP PPMQQQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPLPPPQAQAHSMPIPPPMGMGGAQPQLWRPPPPPMQQQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]

BLAST of Sed0010481 vs. ExPASy TrEMBL
Match: A0A1S3AYG3 (splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=3 SV=1)

HSP 1 Score: 691.8 bits (1784), Expect = 1.6e-195
Identity = 355/380 (93.42%), Postives = 359/380 (94.47%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NG I A
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
           PVPPRPFANGAI P PIPA+R P PPQGVAFPPM M GQPPAWQGQPQQPG MMPGS IP
Sbjct: 241 PVPPRPFANGAITPNPIPAIR-PSPPQGVAFPPMPMAGQPPAWQGQPQQPGHMMPGSMIP 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPMQQQQPGRPPMQM 360
           PPVQQFRPPPPNMP PPPQ   HSM IPPPMGMGGAQPPLWRPP PPMQQQQPGRPPMQM
Sbjct: 301 PPVQQFRPPPPNMPMPPPQAQAHSMSIPPPMGMGGAQPPLWRPPPPPMQQQQPGRPPMQM 360

Query: 361 FSMPPPPPPNHIPPPHPSSG 381
            SMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]

BLAST of Sed0010481 vs. ExPASy TrEMBL
Match: A0A6J1I560 (splicing factor 3B subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470774 PE=3 SV=1)

HSP 1 Score: 688.0 bits (1774), Expect = 2.3e-194
Identity = 353/383 (92.17%), Postives = 362/383 (94.52%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAM GQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTMFASGPPTLPTVAQANGTIRA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHT+FASGPPTLP VAQ NGT+  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240

Query: 241 PVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSFIP 300
            +PPRPFANG I P+PIPA+R PPPPQGVAFPPMQM GQPPAWQGQPQQ GQ+MPGS + 
Sbjct: 241 LMPPRPFANGGITPSPIPAIR-PPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMML 300

Query: 301 PPVQQFRPPPPNMPPPPPQVPGHSMPIPPPMGMGGAQPPLWRPPLPPM---QQQQPGRPP 360
           PPVQQFRPPPPNMPPPPPQ PGHSMPIPPPMGMGG QPPLWRPP PPM   QQQQPGRP 
Sbjct: 301 PPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQQQPGRPH 360

Query: 361 MQMFSMPPPPPPNHIPPPHPSSG 381
           MQM SMPPPPPPNHIPPPHPSSG
Sbjct: 361 MQMSSMPPPPPPNHIPPPHPSSG 382

[Close]

BLAST of Sed0010481 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 486.1 bits (1250), Expect = 2.6e-137
Identity = 276/384 (71.88%), Postives = 295/384 (76.82%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQ YGFIE+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLC 180
           PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGF+SYDSFEASDAAIE+MTGQYL 
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTMFASGPPTLPTVAQANGTI 240
           NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHT+FA GPP+  +  Q NG  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 240

Query: 241 RAPVPPRPFANGAIAPTPIPAMRPPPPPQGVAFPPMQMRGQPPAWQGQPQQPGQMMPGSF 300
                PRPFANG++ P PIPA R PPPP     PP   + QPP+W  QPQQ       S 
Sbjct: 241 -----PRPFANGSMQPVPIPAPRQPPPP-----PPQVYQTQPPSWPSQPQQ------HSM 300

Query: 301 IPPPVQQFRPPPPNMPPPPPQVPGHSM------PIPPPMGMGGAQPPLWRPPLPPMQQQQ 360
           +PPP+ QFRPP    PPPPPQ   H        P PPP  MG  Q   W    PP   QQ
Sbjct: 301 VPPPM-QFRPPQGMPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGW----PPQHMQQ 360

Query: 361 PGRPPMQM--------FSMPPPPP 369
            G PP Q          SMPPPPP
Sbjct: 361 QGGPPQQQQPPYQHHHMSMPPPPP 360

[Close]

BLAST of Sed0010481 vs. TAIR 10
Match: AT4G34110.1 (poly(A) binding protein 2 )

HSP 1 Score: 129.4 bits (324), Expect = 6.1e-30
Identity = 72/164 (43.90%), Postives = 104/164 (63.41%), Query Frame = 0


Query: 24  DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAI 83
           + + YVG+LD  +++  L++ F Q G VV V V +D VT    GYG++ F + +DA  AI
Sbjct: 35  NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94

Query: 84  KVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 143
           + LN I LYGKPIRV  + +D      GA N+FI NLD  +D K L+DTFS+FG IV + 
Sbjct: 95  QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SC 154

Query: 144 KIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITV 187
           K+  D  +G S+G+GFV Y + E++  AIE + G  L ++Q+ V
Sbjct: 155 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196

[Close]

BLAST of Sed0010481 vs. TAIR 10
Match: AT1G49760.1 (poly(A) binding protein 8 )

HSP 1 Score: 129.0 bits (323), Expect = 7.9e-30
Identity = 70/175 (40.00%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 28  YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
           YVG+LD  +++  L+E F QAG VV+V V +D  T    GYG++ + + +DA  A+  LN
Sbjct: 48  YVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107

Query: 88  MIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 147
            + L G+ IRV  + +D      G  N+FI NLD  +D K L++TFSAFG I+ + K+  
Sbjct: 108 FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL-SCKVAV 167

Query: 148 DPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVS---YAYKKDTKGER 199
           DP +G S+G+GFV YD+ EA+  AI+ + G  L ++Q+ V    +  ++D  GE+
Sbjct: 168 DP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220

[Close]

BLAST of Sed0010481 vs. TAIR 10
Match: AT1G49760.2 (poly(A) binding protein 8 )

HSP 1 Score: 129.0 bits (323), Expect = 7.9e-30
Identity = 70/175 (40.00%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 28  YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
           YVG+LD  +++  L+E F QAG VV+V V +D  T    GYG++ + + +DA  A+  LN
Sbjct: 48  YVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107

Query: 88  MIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 147
            + L G+ IRV  + +D      G  N+FI NLD  +D K L++TFSAFG I+ + K+  
Sbjct: 108 FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL-SCKVAV 167

Query: 148 DPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVS---YAYKKDTKGER 199
           DP +G S+G+GFV YD+ EA+  AI+ + G  L ++Q+ V    +  ++D  GE+
Sbjct: 168 DP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220

[Close]

BLAST of Sed0010481 vs. TAIR 10
Match: AT1G71770.1 (poly(A)-binding protein 5 )

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-27
Identity = 66/188 (35.11%), Postives = 112/188 (59.57%), Query Frame = 0


Query: 9   VGANLLGQHAPERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNLHQGY 68
           V A      A + + +++ YVG+LDP ++E  L +LF Q  PV N+ V +D +T+   GY
Sbjct: 43  VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGY 102

Query: 69  GFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKL 128
            ++ F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K 
Sbjct: 103 AYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKA 162

Query: 129 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMTGQYLCNRQITVS 188
           LY+TFS+FG I+ + K+  D   G S+G+GFV ++  E + AAI+ + G  L ++Q+ V 
Sbjct: 163 LYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 222

Query: 189 YAYKKDTK 196
           +  ++  +
Sbjct: 223 HFVRRQDR 227

The following BLAST results are available for this feature:

BLAST of Sed0010481 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23651.1	1.0e-196	93.95	splicing factor 3B subunit 4 [Cucumis melo var. makuwa]	[more]
XP_038878136.1	8.7e-196	93.95	splicing factor 3B subunit 4 [Benincasa hispida]	[more]
XP_022948089.1	8.7e-196	93.18	splicing factor 3B subunit 4-like [Cucurbita moschata] >KAG6597617.1 Splicing fa...	[more]
XP_004147654.1	1.1e-195	93.68	splicing factor 3B subunit 4 [Cucumis sativus] >KGN57241.1 hypothetical protein ...	[more]
XP_008439058.1	3.3e-195	93.42	PREDICTED: splicing factor 3B subunit 4 [Cucumis melo]	[more]

BLAST of Sed0010481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	1.9e-92	54.30	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	5.4e-92	54.05	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	5.4e-92	54.05	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	8.1e-88	53.08	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	5.0e-61	46.65	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Sed0010481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJ06	5.0e-197	93.95	Splicing factor 3B subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1G8U2	4.2e-196	93.18	splicing factor 3B subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451774 ...	[more]
A0A0A0LAZ0	5.5e-196	93.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=3 SV=1	[more]
A0A1S3AYG3	1.6e-195	93.42	splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=3 SV=1	[more]
A0A6J1I560	2.3e-194	92.17	splicing factor 3B subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470774 PE...	[more]

BLAST of Sed0010481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18510.1	2.6e-137	71.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G34110.1	6.1e-30	43.90	poly(A) binding protein 2	[more]
AT1G49760.1	7.9e-30	40.00	poly(A) binding protein 8	[more]
AT1G49760.2	7.9e-30	40.00	poly(A) binding protein 8	[more]
AT1G71770.1	1.3e-27	35.11	poly(A)-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 113..187 e-value: 7.6E-24 score: 95.2 coord: 26..99 e-value: 4.1E-25 score: 99.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 114..184 e-value: 2.1E-19 score: 69.1 coord: 28..97 e-value: 2.7E-19 score: 68.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 112..191 score: 16.909462
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 25..103 score: 18.478559
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 111..200 e-value: 1.3E-25 score: 91.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 17..110 e-value: 4.2E-26 score: 93.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..380
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..380
None	No IPR available	PANTHER	PTHR15241:SF330	SPLICING FACTOR 3B SUBUNIT 4	coord: 1..359
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..359
IPR034158	SF3B4, RNA recognition motif 1	CDD	cd12334	RRM1_SF3B4	coord: 28..100 e-value: 2.3574E-54 score: 172.008
IPR034159	SF3B4, RNA recognition motif 2	CDD	cd12335	RRM2_SF3B4	coord: 111..193 e-value: 3.61257E-62 score: 192.125
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010481.1	Sed0010481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding