Sed0010478 (gene) Chayote v1

Overview
NameSed0010478
Typegene
OrganismSechium edule (Chayote v1)
DescriptionESCRT-related protein CHMP1B
LocationLG07: 10322847 .. 10323989 (+)
RNA-Seq ExpressionSed0010478
SyntenySed0010478
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGATTTGGACCCCACGTTTTTTTTATTTATTGATGAACAAATCCGAGTCGTCCAATTCCTTTGCCACGAAGTCAAACGATTCTCCTTTAACAAATTATCCCAATTTCAAAGAAATTTCAAAGATTTCAAATCCCCAAAATCAATTCTTCTCCAAACCCTAGCTGTTCATCGATTCCTTCGATCCAATTCCATCGCAGAGTTCGATCCATGGGGAACACCGAGAAATTGCTGAACCAGATCATGGAATTGAAGTTCACTTCGAAGTCGCTGCAACGCCAAGCCAGAAAATGCGAGAAGGAAGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAAGGCAACGTCGACGGAGCTCGAATCTACGCGGAGAACGCGATCCGTAAACGAACGGAACAGATGAACTATCTCCGCCTTTCCTCGAGGCTGGATGCCGTCGTGGCTCGCCTCGACACGCAGGCGAAGATGACCACGATCAACAAGTCCATGGCCTCGATCGTCAAGTCCTTGGAATCTTCTTTGACCACTGGGAATTTGCAGAAGATGTCCGAGACTATGGACTCGTTTGAGAAACAGTTTGTGAATATGGAGGTTCAGGCCGAGTTCATGGAGAATGCAATGGCTGGATCCACGTCGCTCTCGACTCCGGAAGGAGAAGTCAACAGCCTGATGCAGCAGGTCGCGGACGATTACGGTCTCGAAGTCTCCGTCGGGCTACCGCAGCCGGCGTCACATGCAATGCCGACGAAGGAGACTGAGAAAGTCGACGAGGACGACTTAACTAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAACGAATTGACATGAGTATAACATCTTATTACTATGTGATGTATATGAAATTTACGCATTTGGAAATTATGAGGGCTTGCTATGAATATTCGAATGATGGTACTTTTATTTCTATTTTCCAGTTAATTTGTTTTCAATGGTAATTTGTCGTGTGTTCATTATCTGTATGTTATCTGAGGATTTGATCATGGGGTAGAAATTTCCATGGAGACCAATGCCAGTGATGATGGGTGCTTATTTCCTTTTCTTAACTGTTGGATTCCATGATTGTATCTATTTCTGCAGCATCCAAGAAATTGTTCTTCGAAGCTCGAATGAATCGGC

mRNA sequence

TGGGATTTGGACCCCACGTTTTTTTTATTTATTGATGAACAAATCCGAGTCGTCCAATTCCTTTGCCACGAAGTCAAACGATTCTCCTTTAACAAATTATCCCAATTTCAAAGAAATTTCAAAGATTTCAAATCCCCAAAATCAATTCTTCTCCAAACCCTAGCTGTTCATCGATTCCTTCGATCCAATTCCATCGCAGAGTTCGATCCATGGGGAACACCGAGAAATTGCTGAACCAGATCATGGAATTGAAGTTCACTTCGAAGTCGCTGCAACGCCAAGCCAGAAAATGCGAGAAGGAAGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAAGGCAACGTCGACGGAGCTCGAATCTACGCGGAGAACGCGATCCGTAAACGAACGGAACAGATGAACTATCTCCGCCTTTCCTCGAGGCTGGATGCCGTCGTGGCTCGCCTCGACACGCAGGCGAAGATGACCACGATCAACAAGTCCATGGCCTCGATCGTCAAGTCCTTGGAATCTTCTTTGACCACTGGGAATTTGCAGAAGATGTCCGAGACTATGGACTCGTTTGAGAAACAGTTTGTGAATATGGAGGTTCAGGCCGAGTTCATGGAGAATGCAATGGCTGGATCCACGTCGCTCTCGACTCCGGAAGGAGAAGTCAACAGCCTGATGCAGCAGGTCGCGGACGATTACGGTCTCGAAGTCTCCGTCGGGCTACCGCAGCCGGCGTCACATGCAATGCCGACGAAGGAGACTGAGAAAGTCGACGAGGACGACTTAACTAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAACGAATTGACATGAGTATAACATCTTATTACTATGTGATGTATATGAAATTTACGCATTTGGAAATTATGAGGGCTTGCTATGAATATTCGAATGATGGTACTTTTATTTCTATTTTCCAGTTAATTTGTTTTCAATGGTAATTTGTCGTGTGTTCATTATCTGTATGTTATCTGAGGATTTGATCATGGGGTAGAAATTTCCATGGAGACCAATGCCAGTGATGATGGGTGCTTATTTCCTTTTCTTAACTGTTGGATTCCATGATTGTATCTATTTCTGCAGCATCCAAGAAATTGTTCTTCGAAGCTCGAATGAATCGGC

Coding sequence (CDS)

ATGGGGAACACCGAGAAATTGCTGAACCAGATCATGGAATTGAAGTTCACTTCGAAGTCGCTGCAACGCCAAGCCAGAAAATGCGAGAAGGAAGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAAGGCAACGTCGACGGAGCTCGAATCTACGCGGAGAACGCGATCCGTAAACGAACGGAACAGATGAACTATCTCCGCCTTTCCTCGAGGCTGGATGCCGTCGTGGCTCGCCTCGACACGCAGGCGAAGATGACCACGATCAACAAGTCCATGGCCTCGATCGTCAAGTCCTTGGAATCTTCTTTGACCACTGGGAATTTGCAGAAGATGTCCGAGACTATGGACTCGTTTGAGAAACAGTTTGTGAATATGGAGGTTCAGGCCGAGTTCATGGAGAATGCAATGGCTGGATCCACGTCGCTCTCGACTCCGGAAGGAGAAGTCAACAGCCTGATGCAGCAGGTCGCGGACGATTACGGTCTCGAAGTCTCCGTCGGGCTACCGCAGCCGGCGTCACATGCAATGCCGACGAAGGAGACTGAGAAAGTCGACGAGGACGACTTAACTAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

Protein sequence

MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMPTKETEKVDEDDLTRRLAELKARG
Homology
BLAST of Sed0010478 vs. NCBI nr
Match: XP_004141672.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-related protein CHMP1B [Cucumis melo] >KAA0059449.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa] >KGN45545.1 hypothetical protein Csa_015849 [Cucumis sativus] >TYK03875.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 365.5 bits (937), Expect = 2.9e-97
Identity = 199/203 (98.03%), Postives = 201/203 (99.01%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. NCBI nr
Match: XP_022964312.1 (ESCRT-related protein CHMP1B [Cucurbita moschata] >XP_023000394.1 ESCRT-related protein CHMP1B [Cucurbita maxima] >XP_023513530.1 ESCRT-related protein CHMP1B [Cucurbita pepo subsp. pepo] >KAG6593503.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025850.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.8 bits (935), Expect = 4.9e-97
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

BLAST of Sed0010478 vs. NCBI nr
Match: XP_022144640.1 (ESCRT-related protein CHMP1B [Momordica charantia])

HSP 1 Score: 364.4 bits (934), Expect = 6.4e-97
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           T+ETEKVDEDDLTRRLAELKARG
Sbjct: 181 TRETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. NCBI nr
Match: XP_038896979.1 (ESCRT-related protein CHMP1B [Benincasa hispida])

HSP 1 Score: 364.4 bits (934), Expect = 6.4e-97
Identity = 199/203 (98.03%), Postives = 200/203 (98.52%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN LMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNILMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. NCBI nr
Match: XP_022954345.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_023549216.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6575490.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014033.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKM+TINKSMASIVKSLESSL TGNLQKMSE MD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMASIVKSLESSLATGNLQKMSENMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 6.9e-94
Identity = 185/203 (91.13%), Postives = 196/203 (96.55%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI ELKFTSKSLQRQARKCEKEE+SEKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KR+EQMNYLRLSSRLDAVVARLDTQAKM TI KSM +IVKSLESSLTTGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKV+EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.4e-93
Identity = 183/203 (90.15%), Postives = 196/203 (96.55%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI +LKFTSKSLQRQ+RKCEKEEK+EKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI KSM +IVKSLESSL TGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKVDEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-84
Identity = 174/205 (84.88%), Postives = 189/205 (92.20%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGN EKL+ QI +LKFTSKSLQRQARKCEKEEK +KLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTE MNYLRL+SRLDAVVARLDTQAKM  I KSMA+IVKSL+S+L TGNLQKMSETMD+
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A+HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -TKETEK-VDEDDLTRRLAELKARG 204
             KE EK VDEDDL+RRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

BLAST of Sed0010478 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-43
Identity = 91/194 (46.91%), Postives = 151/194 (77.84%), Query Frame = 0

Query: 9   NQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFTSK L++Q++K E+ EK++K+K+KKA+E+GN+DGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDSFEKQFVNM 128
           LRL+SR+DAV +R++T  +M ++  SMA+IVKS+E S+   +L+K+++ MD FE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMPTKETEKVD 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+++ ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLTRRLAELKAR 203
            D+LT RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

BLAST of Sed0010478 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-42
Identity = 94/200 (47.00%), Postives = 149/200 (74.50%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           M N EK    +  LKF +K L R A+KC+KEEK+EK KIKKA++KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           ++ + +N+LR+S+R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD 
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ  + ++ 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 180

Query: 181 TKETEKVDEDDLTRRLAELK 201
           T      ++D+L++RLA L+
Sbjct: 181 T-SVASAEQDELSQRLARLR 196

BLAST of Sed0010478 vs. ExPASy TrEMBL
Match: A0A5A7V0Y1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00700 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 199/203 (98.03%), Postives = 201/203 (99.01%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy TrEMBL
Match: A0A0A0K779 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 199/203 (98.03%), Postives = 201/203 (99.01%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy TrEMBL
Match: A0A1S3CHC1 (ESCRT-related protein CHMP1B OS=Cucumis melo OX=3656 GN=LOC103500745 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 199/203 (98.03%), Postives = 201/203 (99.01%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy TrEMBL
Match: A0A6J1KJS6 (ESCRT-related protein CHMP1B OS=Cucurbita maxima OX=3661 GN=LOC111494652 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.4e-97
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

BLAST of Sed0010478 vs. ExPASy TrEMBL
Match: A0A6J1HHH0 (ESCRT-related protein CHMP1B OS=Cucurbita moschata OX=3662 GN=LOC111464364 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.4e-97
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

BLAST of Sed0010478 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 344.7 bits (883), Expect = 4.9e-95
Identity = 185/203 (91.13%), Postives = 196/203 (96.55%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI ELKFTSKSLQRQARKCEKEE+SEKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KR+EQMNYLRLSSRLDAVVARLDTQAKM TI KSM +IVKSLESSLTTGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKV+EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

BLAST of Sed0010478 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 342.4 bits (877), Expect = 2.4e-94
Identity = 183/203 (90.15%), Postives = 196/203 (96.55%), Query Frame = 0

Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI +LKFTSKSLQRQ+RKCEKEEK+EKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDS 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI KSM +IVKSLESSL TGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKVDEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

BLAST of Sed0010478 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-07
Identity = 48/201 (23.88%), Postives = 85/201 (42.29%), Query Frame = 0

Query: 13  ELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLS 72
           E+   ++ ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     
Sbjct: 20  EMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSR 79

Query: 73  SRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQA 132
           +++  V          T+I+  M    K++ +        K ++ +  F+KQ   +++  
Sbjct: 80  AQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTI 139

Query: 133 EFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PASHAM 192
           E M  A+  +      E E   L  QV D+ G+ V+  L               PAS A 
Sbjct: 140 EMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAA 199

Query: 193 PTKETEKVDEDDLTRRLAELK 201
             K +E  + D+L +RLA L+
Sbjct: 200 TNKNSESSEVDELEKRLASLR 220

BLAST of Sed0010478 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 47/196 (23.98%), Postives = 83/196 (42.35%), Query Frame = 0

Query: 18  SKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDA 77
           ++ ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     +++  
Sbjct: 5   TRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRG 64

Query: 78  VVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMEN 137
           V          T+I+  M    K++ +        K ++ +  F+KQ   +++  E M  
Sbjct: 65  VTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSE 124

Query: 138 AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PASHAMPTKET 197
           A+  +      E E   L  QV D+ G+ V+  L               PAS A   K +
Sbjct: 125 AIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNS 184

Query: 198 EKVDEDDLTRRLAELK 201
           E  + D+L +RLA L+
Sbjct: 185 ESSEVDELEKRLASLR 200

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004141672.12.9e-9798.03ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-... [more]
XP_022964312.14.9e-9797.54ESCRT-related protein CHMP1B [Cucurbita moschata] >XP_023000394.1 ESCRT-related ... [more]
XP_022144640.16.4e-9797.54ESCRT-related protein CHMP1B [Momordica charantia][more]
XP_038896979.16.4e-9798.03ESCRT-related protein CHMP1B [Benincasa hispida][more]
XP_022954345.11.1e-9697.54ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_023549216.1 ESCRT-rel... [more]
Match NameE-valueIdentityDescription
Q8LE586.9e-9491.13ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1[more]
Q9SSM43.4e-9390.15ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1[more]
Q84VG11.3e-8484.88ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE... [more]
O965523.3e-4346.91Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch... [more]
Q5E9942.8e-4247.00Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7V0Y11.4e-9798.03ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A0A0K7791.4e-9798.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=4 SV=1[more]
A0A1S3CHC11.4e-9798.03ESCRT-related protein CHMP1B OS=Cucumis melo OX=3656 GN=LOC103500745 PE=4 SV=1[more]
A0A6J1KJS62.4e-9797.54ESCRT-related protein CHMP1B OS=Cucurbita maxima OX=3661 GN=LOC111494652 PE=4 SV... [more]
A0A6J1HHH02.4e-9797.54ESCRT-related protein CHMP1B OS=Cucurbita moschata OX=3662 GN=LOC111464364 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G17730.14.9e-9591.13vacuolar protein sorting 46.1 [more]
AT1G73030.12.4e-9490.15SNF7 family protein [more]
AT5G44560.18.6e-0723.88SNF7 family protein [more]
AT5G44560.22.5e-0623.98SNF7 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 182..202
NoneNo IPR availableCOILSCoilCoilcoord: 11..45
NoneNo IPR availableCOILSCoilCoilcoord: 111..138
NoneNo IPR availableGENE3D6.10.140.1230coord: 3..173
e-value: 2.0E-38
score: 134.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..191
NoneNo IPR availablePANTHERPTHR10476:SF57ESCRT-RELATED PROTEIN CHMP1A-RELATEDcoord: 5..203
NoneNo IPR availablePANTHERPTHR10476CHARGED MULTIVESICULAR BODY PROTEINcoord: 5..203
IPR005024Snf7 familyPFAMPF03357Snf7coord: 11..176
e-value: 1.3E-11
score: 44.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010478.1Sed0010478.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032509 endosome transport via multivesicular body sorting pathway
biological_process GO:0045324 late endosome to vacuole transport
biological_process GO:0015031 protein transport
biological_process GO:0007034 vacuolar transport
cellular_component GO:0000815 ESCRT III complex
cellular_component GO:0005771 multivesicular body