Sed0010476 (gene) Chayote v1

Overview


Name	Sed0010476
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein transport protein SEC13
Location	LG07: 11056283 .. 11057161 (+)
RNA-Seq Expression	Sed0010476
Synteny	Sed0010476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCTCAGAAGATAGAAAGTGGCCACCAGGATACGGTCCATGATATTGCGATGGATTATTATGGGAAGCGTCTTGCAACAGCTTCCTCTGACCAGACCATTAAGATAATTGGAGTCAGCAATTCTGCTTCGCAGCATCTAGCCACGCTTACGGGTCACCAAGGATCAGTTTGGCAGGCGGCTTGGGCGCACCCAAAATTCGGGTCCTTGCTGGCTTCGTGTTCTTACGATGGACGTGTGATTATATGGAAGGAGGGAAATCAGAATGAGTGGACTCAAGCCCATGTTTTTTATGATCATAAGTCTTCGGTTAACTCGATCGCCTAGGCTCCTCATGAACAGGGTCTATGTCTGGCATGTGGTTCATCTGATGGGAATATCTCTGTATTCACTGCAAGGCAGGATGGTGGTTGGGATACAACAAGGATCGACCAAGCTCATCCACTTGGTGTCACGTCGATCTCTTGGGCTCCTTCGTCTGCGCCGGGTTCTCTTGTTGGTTCTGGTTTGGTTGATTCTGTTCAAAAGCTTTGCTCTAGTGGTTGTGATAACACTGTGAAGGTTGTGAAACCGTATAATGGGATTTGGAAGATGGACTGTTTCCCTGCATTGCAAATGCATACTGATTGGGTTAGGGATGTTGCATGGGCACCAAACCTCGGGCTACCGAAATCTACGATTGCAAGTTCTTCTCAGGATGGGAAAGTCATCATATGGACTGTTGCCAGGGAAGGGGATTAATGGGAAGGGAAGATATTGAATGATTTCAAAACTACTGTCTGGAGGGTCTCATGGTCTTTGACTGGAAACATCTTGGCTGTGGCAGATGGGAACAACAATGTGACTTTGTGGAAGGAAGCTGTCGATGGGGATTAG

mRNA sequence

ATGCCTGCTCAGAAGATAGAAAGTGGCCACCAGGATACGGTCCATGATATTGCGATGGATTATTATGGGAAGCGTCTTGCAACAGCTTCCTCTGACCAGACCATTAAGATAATTGGAGTCAGCAATTCTGCTTCGCAGCATCTAGCCACGCTTACGGGTCACCAAGGATCAGTTTGGCAGGCGGCTTGGGCGCACCCAAAATTCGGGTCCTTGCTGGCTTCGTGTTCTTACGATGGACGTGTGATTATATGGAAGGAGGGAAATCAGAATGAGTGGACTCAAGCCCATGTTTTTTATGATCATAAGTCTTCGGGTCTATGTCTGGCATGTGGTTCATCTGATGGGAATATCTCTGTATTCACTGCAAGGCAGGATGGTGGTTGGGATACAACAAGGATCGACCAAGCTCATCCACTTGGTGTCACGTCGATCTCTTGGGCTCCTTCGTCTGCGCCGGGTTCTCTTGTTGGTTCTGGTTTGGTTGATTCTGTTCAAAAGCTTTGCTCTAGTGGTTGTGATAACACTGTGAAGGTTGTGAAACCGTATAATGGGATTTGGAAGATGGACTGTTTCCCTGCATTGCAAATGCATACTGATTGGGTTAGGGATGTTGCATGGGCACCAAACCTCGGGCTACCGAAATCTACGATTGCAAGTTCTTCTCAGGATGGGAAAGTCATCATATGGACTATATTGAATGATTTCAAAACTACTGTCTGGAGGGTCTCATGGTCTTTGACTGGAAACATCTTGGCTGTGGCAGATGGGAACAACAATGTGACTTTGTGGAAGGAAGCTGTCGATGGGGATTAG

Coding sequence (CDS)

ATGCCTGCTCAGAAGATAGAAAGTGGCCACCAGGATACGGTCCATGATATTGCGATGGATTATTATGGGAAGCGTCTTGCAACAGCTTCCTCTGACCAGACCATTAAGATAATTGGAGTCAGCAATTCTGCTTCGCAGCATCTAGCCACGCTTACGGGTCACCAAGGATCAGTTTGGCAGGCGGCTTGGGCGCACCCAAAATTCGGGTCCTTGCTGGCTTCGTGTTCTTACGATGGACGTGTGATTATATGGAAGGAGGGAAATCAGAATGAGTGGACTCAAGCCCATGTTTTTTATGATCATAAGTCTTCGGGTCTATGTCTGGCATGTGGTTCATCTGATGGGAATATCTCTGTATTCACTGCAAGGCAGGATGGTGGTTGGGATACAACAAGGATCGACCAAGCTCATCCACTTGGTGTCACGTCGATCTCTTGGGCTCCTTCGTCTGCGCCGGGTTCTCTTGTTGGTTCTGGTTTGGTTGATTCTGTTCAAAAGCTTTGCTCTAGTGGTTGTGATAACACTGTGAAGGTTGTGAAACCGTATAATGGGATTTGGAAGATGGACTGTTTCCCTGCATTGCAAATGCATACTGATTGGGTTAGGGATGTTGCATGGGCACCAAACCTCGGGCTACCGAAATCTACGATTGCAAGTTCTTCTCAGGATGGGAAAGTCATCATATGGACTATATTGAATGATTTCAAAACTACTGTCTGGAGGGTCTCATGGTCTTTGACTGGAAACATCTTGGCTGTGGCAGATGGGAACAACAATGTGACTTTGTGGAAGGAAGCTGTCGATGGGGATTAG

Protein sequence

MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQAAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSSGLCLACGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCSSGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIWTILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD

Homology

[Close]

BLAST of Sed0010476 vs. NCBI nr
Match: XP_022152847.1 (protein transport protein SEC13 homolog B-like [Momordica charantia])

HSP 1 Score: 530.4 bits (1365), Expect = 9.0e-147
Identity = 255/292 (87.33%), Postives = 263/292 (90.07%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDTVHD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIESGHQDTVHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVF DHKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFDDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTARQDGGWDT+RIDQAHPLGVTS+SWAPS+APG+LVGSGLVD V KLCS
Sbjct: 121 CGSSDGNISVFTARQDGGWDTSRIDQAHPLGVTSVSWAPSTAPGALVGSGLVDPVLKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGVWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           ILNDFKT VWRVSWSLTGNILAVADGNNNV+LWKEAVDGD
Sbjct: 241 TVAREGDQWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVSLWKEAVDGD 292

[Close]

BLAST of Sed0010476 vs. NCBI nr
Match: XP_023000376.1 (protein transport protein SEC13 homolog B-like [Cucurbita maxima])

HSP 1 Score: 527.7 bits (1358), Expect = 5.8e-146
Identity = 253/292 (86.64%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDTVHD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIESGHQDTVHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFY+HKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYEHKSSVNSIAWAPHEVGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTAR DGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSG VD VQKLCS
Sbjct: 121 CGSSDGNISVFTARPDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGFVDPVQKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           +LN+F+T VWRVSWSLTGNILAVADGNN VTLWKEAVDGD
Sbjct: 241 TVAREGDQWEGKVLNNFQTPVWRVSWSLTGNILAVADGNNAVTLWKEAVDGD 292

[Close]

BLAST of Sed0010476 vs. NCBI nr
Match: XP_022964559.1 (protein transport protein SEC13 homolog B-like [Cucurbita moschata] >XP_023515138.1 protein transport protein SEC13 homolog B-like [Cucurbita pepo subsp. pepo] >KAG7025827.1 Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 527.3 bits (1357), Expect = 7.6e-146
Identity = 252/292 (86.30%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDT+HD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIESGHQDTIHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFY+HKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYEHKSSVNSIAWAPHEVGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTAR DGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSG VD VQKLCS
Sbjct: 121 CGSSDGNISVFTARPDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGFVDPVQKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           +LN+F+T VWRVSWSLTGNILAVADGNN VTLWKEAVDGD
Sbjct: 241 TVAREGDQWEGKVLNNFQTPVWRVSWSLTGNILAVADGNNAVTLWKEAVDGD 292

[Close]

BLAST of Sed0010476 vs. NCBI nr
Match: KAG6593483.1 (Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 527.3 bits (1357), Expect = 7.6e-146
Identity = 252/292 (86.30%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDT+HD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 67  MPAQKIESGHQDTIHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 126

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFY+HKSS           GLCLA
Sbjct: 127 AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYEHKSSVNSIAWAPHEVGLCLA 186

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTAR DGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSG VD VQKLCS
Sbjct: 187 CGSSDGNISVFTARPDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGFVDPVQKLCS 246

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 247 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 306

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           +LN+F+T VWRVSWSLTGNILAVADGNN VTLWKEAVDGD
Sbjct: 307 TVAREGDQWEGKVLNNFQTPVWRVSWSLTGNILAVADGNNAVTLWKEAVDGD 358

[Close]

BLAST of Sed0010476 vs. NCBI nr
Match: XP_008462440.1 (PREDICTED: protein transport protein SEC13 homolog B-like [Cucumis melo] >KAA0051036.1 protein transport protein SEC13-like protein B-like [Cucumis melo var. makuwa] >TYK03831.1 protein transport protein SEC13-like protein B-like [Cucumis melo var. makuwa])

HSP 1 Score: 525.4 bits (1352), Expect = 2.9e-145
Identity = 252/292 (86.30%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKI+SGHQDTVHD++MDYYGKRLAT SSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIDSGHQDTVHDVSMDYYGKRLATVSSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEW+QAHVF DHKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWSQAHVFDDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTARQDGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSGLVD V KLCS
Sbjct: 121 CGSSDGNISVFTARQDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGLVDPVLKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           ILNDFKT VWRVSWSLTGNILAVADGNN+VTLWKE+VDGD
Sbjct: 241 TVAREGDQWEGKILNDFKTAVWRVSWSLTGNILAVADGNNSVTLWKESVDGD 292

[Close]

BLAST of Sed0010476 vs. ExPASy Swiss-Prot
Match: O64740 (Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC13B PE=1 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 2.6e-128
Identity = 219/293 (74.74%), Postives = 243/293 (82.94%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNS-ASQHLATLTGHQGSVW 60
           MP QKIE+GH+D VHD+ MDYYGKR+ATASSD TIKI GVSN+  SQ LATLTGH+G VW
Sbjct: 1   MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVW 60

Query: 61  QAAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCL 120
           + AWAHPK+GS+LASCSYDG+VI+WKEGNQN+WTQ HVF DHKSS           GL L
Sbjct: 61  EVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120

Query: 121 ACGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLC 180
           ACGSSDGNISVFTAR DGGWDT+RIDQAHP+GVTS+SWAP++APG+LV SGL+D V KL 
Sbjct: 121 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPATAPGALVSSGLLDPVYKLA 180

Query: 181 SSGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVII 240
           S GCDNTVKV K  NG WKMDCFPALQ HTDWVRDVAWAPNLGLPKSTIAS SQDGKVII
Sbjct: 181 SGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII 240

Query: 241 WT-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           WT           +L DF T VWRVSWSLTGN+LAV+DGNNNVT+WKEAVDG+
Sbjct: 241 WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGE 293

[Close]

BLAST of Sed0010476 vs. ExPASy Swiss-Prot
Match: Q9SRI1 (Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.3e-128
Identity = 217/293 (74.06%), Postives = 243/293 (82.94%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNS-ASQHLATLTGHQGSVW 60
           MP QKIE+GH DT+HD+ MDYYGKR+ATASSD TIKI GVSNS  SQHLATLTGH+G VW
Sbjct: 1   MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60

Query: 61  QAAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCL 120
           Q AWAHPKFGSLLASCSYDG++I+WKEGNQN+WTQAHVF DHK S           GL L
Sbjct: 61  QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120

Query: 121 ACGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLC 180
           ACG+SDGNISVF+AR DGGWDTT+IDQAHP+GVTS+SWAP++ PG+LV SG++D V KL 
Sbjct: 121 ACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSGMIDPVYKLA 180

Query: 181 SSGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVII 240
           S GCD+TVKV K  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS S+DGKVII
Sbjct: 181 SGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query: 241 WTI-----------LNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           WTI           L DFKT VWRVSWSLTGN+LAV+DGNNNVT+WKE+VDG+
Sbjct: 241 WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGE 293

[Close]

BLAST of Sed0010476 vs. ExPASy Swiss-Prot
Match: Q9D1M0 (Protein SEC13 homolog OS=Mus musculus OX=10090 GN=Sec13 PE=1 SV=3)

HSP 1 Score: 290.0 bits (741), Expect = 2.7e-77
Identity = 145/291 (49.83%), Postives = 189/291 (64.95%), Query Frame = 0


Query: 6   IESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQAAWAH 65
           +++ H+D +HD  MDYYG RLAT SSD+++KI  V N     +A L GH+G VWQ AWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLACGSSD 125
           P +G++LASCSYD +VIIWKE N   W + H    H SS           GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 127

Query: 126 GNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVG--SGLVDS-VQKLCSSG 185
           G IS+ T   +G W+  +I+ AH +G  ++SWAP+  PGSL+   SG   + ++K  S G
Sbjct: 128 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 187

Query: 186 CDNTVKVVK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIWT 245
           CDN +K+ +   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS SQDG+V IWT
Sbjct: 188 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 247

Query: 246 ------------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDG 270
                       +L+ F   VW VSWS+T NILAV+ G+N VTLWKE+VDG
Sbjct: 248 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295

[Close]

BLAST of Sed0010476 vs. ExPASy Swiss-Prot
Match: Q5XFW8 (Protein SEC13 homolog OS=Rattus norvegicus OX=10116 GN=Sec13 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.7e-77
Identity = 145/291 (49.83%), Postives = 189/291 (64.95%), Query Frame = 0


Query: 6   IESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQAAWAH 65
           +++ H+D +HD  MDYYG RLAT SSD+++KI  V N     +A L GH+G VWQ AWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLACGSSD 125
           P +G++LASCSYD +VIIWKE N   W + H    H SS           GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSD 127

Query: 126 GNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVG--SGLVDS-VQKLCSSG 185
           G IS+ T   +G W+  +I+ AH +G  ++SWAP+  PGSL+   SG   + ++K  S G
Sbjct: 128 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGG 187

Query: 186 CDNTVKVVK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIWT 245
           CDN +K+ +   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS SQDG+V IWT
Sbjct: 188 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 247

Query: 246 ------------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDG 270
                       +L+ F   VW VSWS+T NILAV+ G+N VTLWKE+VDG
Sbjct: 248 CDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295

[Close]

BLAST of Sed0010476 vs. ExPASy Swiss-Prot
Match: P55735 (Protein SEC13 homolog OS=Homo sapiens OX=9606 GN=SEC13 PE=1 SV=3)

HSP 1 Score: 289.3 bits (739), Expect = 4.6e-77
Identity = 144/291 (49.48%), Postives = 190/291 (65.29%), Query Frame = 0


Query: 6   IESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQAAWAH 65
           +++ H+D +HD  MDYYG RLAT SSD+++KI  V N     +A L GH+G VWQ AWAH
Sbjct: 8   VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67

Query: 66  PKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLACGSSD 125
           P +G++LASCSYD +VIIW+E N   W ++H    H SS           GL LACGSSD
Sbjct: 68  PMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 127

Query: 126 GNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVG--SGLVDS-VQKLCSSG 185
           G IS+ T   +G W+  +I+ AH +G  ++SWAP+  PGSL+   SG   + +++  S G
Sbjct: 128 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 187

Query: 186 CDNTVKVVK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIWT 245
           CDN +K+ K   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS SQDG+V IWT
Sbjct: 188 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 247

Query: 246 ------------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDG 270
                       +L+ F   VW VSWS+T NILAV+ G+N VTLWKE+VDG
Sbjct: 248 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295

[Close]

BLAST of Sed0010476 vs. ExPASy TrEMBL
Match: A0A6J1DHD2 (protein transport protein SEC13 homolog B-like OS=Momordica charantia OX=3673 GN=LOC111020468 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.4e-147
Identity = 255/292 (87.33%), Postives = 263/292 (90.07%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDTVHD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIESGHQDTVHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVF DHKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFDDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTARQDGGWDT+RIDQAHPLGVTS+SWAPS+APG+LVGSGLVD V KLCS
Sbjct: 121 CGSSDGNISVFTARQDGGWDTSRIDQAHPLGVTSVSWAPSTAPGALVGSGLVDPVLKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGVWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           ILNDFKT VWRVSWSLTGNILAVADGNNNV+LWKEAVDGD
Sbjct: 241 TVAREGDQWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVSLWKEAVDGD 292

[Close]

BLAST of Sed0010476 vs. ExPASy TrEMBL
Match: A0A6J1KFQ3 (protein transport protein SEC13 homolog B-like OS=Cucurbita maxima OX=3661 GN=LOC111494631 PE=3 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 2.8e-146
Identity = 253/292 (86.64%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDTVHD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIESGHQDTVHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFY+HKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYEHKSSVNSIAWAPHEVGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTAR DGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSG VD VQKLCS
Sbjct: 121 CGSSDGNISVFTARPDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGFVDPVQKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           +LN+F+T VWRVSWSLTGNILAVADGNN VTLWKEAVDGD
Sbjct: 241 TVAREGDQWEGKVLNNFQTPVWRVSWSLTGNILAVADGNNAVTLWKEAVDGD 292

[Close]

BLAST of Sed0010476 vs. ExPASy TrEMBL
Match: A0A6J1HNK7 (protein transport protein SEC13 homolog B-like OS=Cucurbita moschata OX=3662 GN=LOC111464548 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.7e-146
Identity = 252/292 (86.30%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKIESGHQDT+HD+AMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIESGHQDTIHDVAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFY+HKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYEHKSSVNSIAWAPHEVGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTAR DGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSG VD VQKLCS
Sbjct: 121 CGSSDGNISVFTARPDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGFVDPVQKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           +LN+F+T VWRVSWSLTGNILAVADGNN VTLWKEAVDGD
Sbjct: 241 TVAREGDQWEGKVLNNFQTPVWRVSWSLTGNILAVADGNNAVTLWKEAVDGD 292

[Close]

BLAST of Sed0010476 vs. ExPASy TrEMBL
Match: A0A5A7UA12 (Protein transport protein SEC13-like protein B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00230 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.4e-145
Identity = 252/292 (86.30%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKI+SGHQDTVHD++MDYYGKRLAT SSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIDSGHQDTVHDVSMDYYGKRLATVSSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEW+QAHVF DHKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWSQAHVFDDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTARQDGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSGLVD V KLCS
Sbjct: 121 CGSSDGNISVFTARQDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGLVDPVLKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           ILNDFKT VWRVSWSLTGNILAVADGNN+VTLWKE+VDGD
Sbjct: 241 TVAREGDQWEGKILNDFKTAVWRVSWSLTGNILAVADGNNSVTLWKESVDGD 292

[Close]

BLAST of Sed0010476 vs. ExPASy TrEMBL
Match: A0A1S3CHH1 (protein transport protein SEC13 homolog B-like OS=Cucumis melo OX=3656 GN=LOC103500788 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.4e-145
Identity = 252/292 (86.30%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQ 60
           MPAQKI+SGHQDTVHD++MDYYGKRLAT SSDQTIKIIGVSNSASQHLATLTGHQG VWQ
Sbjct: 1   MPAQKIDSGHQDTVHDVSMDYYGKRLATVSSDQTIKIIGVSNSASQHLATLTGHQGPVWQ 60

Query: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCLA 120
           AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEW+QAHVF DHKSS           GLCLA
Sbjct: 61  AAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWSQAHVFDDHKSSVNSIAWAPHELGLCLA 120

Query: 121 CGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLCS 180
           CGSSDGNISVFTARQDGGWDT+RIDQAHPLGVTS+SWAPSSAPG+LVGSGLVD V KLCS
Sbjct: 121 CGSSDGNISVFTARQDGGWDTSRIDQAHPLGVTSVSWAPSSAPGALVGSGLVDPVLKLCS 180

Query: 181 SGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVIIW 240
            GCDNTVKV KPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIAS+SQDGKVIIW
Sbjct: 181 GGCDNTVKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW 240

Query: 241 T-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           T           ILNDFKT VWRVSWSLTGNILAVADGNN+VTLWKE+VDGD
Sbjct: 241 TVAREGDQWEGKILNDFKTAVWRVSWSLTGNILAVADGNNSVTLWKESVDGD 292

[Close]

BLAST of Sed0010476 vs. TAIR 10
Match: AT2G30050.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 459.5 bits (1181), Expect = 1.8e-129
Identity = 219/293 (74.74%), Postives = 243/293 (82.94%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNS-ASQHLATLTGHQGSVW 60
           MP QKIE+GH+D VHD+ MDYYGKR+ATASSD TIKI GVSN+  SQ LATLTGH+G VW
Sbjct: 1   MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVW 60

Query: 61  QAAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCL 120
           + AWAHPK+GS+LASCSYDG+VI+WKEGNQN+WTQ HVF DHKSS           GL L
Sbjct: 61  EVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120

Query: 121 ACGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLC 180
           ACGSSDGNISVFTAR DGGWDT+RIDQAHP+GVTS+SWAP++APG+LV SGL+D V KL 
Sbjct: 121 ACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPATAPGALVSSGLLDPVYKLA 180

Query: 181 SSGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVII 240
           S GCDNTVKV K  NG WKMDCFPALQ HTDWVRDVAWAPNLGLPKSTIAS SQDGKVII
Sbjct: 181 SGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII 240

Query: 241 WT-----------ILNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           WT           +L DF T VWRVSWSLTGN+LAV+DGNNNVT+WKEAVDG+
Sbjct: 241 WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGE 293

[Close]

BLAST of Sed0010476 vs. TAIR 10
Match: AT3G01340.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 459.1 bits (1180), Expect = 2.4e-129
Identity = 217/293 (74.06%), Postives = 243/293 (82.94%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNS-ASQHLATLTGHQGSVW 60
           MP QKIE+GH DT+HD+ MDYYGKR+ATASSD TIKI GVSNS  SQHLATLTGH+G VW
Sbjct: 1   MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60

Query: 61  QAAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCL 120
           Q AWAHPKFGSLLASCSYDG++I+WKEGNQN+WTQAHVF DHK S           GL L
Sbjct: 61  QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120

Query: 121 ACGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLC 180
           ACG+SDGNISVF+AR DGGWDTT+IDQAHP+GVTS+SWAP++ PG+LV SG++D V KL 
Sbjct: 121 ACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSGMIDPVYKLA 180

Query: 181 SSGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVII 240
           S GCD+TVKV K  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS S+DGKVII
Sbjct: 181 SGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query: 241 WTI-----------LNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           WTI           L DFKT VWRVSWSLTGN+LAV+DGNNNVT+WKE+VDG+
Sbjct: 241 WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGE 293

[Close]

BLAST of Sed0010476 vs. TAIR 10
Match: AT3G01340.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 459.1 bits (1180), Expect = 2.4e-129
Identity = 217/293 (74.06%), Postives = 243/293 (82.94%), Query Frame = 0


Query: 1   MPAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNS-ASQHLATLTGHQGSVW 60
           MP QKIE+GH DT+HD+ MDYYGKR+ATASSD TIKI GVSNS  SQHLATLTGH+G VW
Sbjct: 1   MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60

Query: 61  QAAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSS-----------GLCL 120
           Q AWAHPKFGSLLASCSYDG++I+WKEGNQN+WTQAHVF DHK S           GL L
Sbjct: 61  QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120

Query: 121 ACGSSDGNISVFTARQDGGWDTTRIDQAHPLGVTSISWAPSSAPGSLVGSGLVDSVQKLC 180
           ACG+SDGNISVF+AR DGGWDTT+IDQAHP+GVTS+SWAP++ PG+LV SG++D V KL 
Sbjct: 121 ACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSGMIDPVYKLA 180

Query: 181 SSGCDNTVKVVKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASSSQDGKVII 240
           S GCD+TVKV K  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS S+DGKVII
Sbjct: 181 SGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query: 241 WTI-----------LNDFKTTVWRVSWSLTGNILAVADGNNNVTLWKEAVDGD 271
           WTI           L DFKT VWRVSWSLTGN+LAV+DGNNNVT+WKE+VDG+
Sbjct: 241 WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGE 293

[Close]

BLAST of Sed0010476 vs. TAIR 10
Match: AT3G18140.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.3e-04
Identity = 31/108 (28.70%), Postives = 49/108 (45.37%), Query Frame = 0


Query: 2   PAQKIESGHQDTVHDIAMDYYGKRLATASSDQTIKIIGVSNSASQHLATLTGHQGSVWQA 61
           P  K+++ H   +    +    K LATASSD+T+KI  V     + +  LTGHQ  VW  
Sbjct: 203 PLHKLQA-HNGHILKCLLSPANKYLATASSDKTVKIWNVDGFKLEKV--LTGHQRWVWDC 262

Query: 62  AWAHPKFGSLLASCSYDGRVIIWKEGNQNEWTQAHVFYDHKSSGLCLA 110
            ++    G  L + S D    +W   +     +  V+  H  + +C A
Sbjct: 263 VFSVD--GEFLVTASSDMTARLW---SMPAGKEVKVYQGHHKATVCCA 302

The following BLAST results are available for this feature:

BLAST of Sed0010476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152847.1	9.0e-147	87.33	protein transport protein SEC13 homolog B-like [Momordica charantia]	[more]
XP_023000376.1	5.8e-146	86.64	protein transport protein SEC13 homolog B-like [Cucurbita maxima]	[more]
XP_022964559.1	7.6e-146	86.30	protein transport protein SEC13 homolog B-like [Cucurbita moschata] >XP_02351513...	[more]
KAG6593483.1	7.6e-146	86.30	Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_008462440.1	2.9e-145	86.30	PREDICTED: protein transport protein SEC13 homolog B-like [Cucumis melo] >KAA005...	[more]

BLAST of Sed0010476 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64740	2.6e-128	74.74	Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC...	[more]
Q9SRI1	3.3e-128	74.06	Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC...	[more]
Q9D1M0	2.7e-77	49.83	Protein SEC13 homolog OS=Mus musculus OX=10090 GN=Sec13 PE=1 SV=3	[more]
Q5XFW8	2.7e-77	49.83	Protein SEC13 homolog OS=Rattus norvegicus OX=10116 GN=Sec13 PE=1 SV=1	[more]
P55735	4.6e-77	49.48	Protein SEC13 homolog OS=Homo sapiens OX=9606 GN=SEC13 PE=1 SV=3	[more]

BLAST of Sed0010476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHD2	4.4e-147	87.33	protein transport protein SEC13 homolog B-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KFQ3	2.8e-146	86.64	protein transport protein SEC13 homolog B-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1HNK7	3.7e-146	86.30	protein transport protein SEC13 homolog B-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7UA12	1.4e-145	86.30	Protein transport protein SEC13-like protein B-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CHH1	1.4e-145	86.30	protein transport protein SEC13 homolog B-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0010476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30050.1	1.8e-129	74.74	transducin family protein / WD-40 repeat family protein	[more]
AT3G01340.1	2.4e-129	74.06	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G01340.2	2.4e-129	74.06	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G18140.1	5.3e-04	28.70	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 2..39 e-value: 0.47 score: 19.1 coord: 44..85 e-value: 1.1E-6 score: 38.2 coord: 231..264 e-value: 17.0 score: 9.2 coord: 187..230 e-value: 5.3E-4 score: 29.3 coord: 91..121 e-value: 180.0 score: 2.7 coord: 127..180 e-value: 0.9 score: 17.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 195..229 e-value: 0.04 score: 14.8 coord: 8..37 e-value: 0.0085 score: 16.9 coord: 46..85 e-value: 1.3E-4 score: 22.7
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 194..231 score: 10.441614
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 51..85 score: 9.773251
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 7..48 score: 8.937796
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..270 e-value: 2.1E-80 score: 272.0
None	No IPR available	PANTHER	PTHR11024:SF16	PROTEIN TRANSPORT PROTEIN SEC13 HOMOLOG B-LIKE	coord: 1..270
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 194..231 score: 8.781968
IPR037363	Sec13/Seh1 family	PANTHER	PTHR11024	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	coord: 1..270
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 8..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010476.1	Sed0010476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090114	COPII-coated vesicle budding
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030127	COPII vesicle coat
cellular_component	GO:0031080	nuclear pore outer ring
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0005198	structural molecule activity