Sed0010434 (gene) Chayote v1

Overview


Name	Sed0010434
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Clathrin light chain
Location	LG03: 27965762 .. 27966936 (-)
RNA-Seq Expression	Sed0010434
Synteny	Sed0010434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAAGCATTGGCGCGGAAAGATTCATTGACTATTGGCGGGCGGCGGCGGGAGAAACAAAGTACGCAAAGGCCATGTCAACCTTCGCCGGAACTCCTCCGTTCGAAGCTTCGCCGGAACAGAACGGCAAGGGCTTTGCTGGAGGTTTTGGCGAATCCGACGGGCCGATCCTCTCCTCTCCGACGGCGATGGAGCCGGAGGAAGGATTCCCTTTGAGAGAATGGCGCAGGTGAGACAATTCTCCTAAACCTGTTCGCGATTATTGACATTAGATTTTAAGGTAAGGTCAACCCGTGAATCAAATATTGGAAATCCATCCCTTAATGGCAGATTGAATGCGATTCGATTGGAAGAGAAACAGAAGTGGGAGAAGGCGGTGTTGCAAGAGATCATCGATGAGGCTGATCACTATAAAGTTGACTTCTACACCACCCGAAACCTTGCTGTTCATAATACCAAAGCTTCCAATAGGGTTAAGGAGAAGGTAGTTAAATTCAGTTCAAGTTTAGTATTTTAAATTGAATGCTTCACGACTACATTTGAACTTCATATGACAGCAATATCTAGCAGACCGAGACAAGTTCCACGCCCAAGCTGAGAACAATTATTGGAAGGCAATTGCAGAACTAATCCCCAATGAGGTTCCATCCATACAACCAAGCCAAAGGGGGAACAAGAACCCCGCTATCGATGTTATTCAAGGTCCCAAGCCCGGCAAACCGACTGATCTCTCCAGAATGCGTCAAATTCATTTGAAGCTCAAACACAACACCCCACTTCACATGAAGCCTAAACCGCCACCATCACAATCCAAAACAGACCCCAAACAGGACTCTTTTGCGGCTGCTGGCGCAACTCCGACTGCTTGAGATTGGCTGGTATTACACATTATACTCCCTCTTCTGAATGTCCAAGAACAACAACTCCATATCATGGGATCTTCATGTCTAGTAATAGACTGTTATATATAGTCAATAAATCACTTGAGAAATATAGCAAACTTTCAAGGTGAGCTACAAAACCCTTCTAAAATCCTAATCTGTGCCAGATTTTGGTGGATTGTTGTATTTGGATGGTTGTAACTGCTTCAGGTTTTTTTTTCATCTCTGTGAACATATATGTTGCTTCTATTCTAAATAATCAATTGAGCAGTGTTAGTACATTCCCTTTGTAA

mRNA sequence

GAGAGAAGCATTGGCGCGGAAAGATTCATTGACTATTGGCGGGCGGCGGCGGGAGAAACAAAGTACGCAAAGGCCATGTCAACCTTCGCCGGAACTCCTCCGTTCGAAGCTTCGCCGGAACAGAACGGCAAGGGCTTTGCTGGAGGTTTTGGCGAATCCGACGGGCCGATCCTCTCCTCTCCGACGGCGATGGAGCCGGAGGAAGGATTCCCTTTGAGAGAATGGCGCAGATTGAATGCGATTCGATTGGAAGAGAAACAGAAGTGGGAGAAGGCGGTGTTGCAAGAGATCATCGATGAGGCTGATCACTATAAAGTTGACTTCTACACCACCCGAAACCTTGCTGTTCATAATACCAAAGCTTCCAATAGGGTTAAGGAGAAGCAATATCTAGCAGACCGAGACAAGTTCCACGCCCAAGCTGAGAACAATTATTGGAAGGCAATTGCAGAACTAATCCCCAATGAGGTTCCATCCATACAACCAAGCCAAAGGGGGAACAAGAACCCCGCTATCGATGTTATTCAAGGTCCCAAGCCCGGCAAACCGACTGATCTCTCCAGAATGCGTCAAATTCATTTGAAGCTCAAACACAACACCCCACTTCACATGAAGCCTAAACCGCCACCATCACAATCCAAAACAGACCCCAAACAGGACTCTTTTGCGGCTGCTGGCGCAACTCCGACTGCTTGAGATTGGCTGGTATTACACATTATACTCCCTCTTCTGAATGTCCAAGAACAACAACTCCATATCATGGGATCTTCATGTCTAGTAATAGACTGTTATATATAGTCAATAAATCACTTGAGAAATATAGCAAACTTTCAAGGTGAGCTACAAAACCCTTCTAAAATCCTAATCTGTGCCAGATTTTGGTGGATTGTTGTATTTGGATGGTTGTAACTGCTTCAGGTTTTTTTTTCATCTCTGTGAACATATATGTTGCTTCTATTCTAAATAATCAATTGAGCAGTGTTAGTACATTCCCTTTGTAA

Coding sequence (CDS)

ATGTCAACCTTCGCCGGAACTCCTCCGTTCGAAGCTTCGCCGGAACAGAACGGCAAGGGCTTTGCTGGAGGTTTTGGCGAATCCGACGGGCCGATCCTCTCCTCTCCGACGGCGATGGAGCCGGAGGAAGGATTCCCTTTGAGAGAATGGCGCAGATTGAATGCGATTCGATTGGAAGAGAAACAGAAGTGGGAGAAGGCGGTGTTGCAAGAGATCATCGATGAGGCTGATCACTATAAAGTTGACTTCTACACCACCCGAAACCTTGCTGTTCATAATACCAAAGCTTCCAATAGGGTTAAGGAGAAGCAATATCTAGCAGACCGAGACAAGTTCCACGCCCAAGCTGAGAACAATTATTGGAAGGCAATTGCAGAACTAATCCCCAATGAGGTTCCATCCATACAACCAAGCCAAAGGGGGAACAAGAACCCCGCTATCGATGTTATTCAAGGTCCCAAGCCCGGCAAACCGACTGATCTCTCCAGAATGCGTCAAATTCATTTGAAGCTCAAACACAACACCCCACTTCACATGAAGCCTAAACCGCCACCATCACAATCCAAAACAGACCCCAAACAGGACTCTTTTGCGGCTGCTGGCGCAACTCCGACTGCTTGA

Protein sequence

MSTFAGTPPFEASPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEVPSIQPSQRGNKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQSKTDPKQDSFAAAGATPTA

Homology

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BLAST of Sed0010434 vs. NCBI nr
Match: XP_022151477.1 (clathrin light chain 2-like [Momordica charantia])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 156/207 (75.36%), Postives = 175/207 (84.54%), Query Frame = 0


Query: 2   STFAGTPPFEA-SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEE 61
           S F+ +  F A SPEQNGKGF GGF ES+GPILSSP  MEPEEGFPLREWRRLNAIRLEE
Sbjct: 74  SNFSPSGGFSAFSPEQNGKGFDGGFEESEGPILSSPAEMEPEEGFPLREWRRLNAIRLEE 133

Query: 62  KQKWEKAVLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNY 121
           K+K EK +LQEIIDEAD YK+DFY  R LA+ N KASNR KEKQYLA+R+KFHA+A+ NY
Sbjct: 134 KEKREKELLQEIIDEADQYKIDFYRRRKLALDNNKASNRDKEKQYLANREKFHAEADKNY 193

Query: 122 WKAIAELIPNEVPSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTP 181
           WKAIAELIPNEVP+I+  Q+G K+    PAI VIQGPKPGKPTDLSRMRQIHLKLK NTP
Sbjct: 194 WKAIAELIPNEVPTIE--QKGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIHLKLKRNTP 253

Query: 182 LHMKPKPPP-SQSKTDPKQDSFAAAGA 203
           LHM+PKPPP S+SKTDPK+DS +AA A
Sbjct: 254 LHMRPKPPPSSESKTDPKRDSSSAAAA 278

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BLAST of Sed0010434 vs. NCBI nr
Match: TYJ96292.1 (clathrin light chain 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-75
Identity = 151/198 (76.26%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K EK +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKKEKELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIIVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K++ K+DS +AAGAT TA
Sbjct: 255 KSESKKDS-SAAGATLTA 269

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BLAST of Sed0010434 vs. NCBI nr
Match: XP_008449287.1 (PREDICTED: clathrin light chain 2-like [Cucumis melo] >KAA0045034.1 clathrin light chain 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-74
Identity = 150/198 (75.76%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K EK +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKKEKELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIIVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K++ K+DS +AAGAT  A
Sbjct: 255 KSESKKDS-SAAGATLAA 269

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BLAST of Sed0010434 vs. NCBI nr
Match: XP_004147885.1 (clathrin light chain 2 [Cucumis sativus] >KGN54369.1 hypothetical protein Csa_018069 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 7.8e-74
Identity = 149/198 (75.25%), Postives = 172/198 (86.87%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K E  +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKREMELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K + K+DS +AAGAT  A
Sbjct: 255 KAESKKDS-SAAGATLAA 269

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BLAST of Sed0010434 vs. NCBI nr
Match: XP_038882671.1 (clathrin light chain 2-like [Benincasa hispida] >XP_038882672.1 clathrin light chain 2-like [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 150/201 (74.63%), Postives = 170/201 (84.58%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           SP+QNGKGF GG+GESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK K EK +L+EI
Sbjct: 79  SPQQNGKGFDGGYGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKLKREKELLEEI 138

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ NTK SNR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 139 IDEADQYKIEFYRRRKLALDNTKTSNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 198

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPK---PPP 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQI LKLKHNTPLHMKPK   PPP
Sbjct: 199 PTIE--QRGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIQLKLKHNTPLHMKPKQPPPPP 258

Query: 193 SQSKTDPKQDSFAAAGATPTA 207
            + K++ K+DS +AAG T  A
Sbjct: 259 VEPKSESKKDS-SAAGMTSAA 276

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BLAST of Sed0010434 vs. ExPASy Swiss-Prot
Match: O04209 (Clathrin light chain 2 OS=Arabidopsis thaliana OX=3702 GN=CLC2 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-49
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 0


Query: 8   PPFEASPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKA 67
           P  +     NG G  G  G+ DGPIL  P+ ME +EGF LREWRR NAI+LEEK+K EK 
Sbjct: 52  PSSDYGAYSNGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKE 111

Query: 68  VLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAEL 127
           +L++II+EAD YK +F+    +   N KA+NR KEK YL +++KF+A++  NYWKAIAEL
Sbjct: 112 LLKQIIEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAEL 171

Query: 128 IPNEVPSIQ-----PSQRGNKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMK-- 187
           +P EVP+I+       Q+  K P + VIQGPKPGKPTDL+RMRQI +KLKHN P H+K  
Sbjct: 172 VPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLT 231

Query: 188 PKPPPSQSKTDPK 194
            +PP  ++   PK
Sbjct: 232 SQPPSEEAAAPPK 244

[Close]

BLAST of Sed0010434 vs. ExPASy Swiss-Prot
Match: F4J5M9 (Clathrin light chain 3 OS=Arabidopsis thaliana OX=3702 GN=At3g51890 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.0e-49
Identity = 101/179 (56.42%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 14  PEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEII 73
           PE         F +++  IL  P+AME EEGF LREWRRLNA+RLEEK+K EK ++Q+I+
Sbjct: 67  PETQSPPSINSFDDTNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQIL 126

Query: 74  DEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEVP 133
           + A+ YK +FY+ RN+ + N K  NR KEK +L +++KF+A+A+ N WKAIAELIP EVP
Sbjct: 127 EAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVP 186

Query: 134 SIQPSQRGNKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQSKTDP 193
            I+      K   I VIQGPKPGKPTDLSRMRQ+  KLKHN P HMKPK  PS S  DP
Sbjct: 187 VIENRGNKKKTATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPK-LPSPSGADP 244

[Close]

BLAST of Sed0010434 vs. ExPASy Swiss-Prot
Match: Q9SKU1 (Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.3e-46
Identity = 106/195 (54.36%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 9   PFEAS-PEQNGKGFAGGFG-----ESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQ 68
           PFE+S  + NG G  GG G      SDGPIL  P  M  EEGF  REWRRLN I LEEK+
Sbjct: 70  PFESSVNDANGNG--GGSGGDAIFASDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKE 129

Query: 69  KWEKAVLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWK 128
           K EK +  +II EA+ +K  FY  R+  +   K  NR KEK Y A+++KFH + + +YWK
Sbjct: 130 KKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWK 189

Query: 129 AIAELIPNEVPSIQPSQRG----NKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLH 188
           AIAELIP EVP+I+  +RG    +K P+++VIQGPKPGKPTDL RMRQI LKLK N P H
Sbjct: 190 AIAELIPREVPNIE-KKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPH 249

Query: 189 MKPKPPPSQSKTDPK 194
           M P PPP++   D K
Sbjct: 250 MMPPPPPAKDAKDGK 260

[Close]

BLAST of Sed0010434 vs. ExPASy Swiss-Prot
Match: Q5Z402 (Clathrin light chain 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0731800 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-42
Identity = 98/183 (53.55%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 14  PEQNGKGFAGGFGESD---GPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQ 73
           PE NG      F   D   GP+L  P  M  +EGF LREWRR NAI LEEK+K EK +  
Sbjct: 58  PEANGSLHDDPFAAPDNDNGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRN 117

Query: 74  EIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPN 133
           +II +A  +K  F   R L V  +K  NR +EK YLA+++KFHA A+  YWKAI+ELIP+
Sbjct: 118 QIILDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQEKFHAGADKQYWKAISELIPH 177

Query: 134 EVPSIQPSQRG-------NKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKP 187
           E+ +I+  +RG        K P I VIQGPKPGKPTD+SRMRQI LKLKH  P HMKP P
Sbjct: 178 EIANIE--KRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMRQILLKLKHTPPPHMKPPP 237

[Close]

BLAST of Sed0010434 vs. ExPASy Swiss-Prot
Match: Q7XKE9 (Clathrin light chain 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0679100 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-40
Identity = 94/189 (49.74%), Postives = 120/189 (63.49%), Query Frame = 0


Query: 9   PFEASPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAV 68
           PF   PE +G          DGPIL  P  M  EEG  LREWRR NAI LEEK++ EK +
Sbjct: 83  PFSPDPELDG---------GDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEKEL 142

Query: 69  LQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELI 128
             +I+ EA+ +K  FY  R       K  NR +EK ++A ++KFHA+A+  YWK+I+ELI
Sbjct: 143 RAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFHAEADKQYWKSISELI 202

Query: 129 PNEVPSIQPSQRG----NKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPP 188
           P+E+ +I+  +RG    +K P+I VIQGPKPGKPTDLSRMRQI +KLKH  P HM   PP
Sbjct: 203 PHEIATIE--KRGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKHAPPPHMMQPPP 260

Query: 189 PSQSKTDPK 194
            S +K   K
Sbjct: 263 ASAAKDGAK 260

[Close]

BLAST of Sed0010434 vs. ExPASy TrEMBL
Match: A0A6J1DDM4 (Clathrin light chain OS=Momordica charantia OX=3673 GN=LOC111019409 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.2e-76
Identity = 156/207 (75.36%), Postives = 175/207 (84.54%), Query Frame = 0


Query: 2   STFAGTPPFEA-SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEE 61
           S F+ +  F A SPEQNGKGF GGF ES+GPILSSP  MEPEEGFPLREWRRLNAIRLEE
Sbjct: 74  SNFSPSGGFSAFSPEQNGKGFDGGFEESEGPILSSPAEMEPEEGFPLREWRRLNAIRLEE 133

Query: 62  KQKWEKAVLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNY 121
           K+K EK +LQEIIDEAD YK+DFY  R LA+ N KASNR KEKQYLA+R+KFHA+A+ NY
Sbjct: 134 KEKREKELLQEIIDEADQYKIDFYRRRKLALDNNKASNRDKEKQYLANREKFHAEADKNY 193

Query: 122 WKAIAELIPNEVPSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTP 181
           WKAIAELIPNEVP+I+  Q+G K+    PAI VIQGPKPGKPTDLSRMRQIHLKLK NTP
Sbjct: 194 WKAIAELIPNEVPTIE--QKGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIHLKLKRNTP 253

Query: 182 LHMKPKPPP-SQSKTDPKQDSFAAAGA 203
           LHM+PKPPP S+SKTDPK+DS +AA A
Sbjct: 254 LHMRPKPPPSSESKTDPKRDSSSAAAA 278

[Close]

BLAST of Sed0010434 vs. ExPASy TrEMBL
Match: A0A5D3B8W6 (Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00900 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 151/198 (76.26%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K EK +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKKEKELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIIVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K++ K+DS +AAGAT TA
Sbjct: 255 KSESKKDS-SAAGATLTA 269

[Close]

BLAST of Sed0010434 vs. ExPASy TrEMBL
Match: A0A5A7TPG9 (Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00190 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.8e-75
Identity = 150/198 (75.76%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K EK +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKKEKELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIIVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K++ K+DS +AAGAT  A
Sbjct: 255 KSESKKDS-SAAGATLAA 269

[Close]

BLAST of Sed0010434 vs. ExPASy TrEMBL
Match: A0A1S3BLP9 (Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103491206 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.8e-75
Identity = 150/198 (75.76%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K EK +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKKEKELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIIVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K++ K+DS +AAGAT  A
Sbjct: 255 KSESKKDS-SAAGATLAA 269

[Close]

BLAST of Sed0010434 vs. ExPASy TrEMBL
Match: A0A0A0KZX1 (Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_4G308590 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.8e-74
Identity = 149/198 (75.25%), Postives = 172/198 (86.87%), Query Frame = 0


Query: 13  SPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEI 72
           S +QNGKGF GGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEK+K E  +L+EI
Sbjct: 75  SSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKEKREMELLEEI 134

Query: 73  IDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEV 132
           IDEAD YK++FY  R LA+ ++KA+NR KEKQYLA+++KFHA+A+ NYWKAIAELIPNEV
Sbjct: 135 IDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEADKNYWKAIAELIPNEV 194

Query: 133 PSIQPSQRGNKN----PAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQS 192
           P+I+  QRG K+    PAI VIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPP++ 
Sbjct: 195 PTIE--QRGKKDKEKKPAIVVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPAEP 254

Query: 193 KTDPKQDSFAAAGATPTA 207
           K + K+DS +AAGAT  A
Sbjct: 255 KAESKKDS-SAAGATLAA 269

[Close]

BLAST of Sed0010434 vs. TAIR 10
Match: AT2G40060.1 (Clathrin light chain protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-50
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 0


Query: 8   PPFEASPEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKA 67
           P  +     NG G  G  G+ DGPIL  P+ ME +EGF LREWRR NAI+LEEK+K EK 
Sbjct: 52  PSSDYGAYSNGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKE 111

Query: 68  VLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAEL 127
           +L++II+EAD YK +F+    +   N KA+NR KEK YL +++KF+A++  NYWKAIAEL
Sbjct: 112 LLKQIIEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAEL 171

Query: 128 IPNEVPSIQ-----PSQRGNKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMK-- 187
           +P EVP+I+       Q+  K P + VIQGPKPGKPTDL+RMRQI +KLKHN P H+K  
Sbjct: 172 VPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLT 231

Query: 188 PKPPPSQSKTDPK 194
            +PP  ++   PK
Sbjct: 232 SQPPSEEAAAPPK 244

[Close]

BLAST of Sed0010434 vs. TAIR 10
Match: AT3G51890.1 (Clathrin light chain protein )

HSP 1 Score: 194.9 bits (494), Expect = 6.4e-50
Identity = 101/179 (56.42%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 14  PEQNGKGFAGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQKWEKAVLQEII 73
           PE         F +++  IL  P+AME EEGF LREWRRLNA+RLEEK+K EK ++Q+I+
Sbjct: 67  PETQSPPSINSFDDTNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQIL 126

Query: 74  DEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWKAIAELIPNEVP 133
           + A+ YK +FY+ RN+ + N K  NR KEK +L +++KF+A+A+ N WKAIAELIP EVP
Sbjct: 127 EAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVP 186

Query: 134 SIQPSQRGNKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLHMKPKPPPSQSKTDP 193
            I+      K   I VIQGPKPGKPTDLSRMRQ+  KLKHN P HMKPK  PS S  DP
Sbjct: 187 VIENRGNKKKTATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPK-LPSPSGADP 244

[Close]

BLAST of Sed0010434 vs. TAIR 10
Match: AT2G20760.1 (Clathrin light chain protein )

HSP 1 Score: 184.9 bits (468), Expect = 6.6e-47
Identity = 106/195 (54.36%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 9   PFEAS-PEQNGKGFAGGFG-----ESDGPILSSPTAMEPEEGFPLREWRRLNAIRLEEKQ 68
           PFE+S  + NG G  GG G      SDGPIL  P  M  EEGF  REWRRLN I LEEK+
Sbjct: 70  PFESSVNDANGNG--GGSGGDAIFASDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKE 129

Query: 69  KWEKAVLQEIIDEADHYKVDFYTTRNLAVHNTKASNRVKEKQYLADRDKFHAQAENNYWK 128
           K EK +  +II EA+ +K  FY  R+  +   K  NR KEK Y A+++KFH + + +YWK
Sbjct: 130 KKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWK 189

Query: 129 AIAELIPNEVPSIQPSQRG----NKNPAIDVIQGPKPGKPTDLSRMRQIHLKLKHNTPLH 188
           AIAELIP EVP+I+  +RG    +K P+++VIQGPKPGKPTDL RMRQI LKLK N P H
Sbjct: 190 AIAELIPREVPNIE-KKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPH 249

Query: 189 MKPKPPPSQSKTDPK 194
           M P PPP++   D K
Sbjct: 250 MMPPPPPAKDAKDGK 260

The following BLAST results are available for this feature:

BLAST of Sed0010434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151477.1	1.1e-75	75.36	clathrin light chain 2-like [Momordica charantia]	[more]
TYJ96292.1	3.2e-75	76.26	clathrin light chain 2-like [Cucumis melo var. makuwa]	[more]
XP_008449287.1	1.2e-74	75.76	PREDICTED: clathrin light chain 2-like [Cucumis melo] >KAA0045034.1 clathrin lig...	[more]
XP_004147885.1	7.8e-74	75.25	clathrin light chain 2 [Cucumis sativus] >KGN54369.1 hypothetical protein Csa_01...	[more]
XP_038882671.1	1.9e-72	74.63	clathrin light chain 2-like [Benincasa hispida] >XP_038882672.1 clathrin light c...	[more]

BLAST of Sed0010434 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04209	1.8e-49	52.85	Clathrin light chain 2 OS=Arabidopsis thaliana OX=3702 GN=CLC2 PE=1 SV=1	[more]
F4J5M9	9.0e-49	56.42	Clathrin light chain 3 OS=Arabidopsis thaliana OX=3702 GN=At3g51890 PE=1 SV=1	[more]
Q9SKU1	9.3e-46	54.36	Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1	[more]
Q5Z402	3.7e-42	53.55	Clathrin light chain 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0731800 ...	[more]
Q7XKE9	5.8e-40	49.74	Clathrin light chain 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0679100 ...	[more]

BLAST of Sed0010434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDM4	5.2e-76	75.36	Clathrin light chain OS=Momordica charantia OX=3673 GN=LOC111019409 PE=3 SV=1	[more]
A0A5D3B8W6	1.5e-75	76.26	Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold782...	[more]
A0A5A7TPG9	5.8e-75	75.76	Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G...	[more]
A0A1S3BLP9	5.8e-75	75.76	Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103491206 PE=3 SV=1	[more]
A0A0A0KZX1	3.8e-74	75.25	Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_4G308590 PE=3 SV=1	[more]

BLAST of Sed0010434 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40060.1	1.3e-50	52.85	Clathrin light chain protein	[more]
AT3G51890.1	6.4e-50	56.42	Clathrin light chain protein	[more]
AT2G20760.1	6.6e-47	54.36	Clathrin light chain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000996	Clathrin light chain	PFAM	PF01086	Clathrin_lg_ch	coord: 35..175 e-value: 4.4E-12 score: 46.5
IPR000996	Clathrin light chain	PANTHER	PTHR10639	CLATHRIN LIGHT CHAIN	coord: 12..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR10639:SF24	CLATHRIN LIGHT CHAIN 3	coord: 12..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010434.1	Sed0010434.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048268	clathrin coat assembly
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030132	clathrin coat of coated pit
cellular_component	GO:0030130	clathrin coat of trans-Golgi network vesicle
molecular_function	GO:0032050	clathrin heavy chain binding
molecular_function	GO:0005198	structural molecule activity