Sed0010430 (gene) Chayote v1

Overview


Name	Sed0010430
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TFIIIC_sub6 domain-containing protein
Location	LG12: 4996373 .. 4999147 (+)
RNA-Seq Expression	Sed0010430
Synteny	Sed0010430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAAAATGATTCAAATATCAGTGGTAAAATTCATTGGGTTCTTCTTCTTTACGCCGCGATTCACCGCCTGCAAATCCGAAGCTGCGTGGTCTCACCGGCTTCGCTTTTCCGGCCAGATCCGTCCGGGAACCACCCCTTCGCCTATTCTCTGGCCAGATCTAACCTCTTTCTCGCTTCGATTTTGTAGAATTGAAACTTTGTCTGTTGTTTATTCAACCGGAGCTTCACGCACGGCCTCGAAACACCCACCGGCGGGTCACCGCCGCCACCGCCGCGTTCGGTAAACACTCGAACCTGTTTTGAATCTCTCTTCCCCTGAGAGGAACGATCACTGAAACACTGACTAATTCGATTTGTTTTTGTTTGTTTGTAAGGAACATGGAGAAAACTAGAGTTGATTCTCCTTCTAATGGCGAGGACGAAGAATTTGTATTGCTCGATCTTGGTGATGTATCGCTACTTAACATTCCACCCAATGCCCCATTTGTTCTATCTGTATGTTTCTGATTTCAAGCTCTATGAATTTTTCTCCATATCTCATTGTCTGCTTTCAACTTATAATGGTGAAGTTCAAATTGAAATGTTCATTACTTTAACAGGTTATAGAAATCTTCATTAATTTCACATATACGTATTTTACAGAATTTTGATTCGTTGTACGAATGCCCCATATAATGTTTCGTTCATTGAATGTTTGTATCTGTAACCTTACAAATTTACACTTCCTTAAGTGCTCCATGCCAACCCCTCCAACTTGTAAGTCCTTGCTTTACGTTTCCAAAGTTTGCTACTTCATATTGTACATTGATTAAAAATGGGACAGTGCGGTGGTAGAAGACTTGGGCTTTGGAGTTGTGCTCCTCTTAAGGTTGTAAGTTCGAGATTCACCTGTAATATTAATTTGTACACCTCATATGTCTTCATTCCTTTTATGTTCCCCAATGCCTTGTATTGGGACGGATTTGGTTACATCGGTAATAGTGGAGGGAAGCTCAGTGTTTTCAATTCTTAGCTACGTTAGAGGTGCAATGCCTGCCTATGTGCAAGGTGATGGCCATAGGTGAGGAAAGGCGATGGCCTTGAAAACACTGAGGAAGCTTCAATTTTTAGATTTAAAAAAAAAAGGATTTAAAAATTAATTAATAAAGATGGGTAATCCCCAGTTCATAAATTATTTAGATTTGAGGAAAAGAAGAGCAAATCACATTTGTTACAATCAAGTAAAAACTAATCTTCACAACTACTTAAAGTAAGATTTGTTTCTTTCCAAAATAAACTGATCTTTTTATAAGATCCAAGACCTAGACAGAACTTGTATTTTCTTGGTGTATCCTGTTGAGGGTTTGATAAGGGTTTTGATCATTATGTGAGGGAGCTTTAAGAATTAAATTTAAAATGTTATGTATGTATTTGGGCAAGCATTTTATCAATCTGTATAGTCTATTTAAAGATTTGATTAATTTGTTTTTGCAGGATTTGGACACCATGAATCCACTGTTGACTATATGTGATAAAATTAAGTTGGTAAGTCTTTAATTAATACTGAGCTCTGCACATTTTTCCACTTTGCAGTTTATTTGTTCTGAAGTTATCTTCTGTCTGCCTCTCTGTTTGAGAAGAACCTGGGTTTCACTGCCAGCTTGAGTTATTTATGATTTATCTAATATCTAGGTGAAATTGTGTCTTCTATGTGCTGTGAATTATGTTTTTGTTTTTTAAATGAAGCATGAATATTTTGTTAGACTTTTAGCAAATTTATTTAACTTTGGTATCAAAATACTTGTTCTTTATAAGATATTACATAGAAATAATTTAGTTTATTAGGTCTTTCACATTTTATGTTCTTACTAGGACTTGTTCTCTCTTTTTTAGGTGGGAGAATATGAAGAAACAATTGGCACATGTCTTACCTTTGGGGAAGGTGAGCAACCTCATTTTATTACATTACTTTGTAAATATAAGATACATATCTTATCCAGTCAGTCAGATTATTTCAAATCATCATTTGAACCAACTTGGCCCTATAGATCTACAAAGGAAATGTTAACCATTTGATTCCTAAACTCTCTAGGCGAGTTTTCGATTCCTTCATTGAACCATGGAAGGAAGCTAGTTTGGTTTTCGAACTTTAGAAATGTCGAATATGTTTTGCATAAACATTTCATTAGTGATTGTTGTTGAATTATATTAAACCACCAATCAATCCAAAAGCCTAAGCTGATGGATTGGGGTAAATTTAATTATATCAACCAACAATTGCAAACCCCCATTTAACACTGAAGTCATGTTCCGTTCTGCAGAGGAAGTCCCCATGGTTGAAGAAGAAGCTAGACTGTCTAAAACAAATCGTCCCGCTGCCGAAACAGCCGAACCAAAACCTGCTCCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACATAAGATTCTCAAATTTAAATTGTTGCTTGATTCTTCTGTTCCAAACTCTACAACTTAGGACACTAAAGAGCTCATATGTTATTTGTATATATACTTTGGGTTGGTCAGATAAAAAGAAGAAATTTTGGTTAGATTGAGTTAATAGTTTTATCAAATAGTTAGAGTTGCAAGCTTCGCTCATTTCTCTAATGCTTGGCTTAGGGACGGGCATGACTACCTTGTTTCAGGAAAAAAAAAAAATAGATAGAGTTGCAAGTGCAGAAAACTTAAAATGTTAGATGCATTATATATTCGTATCGTTCAAAATGTTGTACTTGGAATAACTTTTGAAATGATGAATACTGCTTTTAGTTTTA

mRNA sequence

TTAAAAATGATTCAAATATCAGTGGTAAAATTCATTGGGTTCTTCTTCTTTACGCCGCGATTCACCGCCTGCAAATCCGAAGCTGCGTGGTCTCACCGGCTTCGCTTTTCCGGCCAGATCCGTCCGGGAACCACCCCTTCGCCTATTCTCTGGCCAGATCTAACCTCTTTCTCGCTTCGATTTTGTAGAATTGAAACTTTGTCTGTTGTTTATTCAACCGGAGCTTCACGCACGGCCTCGAAACACCCACCGGCGGGTCACCGCCGCCACCGCCGCGTTCGGTAAACACTCGAACCTGTTTTGAATCTCTCTTCCCCTGAGAGGAACGATCACTGAAACACTGACTAATTCGATTTGTTTTTGTTTGTTTGTAAGGAACATGGAGAAAACTAGAGTTGATTCTCCTTCTAATGGCGAGGACGAAGAATTTGTATTGCTCGATCTTGGTGATGTATCGCTACTTAACATTCCACCCAATGCCCCATTTGTTCTATCTGATTTGGACACCATGAATCCACTGTTGACTATATGTGATAAAATTAAGTTGGTGGGAGAATATGAAGAAACAATTGGCACATGTCTTACCTTTGGGGAAGAGGAAGTCCCCATGGTTGAAGAAGAAGCTAGACTGTCTAAAACAAATCGTCCCGCTGCCGAAACAGCCGAACCAAAACCTGCTCCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACATAAGATTCTCAAATTTAAATTGTTGCTTGATTCTTCTGTTCCAAACTCTACAACTTAGGACACTAAAGAGCTCATATGTTATTTGTATATATACTTTGGGTTGGTCAGATAAAAAGAAGAAATTTTGGTTAGATTGAGTTAATAGTTTTATCAAATAGTTAGAGTTGCAAGCTTCGCTCATTTCTCTAATGCTTGGCTTAGGGACGGGCATGACTACCTTGTTTCAGGAAAAAAAAAAAATAGATAGAGTTGCAAGTGCAGAAAACTTAAAATGTTAGATGCATTATATATTCGTATCGTTCAAAATGTTGTACTTGGAATAACTTTTGAAATGATGAATACTGCTTTTAGTTTTA

Coding sequence (CDS)

ATGGAGAAAACTAGAGTTGATTCTCCTTCTAATGGCGAGGACGAAGAATTTGTATTGCTCGATCTTGGTGATGTATCGCTACTTAACATTCCACCCAATGCCCCATTTGTTCTATCTGATTTGGACACCATGAATCCACTGTTGACTATATGTGATAAAATTAAGTTGGTGGGAGAATATGAAGAAACAATTGGCACATGTCTTACCTTTGGGGAAGAGGAAGTCCCCATGGTTGAAGAAGAAGCTAGACTGTCTAAAACAAATCGTCCCGCTGCCGAAACAGCCGAACCAAAACCTGCTCCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACATAAGATTCTCAAATTTAAATTGTTGCTTGATTCTTCTGTTCCAAACTCTACAACTTAG

Protein sequence

MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLLLDSSVPNSTT

Homology

[Close]

BLAST of Sed0010430 vs. NCBI nr
Match: XP_038885696.1 (uncharacterized protein LOC120075999 [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 5.3e-44
Identity = 98/128 (76.56%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS  + E EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEY
Sbjct: 1   MEKATIDSACDVE-EEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEY 60

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEVP+VEEEA  S++NR + E AEPK APRKELKP+A+VHKILKFK L
Sbjct: 61  EETIGTCLTFAEEEVPVVEEEAEPSESNRRSREAAEPKQAPRKELKPVASVHKILKFK-L 120

Query: 121 LDSSVPNS 129
           LDS+VPNS
Sbjct: 121 LDSAVPNS 126

[Close]

BLAST of Sed0010430 vs. NCBI nr
Match: XP_022993830.1 (uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993832.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993833.1 uncharacterized protein LOC111489725 [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 97/132 (73.48%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEY
Sbjct: 1   MEKAAIDSASDGE-EEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEY 60

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEV MVEEEA  SKTNR + +  EP  APRK+LKP+A+VHKILKFKLL
Sbjct: 61  EETIGTCLTFAEEEVSMVEEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKLL 120

Query: 121 --LDSSVPNSTT 131
             +DS+VP+ST+
Sbjct: 121 DSVDSAVPDSTS 131

[Close]

BLAST of Sed0010430 vs. NCBI nr
Match: XP_023550663.1 (uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550664.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550665.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550666.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 3.4e-43
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS S+GE EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEY
Sbjct: 1   MEKAAIDSASDGE-EEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEY 60

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEV MVEEEA  S+TNR + +  EP  APRK+LKP+A+VHKILKFKLL
Sbjct: 61  EETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRKDLKPVASVHKILKFKLL 120

Query: 121 -----LDSSVPNSTT 131
                +DS+VP+ST+
Sbjct: 121 DSVDSVDSAVPDSTS 134

[Close]

BLAST of Sed0010430 vs. NCBI nr
Match: XP_022939121.1 (uncharacterized protein LOC111445121, partial [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEY
Sbjct: 143 MEKAAIDSASDGE-EEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEY 202

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEV MVEEEA  S+TNR + +  EP  APR++LKP+A+VHKILKFKLL
Sbjct: 203 EETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKLL 262

Query: 121 -----LDSSVPNSTT 131
                +DS+VP+ST+
Sbjct: 263 DSVDSVDSAVPDSTS 276

[Close]

BLAST of Sed0010430 vs. NCBI nr
Match: XP_022133708.1 (uncharacterized protein LOC111006225 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-42
Identity = 98/132 (74.24%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEKT +D  S+GE E++VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK+VGEY
Sbjct: 1   MEKTTIDPASDGE-EDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEY 60

Query: 61  EETIGTCLTFGEEEVPMV--EEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFK 120
           EETIGTCLTF EEEV +V  EEEA  S+T    AE   P  APRKELKPIA+VHKILKFK
Sbjct: 61  EETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFK 120

Query: 121 LLLDSSVPNSTT 131
           LL DS+VPNST+
Sbjct: 121 LLPDSAVPNSTS 131

[Close]

BLAST of Sed0010430 vs. ExPASy TrEMBL
Match: A0A6J1JTZ1 (uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.7e-44
Identity = 97/132 (73.48%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEY
Sbjct: 1   MEKAAIDSASDGE-EEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEY 60

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEV MVEEEA  SKTNR + +  EP  APRK+LKP+A+VHKILKFKLL
Sbjct: 61  EETIGTCLTFAEEEVSMVEEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKLL 120

Query: 121 --LDSSVPNSTT 131
             +DS+VP+ST+
Sbjct: 121 DSVDSAVPDSTS 131

[Close]

BLAST of Sed0010430 vs. ExPASy TrEMBL
Match: A0A6J1FF13 (uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC111445121 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.3e-43
Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEY
Sbjct: 143 MEKAAIDSASDGE-EEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEY 202

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEV MVEEEA  S+TNR + +  EP  APR++LKP+A+VHKILKFKLL
Sbjct: 203 EETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKLL 262

Query: 121 -----LDSSVPNSTT 131
                +DS+VP+ST+
Sbjct: 263 DSVDSVDSAVPDSTS 276

[Close]

BLAST of Sed0010430 vs. ExPASy TrEMBL
Match: A0A6J1BZW5 (uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006225 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 98/132 (74.24%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEKT +D  S+GE E++VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK+VGEY
Sbjct: 1   MEKTTIDPASDGE-EDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEY 60

Query: 61  EETIGTCLTFGEEEVPMV--EEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFK 120
           EETIGTCLTF EEEV +V  EEEA  S+T    AE   P  APRKELKPIA+VHKILKFK
Sbjct: 61  EETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFK 120

Query: 121 LLLDSSVPNSTT 131
           LL DS+VPNST+
Sbjct: 121 LLPDSAVPNSTS 131

[Close]

BLAST of Sed0010430 vs. ExPASy TrEMBL
Match: A0A1S4DTV8 (general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LOC103485483 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 95/127 (74.80%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS SN E EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDK K++GEY
Sbjct: 1   MEKATIDSASNAE-EEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEY 60

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEVP+VEEEA+ S+TN  + E AEPK A RKELK  A VHKILKFK L
Sbjct: 61  EETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFK-L 120

Query: 121 LDSSVPN 128
           LDS VP+
Sbjct: 121 LDSDVPS 125

[Close]

BLAST of Sed0010430 vs. ExPASy TrEMBL
Match: A0A0A0LML8 (TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39
Identity = 92/128 (71.88%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEY 60
           MEK  +DS S+ E EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDK K++GEY
Sbjct: 1   MEKATIDSASDVE-EEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEY 60

Query: 61  EETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLL 120
           EETIGTCLTF EEEVP+VEEEA+ S+T R + E  EP+ A +KELK +A VHKILKFK L
Sbjct: 61  EETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFK-L 120

Query: 121 LDSSVPNS 129
           LDS VP+S
Sbjct: 121 LDSDVPSS 126

[Close]

BLAST of Sed0010430 vs. TAIR 10
Match: AT3G15420.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-18
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 14  DEEFVLLDLGDVSL-LNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGE 73
           +EEFV++DL +VS  + IP +AP+ LS LDT+NP+LTI  KIKLVGEY ETIGTCL F E
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSE 61

Query: 74  EEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKL 120
                 +EE   S+   P           +K ++P+A +HKILKF+L
Sbjct: 62  ------KEEVSASENQMP----------HKKIIEPVAKLHKILKFRL 92

[Close]

BLAST of Sed0010430 vs. TAIR 10
Match: AT1G80745.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-15
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 14  DEEFVLLDLGDVSL-LNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGE 73
           ++E V++DL DVS  ++IP +AP+ LS LDT+NP+LTI  K+KLVGEY  TIGTCL F +
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 74  EEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKL 120
           +                      + +   +K ++P+A +HKILKF+L
Sbjct: 62  K---------------------GDNQTPQKKTVEPVAKLHKILKFRL 87

The following BLAST results are available for this feature:

BLAST of Sed0010430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885696.1	5.3e-44	76.56	uncharacterized protein LOC120075999 [Benincasa hispida]	[more]
XP_022993830.1	1.2e-43	73.48	uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharac...	[more]
XP_023550663.1	3.4e-43	71.85	uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022939121.1	1.3e-42	70.37	uncharacterized protein LOC111445121, partial [Cucurbita moschata]	[more]
XP_022133708.1	6.5e-42	74.24	uncharacterized protein LOC111006225 [Momordica charantia]	[more]

BLAST of Sed0010430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTZ1	5.7e-44	73.48	uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725...	[more]
A0A6J1FF13	6.3e-43	70.37	uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1BZW5	3.1e-42	74.24	uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S4DTV8	2.6e-41	74.80	general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0LML8	1.9e-39	71.88	TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680...	[more]

BLAST of Sed0010430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15420.1	2.4e-18	49.53	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	5.5e-15	42.06	Transcription factor TFIIIC, tau55-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019481	Transcription factor TFIIIC, triple barrel domain	PFAM	PF10419	TFIIIC_sub6	coord: 25..105 e-value: 1.2E-8 score: 34.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..90
IPR042771	TFIIIC subunit GTF3C6-like	PANTHER	PTHR21860	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED	coord: 23..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010430.1	Sed0010430.1	mRNA
Sed0010430.2	Sed0010430.2	mRNA
Sed0010430.3	Sed0010430.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000127	transcription factor TFIIIC complex