Sed0010424 (gene) Chayote v1

Overview


Name	Sed0010424
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Calcium-binding EF-hand family protein
Location	LG13: 22356004 .. 22356279 (-)
RNA-Seq Expression	Sed0010424
Synteny	Sed0010424

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACAAGGAACCCCAAGCTGTACCACCAGAGGGCCAAGCTATCTCGAGAGCAACTAAGCTTAATATTCCGAAACCACGACGGGGATGGCGATGGTCGCCTCAGCGCCACCGAGCTCACCGAAGCGTTTCAGTACATCGGCGCTCTTCTTCCGTTGTATAGAGCTCATCGTGCTCTTCGCTATGCTGATTCCGACAGAGATGGATTCATTGGCGAAAATGATTTCGAATTGCTCGTCAATTATGCCGAGAAACGGAAATACACCGTCGTTTGA

mRNA sequence

ATGACAACAAGGAACCCCAAGCTGTACCACCAGAGGGCCAAGCTATCTCGAGAGCAACTAAGCTTAATATTCCGAAACCACGACGGGGATGGCGATGGTCGCCTCAGCGCCACCGAGCTCACCGAAGCGTTTCAGTACATCGGCGCTCTTCTTCCGTTGTATAGAGCTCATCGTGCTCTTCGCTATGCTGATTCCGACAGAGATGGATTCATTGGCGAAAATGATTTCGAATTGCTCGTCAATTATGCCGAGAAACGGAAATACACCGTCGTTTGA

Coding sequence (CDS)

ATGACAACAAGGAACCCCAAGCTGTACCACCAGAGGGCCAAGCTATCTCGAGAGCAACTAAGCTTAATATTCCGAAACCACGACGGGGATGGCGATGGTCGCCTCAGCGCCACCGAGCTCACCGAAGCGTTTCAGTACATCGGCGCTCTTCTTCCGTTGTATAGAGCTCATCGTGCTCTTCGCTATGCTGATTCCGACAGAGATGGATTCATTGGCGAAAATGATTTCGAATTGCTCGTCAATTATGCCGAGAAACGGAAATACACCGTCGTTTGA

Protein sequence

MTTRNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGENDFELLVNYAEKRKYTVV

Homology

[Close]

BLAST of Sed0010424 vs. NCBI nr
Match: KAG6608481.1 (Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037808.1 putative calcium-binding protein CML41, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.7e-31
Identity = 70/88 (79.55%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 4  RNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYA 63
          R  K+   R KLSREQLS+IFRNHDGDGDGRLSATELTEAF+YIGA LP YRAH ALRY 
Sbjct: 3  RKNKMSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYT 62

Query: 64 DSDRDGFIGENDFELLVNYAEKRKYTVV 92
          DSDRDGFIGE DFE LVNY EKR YT+V
Sbjct: 63 DSDRDGFIGEKDFESLVNYTEKRHYTIV 90

[Close]

BLAST of Sed0010424 vs. NCBI nr
Match: KAG7024248.1 (Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 4  RNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYA 63
          R  K Y  R KLSREQLS+IFRNHDGDGDGRLS TELT AF+YIGA LP YRA  AL + 
Sbjct: 3  RKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHT 62

Query: 64 DSDRDGFIGENDFELLVNYAEKRKYTVV 92
          DSD DGFIGE DFELLVNYAEKRKYTV+
Sbjct: 63 DSDGDGFIGEKDFELLVNYAEKRKYTVI 90

[Close]

BLAST of Sed0010424 vs. NCBI nr
Match: KAA0064376.1 (putative calcium-binding protein CML27 [Cucumis melo var. makuwa] >TYK20211.1 putative calcium-binding protein CML27 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3  TRNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRY 62
          +R  K YH RA+LSREQL LIFRNHD D DGRLS TELTEAF+YIGA LP YRA  AL +
Sbjct: 2  SRRSKTYHPRARLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPPYRARHALFH 61

Query: 63 ADSDRDGFIGENDFELLVNYAEKRKYTVV 92
          ADSDRDGFI E DFELLVNYAE+R+YTV+
Sbjct: 62 ADSDRDGFISEKDFELLVNYAEQRQYTVI 90

[Close]

BLAST of Sed0010424 vs. NCBI nr
Match: KGN55185.1 (hypothetical protein Csa_012915 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 9.8e-29
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3  TRNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRY 62
          +R  K Y+ RAKLSREQL LIFRNHD D DGRLS TELTEAF+YIGA LP YRA  AL +
Sbjct: 2  SRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALLH 61

Query: 63 ADSDRDGFIGENDFELLVNYAEKRKYTVV 92
          ADSDRDGFIGE DFE LVNYAE+R+YT++
Sbjct: 62 ADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Sed0010424 vs. NCBI nr
Match: KAG6591370.1 (Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 67/86 (77.91%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 4  RNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYA 63
          R  K Y  R KLSREQLS+IFRNHDGDGDGRLS TELT AF+YIGA LP YRA  AL + 
Sbjct: 3  RKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHT 62

Query: 64 DSDRDGFIGENDFELLVNYAEKRKYT 90
          DSD DGFIGE DFELLVNYAEKRKYT
Sbjct: 63 DSDGDGFIGEKDFELLVNYAEKRKYT 88

[Close]

BLAST of Sed0010424 vs. ExPASy Swiss-Prot
Match: Q8L3R2 (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-06
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 16  SREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGEND 75
           S+E+L  +F + D DGDG++SA EL   F  +G  +    A  A+   D+D DG +G  D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 76  F 77
           F
Sbjct: 121 F 121

[Close]

BLAST of Sed0010424 vs. ExPASy Swiss-Prot
Match: Q0DJV6 (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.1e-06
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 19 QLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGENDF 77
          +L  +FR +D +GDG++SA EL    + +GA L      R +   DSDRDGF+  ++F
Sbjct: 5  ELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEF 62

[Close]

BLAST of Sed0010424 vs. ExPASy Swiss-Prot
Match: Q8RZB5 (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 GN=CML10 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-05
Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 13  AKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIG 72
           A    E++  +FR  D +GDGR+S +EL   F+ +G         R +  AD+D DGFI 
Sbjct: 34  APTPEEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFIS 93

Query: 73  ENDFELL 80
            ++F  L
Sbjct: 94  LDEFAAL 100

[Close]

BLAST of Sed0010424 vs. ExPASy Swiss-Prot
Match: Q9LE22 (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.8e-05
Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 18 EQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGENDFE 77
          E+L  +F   D +GDG++S  EL   F+ +G        +R L   D+DRDG+I  ++F 
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 78 LL 80
           L
Sbjct: 82 TL 83

[Close]

BLAST of Sed0010424 vs. ExPASy Swiss-Prot
Match: Q6L4D4 (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica OX=39947 GN=CML15 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 12  RAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFI 71
           R   + ++   +FR  D +GDGR+S  EL   F+ +G  +      R ++ ADSD DG+I
Sbjct: 48  RPPAAEDETERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYI 107

Query: 72  GENDF 77
              +F
Sbjct: 108 SLGEF 112

[Close]

BLAST of Sed0010424 vs. ExPASy TrEMBL
Match: A0A5A7VDB9 (Putative calcium-binding protein CML27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003480 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29
Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3  TRNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRY 62
          +R  K YH RA+LSREQL LIFRNHD D DGRLS TELTEAF+YIGA LP YRA  AL +
Sbjct: 2  SRRSKTYHPRARLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPPYRARHALFH 61

Query: 63 ADSDRDGFIGENDFELLVNYAEKRKYTVV 92
          ADSDRDGFI E DFELLVNYAE+R+YTV+
Sbjct: 62 ADSDRDGFISEKDFELLVNYAEQRQYTVI 90

[Close]

BLAST of Sed0010424 vs. ExPASy TrEMBL
Match: A0A0A0KZR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.7e-29
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3  TRNPKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRY 62
          +R  K Y+ RAKLSREQL LIFRNHD D DGRLS TELTEAF+YIGA LP YRA  AL +
Sbjct: 2  SRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALLH 61

Query: 63 ADSDRDGFIGENDFELLVNYAEKRKYTVV 92
          ADSDRDGFIGE DFE LVNYAE+R+YT++
Sbjct: 62 ADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Sed0010424 vs. ExPASy TrEMBL
Match: A0A6J1KUW2 (calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-15
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 14  KLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGE 73
           KLSR Q+  IF  HD DGDG LS +ELT+AF + G+++PLY+AH  L YAD+D DG I E
Sbjct: 84  KLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLISE 143

Query: 74  NDFELLVNYAEK 86
            + E LV+YAE+
Sbjct: 144 EELEKLVDYAER 155

[Close]

BLAST of Sed0010424 vs. ExPASy TrEMBL
Match: A0A6J1GK16 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454616 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-15
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 14  KLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGE 73
           KLSR Q+  IF  HD DGDG LS +ELT+AF + G+++PLY+AH  L YAD+D DG I E
Sbjct: 84  KLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLISE 143

Query: 74  NDFELLVNYAEK 86
            + E LV+YAE+
Sbjct: 144 EELEKLVDYAER 155

[Close]

BLAST of Sed0010424 vs. ExPASy TrEMBL
Match: A5AWP8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023174 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.1e-15
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 6  PKLYHQRAKLSREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADS 65
          PK    ++ L  +QL  IF+ HD +GDG+L+  EL +AFQ++GAL+P +RAHRAL +AD+
Sbjct: 6  PKTIPSKSPLPEQQLKKIFKQHDTNGDGQLNKAELKQAFQHLGALIPGWRAHRALHHADT 65

Query: 66 DRDGFIGENDFELLVNYAEKRKYTV 91
          D DG I E + + LV YA K  YT+
Sbjct: 66 DGDGCISEKEMKDLVEYAAKFGYTI 90

[Close]

BLAST of Sed0010424 vs. TAIR 10
Match: AT3G50770.1 (calmodulin-like 41 )

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 16  SREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGEND 75
           S+E+L  +F + D DGDG++SA EL   F  +G  +    A  A+   D+D DG +G  D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 76  F 77
           F
Sbjct: 121 F 121

[Close]

BLAST of Sed0010424 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06
Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 18 EQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGENDFE 77
          E+L  +F   D +GDG++S  EL   F+ +G        +R L   D+DRDG+I  ++F 
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 78 LL 80
           L
Sbjct: 82 TL 83

[Close]

BLAST of Sed0010424 vs. TAIR 10
Match: AT1G18210.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06
Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 18 EQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGENDFE 77
          E+L  +F   D +GDG++S  EL   F+ +G        +R L   D+DRDG+I  ++F 
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 78 LL 80
           L
Sbjct: 82 TL 83

[Close]

BLAST of Sed0010424 vs. TAIR 10
Match: AT1G76640.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 47.0 bits (110), Expect = 9.5e-06
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 20 LSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGENDFELL 79
          L  +F   D + DGR+SA EL ++F+ +G  +    A  A++ +D D DG +  N+F LL
Sbjct: 23 LEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALL 82

Query: 80 V 81
          +
Sbjct: 83 I 83

[Close]

BLAST of Sed0010424 vs. TAIR 10
Match: AT1G32250.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 24/68 (35.29%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 16  SREQLSLIFRNHDGDGDGRLSATELTEAFQYIGALLPLYRAHRALRYADSDRDGFIGEND 75
           + EQL  +FR  D DG+G ++A EL  +   +G  L +      ++ ADSD DG I   +
Sbjct: 92  TEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQE 151

Query: 76  FELLVNYA 84
           F   +N A
Sbjct: 152 FAKAINSA 159

The following BLAST results are available for this feature:

BLAST of Sed0010424 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608481.1	2.7e-31	79.55	Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037808.1...	[more]
KAG7024248.1	2.6e-29	77.27	Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0064376.1	4.4e-29	75.28	putative calcium-binding protein CML27 [Cucumis melo var. makuwa] >TYK20211.1 pu...	[more]
KGN55185.1	9.8e-29	74.16	hypothetical protein Csa_012915 [Cucumis sativus]	[more]
KAG6591370.1	1.3e-28	77.91	Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0010424 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3R2	5.4e-06	39.34	Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ...	[more]
Q0DJV6	7.1e-06	39.66	Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q8RZB5	6.0e-05	35.82	Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9LE22	7.8e-05	35.48	Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 ...	[more]
Q6L4D4	1.0e-04	33.85	Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Sed0010424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDB9	2.1e-29	75.28	Putative calcium-binding protein CML27 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KZR6	4.7e-29	74.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1	[more]
A0A6J1KUW2	3.9e-15	56.94	calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1	[more]
A0A6J1GK16	3.9e-15	56.94	calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454616 PE=4 SV=1	[more]
A5AWP8	5.1e-15	49.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023174 PE=4 SV=1	[more]

BLAST of Sed0010424 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50770.1	3.9e-07	39.34	calmodulin-like 41	[more]
AT1G18210.1	5.6e-06	35.48	Calcium-binding EF-hand family protein	[more]
AT1G18210.2	5.6e-06	35.48	Calcium-binding EF-hand family protein	[more]
AT1G76640.1	9.5e-06	36.07	Calcium-binding EF-hand family protein	[more]
AT1G32250.1	4.7e-05	35.29	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 24..42 e-value: 0.0061 score: 16.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 15..50 score: 12.086506
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 19..76 e-value: 3.7533E-8 score: 44.0757
None	No IPR available	GENE3D	1.10.238.10		coord: 2..87 e-value: 4.4E-11 score: 45.0
None	No IPR available	PANTHER	PTHR10891:SF911	SUBFAMILY NOT NAMED	coord: 14..85
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 14..85
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 28..40
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 64..76
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 13..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010424.1	Sed0010424.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding