Sed0010286 (gene) Chayote v1

Overview


Name	Sed0010286
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ankyrin repeat family protein
Location	LG10: 4007286 .. 4007522 (+)
RNA-Seq Expression	Sed0010286
Synteny	Sed0010286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGAAGCACCAAGCTGGGCTGACCAATGGGGAGCCGGAGGGATTGGAGCCATGGAAGAAGACAACGGCATTAAAGCCAAAGGAAACTGCAGCTCAGACAAGAAGGCTGGTTCTAAGCATGGATTTGCAAGAGCCAAGGCGGCGACGGTGGCGGGTGCCAAAAAGATTGGAACTCGGATATCTAATGGCATCAAATGGATCATGAACCCACGCAAGAAAAGCTCCAAGTAA

mRNA sequence

ATGGCTGCAGAAGCACCAAGCTGGGCTGACCAATGGGGAGCCGGAGGGATTGGAGCCATGGAAGAAGACAACGGCATTAAAGCCAAAGGAAACTGCAGCTCAGACAAGAAGGCTGGTTCTAAGCATGGATTTGCAAGAGCCAAGGCGGCGACGGTGGCGGGTGCCAAAAAGATTGGAACTCGGATATCTAATGGCATCAAATGGATCATGAACCCACGCAAGAAAAGCTCCAAGTAA

Coding sequence (CDS)

ATGGCTGCAGAAGCACCAAGCTGGGCTGACCAATGGGGAGCCGGAGGGATTGGAGCCATGGAAGAAGACAACGGCATTAAAGCCAAAGGAAACTGCAGCTCAGACAAGAAGGCTGGTTCTAAGCATGGATTTGCAAGAGCCAAGGCGGCGACGGTGGCGGGTGCCAAAAAGATTGGAACTCGGATATCTAATGGCATCAAATGGATCATGAACCCACGCAAGAAAAGCTCCAAGTAA

Protein sequence

MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGTRISNGIKWIMNPRKKSSK

Homology

[Close]

BLAST of Sed0010286 vs. NCBI nr
Match: KGN49108.1 (hypothetical protein Csa_002989 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 8.7e-26
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MAAEAPSWADQWGAGGIGAMEED+  KAKG  S+DKK GSK GFA+ KAATVAGAKKIG+
Sbjct: 1  MAAEAPSWADQWGAGGIGAMEEDDDSKAKGGRSTDKKGGSKPGFAKVKAATVAGAKKIGS 60

Query: 61 RISNGIKWIMNPRKKSSK 79
           ISNGIKWIMNPRKKSSK
Sbjct: 61 GISNGIKWIMNPRKKSSK 78

[Close]

BLAST of Sed0010286 vs. NCBI nr
Match: KAG6603780.1 (Ankyrin repeat domain-containing protein 13B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1   MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
           MAAEAPSWADQWGAGGIGAMEED+G KAKG   SDKK GSK G A+A AATVAGAKKIG+
Sbjct: 622 MAAEAPSWADQWGAGGIGAMEEDDGSKAKGGQGSDKKTGSKSGIAKAMAATVAGAKKIGS 681

Query: 61  RISNGIKWIMNPRKKSSK 79
            ISNGIKWIMNPRKKSSK
Sbjct: 682 GISNGIKWIMNPRKKSSK 699

[Close]

BLAST of Sed0010286 vs. NCBI nr
Match: KAG7033951.1 (Ankyrin repeat domain-containing protein 13B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1   MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
           MAAEAPSWADQWGAGGIGAMEED+G KAKG   SDKK GSK G A+A AATVAGAKKIG+
Sbjct: 599 MAAEAPSWADQWGAGGIGAMEEDDGSKAKGGQGSDKKTGSKSGIAKAMAATVAGAKKIGS 658

Query: 61  RISNGIKWIMNPRKKSSK 79
            ISNGIKWIMNPRKKSSK
Sbjct: 659 GISNGIKWIMNPRKKSSK 676

[Close]

BLAST of Sed0010286 vs. NCBI nr
Match: KAG7026631.1 (hypothetical protein SDJN02_10634, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-25
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MAAEAPSWADQWGAGGIGA+EED+G KAKG   SDKKA SK GFA+AKAATVAGAKKIG+
Sbjct: 1  MAAEAPSWADQWGAGGIGAIEEDDGSKAKGEHISDKKARSKPGFAKAKAATVAGAKKIGS 60

Query: 61 RISNGIKWIMNPRKKSS 78
           ISNGIKWIMNPRKK+S
Sbjct: 61 GISNGIKWIMNPRKKNS 77

[Close]

BLAST of Sed0010286 vs. NCBI nr
Match: TYK13043.1 (Ankyrin repeat family protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 7.3e-25
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MAAEAPSWADQWGAGGIGAMEED+  KAKG  S+DKK+GSK GFA+AKAAT+AGAKKIG+
Sbjct: 1  MAAEAPSWADQWGAGGIGAMEEDDS-KAKGGRSTDKKSGSKPGFAKAKAATLAGAKKIGS 60

Query: 61 RISNGIKWIMNPRKKSSK 79
           ISNGIKWIMNPRKKSSK
Sbjct: 61 GISNGIKWIMNPRKKSSK 77

[Close]

BLAST of Sed0010286 vs. ExPASy TrEMBL
Match: A0A0A0KHT9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513720 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-26
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MAAEAPSWADQWGAGGIGAMEED+  KAKG  S+DKK GSK GFA+ KAATVAGAKKIG+
Sbjct: 1  MAAEAPSWADQWGAGGIGAMEEDDDSKAKGGRSTDKKGGSKPGFAKVKAATVAGAKKIGS 60

Query: 61 RISNGIKWIMNPRKKSSK 79
           ISNGIKWIMNPRKKSSK
Sbjct: 61 GISNGIKWIMNPRKKSSK 78

[Close]

BLAST of Sed0010286 vs. ExPASy TrEMBL
Match: A0A5D3CM93 (Ankyrin repeat family protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006450 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-25
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MAAEAPSWADQWGAGGIGAMEED+  KAKG  S+DKK+GSK GFA+AKAAT+AGAKKIG+
Sbjct: 1  MAAEAPSWADQWGAGGIGAMEEDDS-KAKGGRSTDKKSGSKPGFAKAKAATLAGAKKIGS 60

Query: 61 RISNGIKWIMNPRKKSSK 79
           ISNGIKWIMNPRKKSSK
Sbjct: 61 GISNGIKWIMNPRKKSSK 77

[Close]

BLAST of Sed0010286 vs. ExPASy TrEMBL
Match: A0A4S4DD10 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_005506 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.8e-14
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
           MA EAPSWADQWGAGGIGAME ++  KA G+  SDKK GS  G  +AKA  +AGA+K+ +
Sbjct: 144 MATEAPSWADQWGAGGIGAMEGEDNKKANGDKGSDKKTGSSAGLGKAKAVAMAGAQKVKS 203

Query: 61  RISNGIKWIMNPRKK 76
              NGIKWI N  +K
Sbjct: 204 GTCNGIKWIKNQCQK 218

[Close]

BLAST of Sed0010286 vs. ExPASy TrEMBL
Match: M5WYJ4 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G019700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.2e-14
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MA EAP WADQWGAGGIGA+E+ +  KA  N S++KKA +K G  +AK A +AGA+KI  
Sbjct: 1  MATEAPGWADQWGAGGIGALEDGDNTKATENSSNNKKADTKSGLGKAKVAAMAGAEKIKN 60

Query: 61 RISNGIKWIMN--PRKKSSK 79
            SNGIKWI N   +KK SK
Sbjct: 61 GTSNGIKWIKNQCQKKKPSK 80

[Close]

BLAST of Sed0010286 vs. ExPASy TrEMBL
Match: A0A6P5T3Q0 (uncharacterized protein LOC110763130 OS=Prunus avium OX=42229 GN=LOC110763130 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.2e-14
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MA EAP WADQWGAGGIGA+E+ +  KA  N S++KKA +K G  +AK A +AGA+KI  
Sbjct: 11 MATEAPGWADQWGAGGIGALEDGDNTKATENSSNNKKADTKSGLGKAKVAAMAGAEKIKN 70

Query: 61 RISNGIKWIMN--PRKKSSK 79
            SNGIKWI N   +KK SK
Sbjct: 71 GTSNGIKWIKNQCQKKKPSK 90

[Close]

BLAST of Sed0010286 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 1   MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
           MA+EAPSWADQWG GGIG M  +     K + +  K   +K G  +AK     G      
Sbjct: 573 MASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGKTKAGINKAKIVVFIGV----- 632

Query: 61  RISNGIKWIMNPRKKSS 78
              N +K ++  +KK S
Sbjct: 633 ---NWMKNLVQRKKKDS 641

[Close]

BLAST of Sed0010286 vs. TAIR 10
Match: AT1G62045.1 (BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-05
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1  MAAEAPSWADQWGAGGIGAMEEDNGIKAKGNCSSDKKAGSKHGFARAKAATVAGAKKIGT 60
          MA+EAPSWADQWG GGIG M E++  K+K      K AG K+   + K+A      KI  
Sbjct: 1  MASEAPSWADQWGTGGIGEMPEEDNTKSK------KDAGGKNS-GQTKSA------KIVD 60

Query: 61 RISNGIKWIMNPRKKSSK 79
           +S   KW+ N   K  K
Sbjct: 61 FVS--FKWMKNLVHKKKK 63

The following BLAST results are available for this feature:

BLAST of Sed0010286 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49108.1	8.7e-26	84.62	hypothetical protein Csa_002989 [Cucumis sativus]	[more]
KAG6603780.1	1.1e-25	84.62	Ankyrin repeat domain-containing protein 13B, partial [Cucurbita argyrosperma su...	[more]
KAG7033951.1	1.1e-25	84.62	Ankyrin repeat domain-containing protein 13B, partial [Cucurbita argyrosperma su...	[more]
KAG7026631.1	5.6e-25	84.42	hypothetical protein SDJN02_10634, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK13043.1	7.3e-25	84.62	Ankyrin repeat family protein, putative isoform 1 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0010286 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHT9	4.2e-26	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513720 PE=4 SV=1	[more]
A0A5D3CM93	3.6e-25	84.62	Ankyrin repeat family protein, putative isoform 1 OS=Cucumis melo var. makuwa OX...	[more]
A0A4S4DD10	4.8e-14	60.00	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0055...	[more]
M5WYJ4	8.2e-14	58.75	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G019700 PE=4 SV=1	[more]
A0A6P5T3Q0	8.2e-14	58.75	uncharacterized protein LOC110763130 OS=Prunus avium OX=42229 GN=LOC110763130 PE...	[more]

BLAST of Sed0010286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11740.1	1.4e-05	37.66	ankyrin repeat family protein	[more]
AT1G62045.1	4.0e-05	43.59	BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33386:SF26	REPEAT PROTEIN, PUTATIVE-RELATED	coord: 1..76
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010286.1	Sed0010286.1	mRNA