Sed0010281 (gene) Chayote v1

Overview


Name	Sed0010281
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG01: 64845206 .. 64850233 (-)
RNA-Seq Expression	Sed0010281
Synteny	Sed0010281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTTTGTTTCAATTTCCTTCTCACAAATTGGACAACAAATATTAATATCCACCCCTCTCTTATAAATATTGCACTTAGTCGGAATGGCATTAGCAATAACGCTCCACGCCCCCACTTGGATTTTGGGAGAGATGTCAACTTTCCAGAACCTTTTCCAAATCATAGAGGTAGCTTTAGAATCAGACTGAGAAGCCTCATTTTTATTCTCCCAATTAAAACCGACATGATAGGCACTTTTAACTGAAAAAACACCTTTAGCATTAGCATTCCAGATTACCTCATCACTAGACTCAAACTCACTCAACGGAATATTGAAAATTAAATTAGCGTCTTCTTTGCAAAAAATATCCTCGATAAGCTCCACATTCCAAGAGTTATTATTTAAAATTAATTCAGCCACACATTTATCCTTCCAATCACCCCTAACCCCATCGGCATAAGGGTTTCCGACTCTATTCAACCAAGGGTCCCTACCTATCGTTATCCTTCTCCCATTCCCCACCTTCCATCTATAACCTTTACGGAACAAATCCCTACCCCACAAGATACTTCTCCAAGCAAAAGAAGGAGCATTACCAAGAGGGGCTGATAAAAAATCACCATTGGAAAAATACTTCCCCCTAAGCACTCTACTCAACAAGCTATTAGGGTATCTGAGAATTCTCCAGCTATGCTTAGCTAACAAAGCTTGATTAAAAAGATTTAGATTTTTAAAACCGAGCTCCCCAAACTCCTTACTTTTCCCCATCTTATGCCAACTCATCCAATGCATTTTCATATTATTAAACTCCTCCCCCCACCAAAACTTAGCATACAATTTTTGAAGGTCCTCATTAAAAGACTTAGACAGCCGAAAACAACTCATAGTATAAGTGGGAATCGCCTGACCTACTACCTTAATCATGACTTCCTTCCCCCCTCTCGACAACAATTTACCTTTCCAAGTTTGGAGACTGTTGACTGAGAAATTTCGGTCAATTACAAGCTGCCACGTCGTTATCTCAAATTTAATGGCGAAATTAAATTAAATTTTGGGACAATATTTCTCAAAATTAATTTAAATAAATAAATTGGTTTATCTTGAATTTGGCCAAAACCAAACCAAACCAAGTAAACCGAACCATGAATTTCAAGCCCAAAAGGCCAAGCCCATGGGTCAGGCCCAAAGGCCCATTAGGGCCCAAGCCCACGATGCATGAGAACTCTATAAATAGAGGAGTTCTCTTCATTTCAAGGGGTGGAAAATTTTTGGAACTAGAGAGGGAATTCACATTTGTTGAGGTCTCTCCACGGTTCTAAAGATCAAACGCCGTTTCGAAGGCTAAAATTACTTCGAAAGACAAATAGTTCCATAAACGAGCAGTTGTATACGAAGAACACATATTTTGTTCTTCAAATTGCTCTTCATACCAAGAACATCCATTCAGAGAGAACGAATCAGAGGATCAAGCATAGAGATCGAACCACTTTCGCACAAACTCATCTCAAGTTCAAGTTCAACTCCACGAAACCAAATTTCTCCGGAAATCTCGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCAATCTCTCACACAAATCAAGCCACCATGTCTGGAAAAGCCACATCAAAGACCGCTGCTCCAGAAGGCATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGAAACTACACTGGACCTATCACGCGTAGTCGTTCCAAGTCCGTCGAGAGCAATGAACCTCAAGTAACACCAAATGCGATCGCAAAAAGAATCGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTAAAAAATAACCCATTGTTCGACCAAGTCAGTCCTACCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTAATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAGAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCTTGAGGCACAACCACAACTGCACTCAGCCTCAGTCGCTTCCTTGTCTGTTCAACAGCTACATGACCTGATCACGAACACTATTAGAGCTCAAGGTGGTGGGCTAGTTCAAAGTTCTCTTTTGTACTCCAAGCCATACACAAAGAGAATAGACAACTTAAGGATGCCTGCAGGATACCAACCGCCTAAGTTTCAATTTGATGGAAAAGGCAACCCCAAACAGCATGTTGCTCATTTCGTAGAGACTTGTGAAACCGCTGGAACTCGAGGAGACCTTCTCGTCAGGCAGTTTGTCCGAACGTTAAAGGGGAATGCGTTTGACTGGTATACTGATCTTGAAGCTGAAACGATAGATAGCTGGGAAGAGTTGGAGAGAGAGTTCCTTAATCGGTTCTATAGCACGAGACGGACTGTCAGCATGATAGAATTAACAAATGCGAAGCAGCGGAAGGCGAGCTCGTAAATCGACTATATTAACCGTTGGCGAGCTCTAAGTCCGGATCGCAAAGACCGCCTCATCAAAACGTCCGCGATCGACATACGTATCCGGGGCATGCATTGGGGACTTCTATACATCCTGAAGGGAATCAAGCCTCGCACTTTTGAGGAGCCGCCACCCGAGCTCATGATATGGAGTGAGCATTGACGCAAAGGGAAACAAAGATTCGCTGGTCTTAGAAACCCGTAAGGAAAAGAAGGATTTCAAGCCCACAGAAAAAGTTACAAAAAATGTGGCAAATGAGTCAATGACCATCGATGCAGCTCCATTAAAGTTTGCCTCAAAAGCAAAGGGAACAAAAGCTGAGAAACGACCAGTTGTGGAGCAACGACGTCGCCTAACGCTTCAGGAAAGACAAGAAAAAGTCTATCCATTTCCGGACTCCGATGTAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGGTAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCCATCGAGAAATGCTTCGTCCTGAAAGAGTTGATTCTGAGGTTGGCTAGAGAAAAAAAGATTGAGCTGGACTTAGAAGAAATAGCTCAAGCAAATCATGCCGCTGTGGTCCCTCAGTCTAAAGTACAACCACCAAATGGTGCAACACCGCGTTGGTCTCAATGCCTTGTTCAATTTGGTTCCTTTGAGCCAGTTGTTGTTCAATGTCAAAATCGCAGCTTTCAAAGGGAAAATATTCAACAAGCTTCCATTCAAGAAAGATGTGTTTTAGAGCCAACCGTAGATGAGAATGAAGGTTGGACTGTTGTAACCCGTCGCAGGAAGCAAAAACAAACGTATGCTCAGAAAGAATCACGCTTATTTCAAGAGTCAAAGAGGAAGAGATTGCCTAAGAAACGAGGCAAAAGATGTGTAAGGAAATCTAAGCCCGTCATAGAGGAGAACGAAGATTTTCTACGAGCACGTCATGCTATAATGTTGGCTGATTTCATCCCGAAGGAATTTTTACGTGAAGGAAAAAATGAAGTGATAGACACTGCTACATGTCATGCAATTTGCGCAAGTGATGACTCAGCGAGCTCTTCAAAAGCTGTCATTGAGCCTAAAGCTACGCTCTCTTTCAACATTGAAGATTTGATATCACTTCCTCAAATAGATAAAAACTCTCTGATTGAGGCATTATTAGACTCAAGTAACGAGGACGTTAAAATACCGCAAATCTGGGGCTGCACGGTTCGACATGCATGTCCATAAGTTTCACGGACGATGATCTGTTGTTGGGATCAAAACCTCACAACCGCCCTTTGTATGTCTCAGGCTATATACGAGAGCAAAGAGTTGGACGAATCCTCATTGATAATGGGTCGGCTGTCAACATAATGCCAAAGGTAACCTTGAAGCAATTAGGCATCTCCATGGAAGAGCTTTCAGACAGCAAGTTATTAATCCAAGGCTTCAACCAAGGCGGACAACGGGCGATTGGCATGATACGGCTTGAGGTCATCATTGGCGAGCTCAGTGCAGATGCTTTGTTCCATGTTATAGATTGTAGGACAACATATCGACTACTATTGGGACGACCCTGGATTCATGAAAATCGAGTTGTTACCTCCTCGTTGCATCAATGCTTTAAGTTTTACCAAGACGGGGTTAAGAAAGTAGAAGCTGACACAAATCCGTTCTTAGAGGTTTCCAGTCTCATTTTGCCGATGCAAAATTCTATGCAAAAACGAGATCATGGAGAAAATAGTGCCACATGAGGTCCCTGCGATAAAAGAGAGTGAAAAAGCTAAGCTAAAACCAGAGGCCGACATAAAGAAATGGGTAGAAAAGTCATGCCCAGTAAAGATTGAGGCTTCAACGAGTCTAGTAGCTCCTAAGGCTCCAAAAGATGAGAAACTTCCAACTTCACCCATCTTACGCTATGTCCCTATATCCCGCCGAAAAAAGGGTGAAGCGCCTTTCACCGAATGTTCTAAAAAATTGAAAGTAGGTGATATTGAAGTATTGAGGGAAAGTTTCACCACTCCTTTGACAAAGATGAAAAAGCAATGGAGTCAGAGGAGCGAAGAAGATGAGAAGAATGTGGTTTTGCCTGAGAAGCGGACAAAGGATGGATTTGACCCCAATGCGTACAGACTGCTAGCTAAAGCAGGGTATGATTTCACGACACATACCGAGTTCAAACGCTTAAGTATATTTGATGACCAAGCCAAGCTTTCTTCGACGCAAAAGAAGCTGTTGAAGAAAGGTTACGCTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCACCTGAACCAGTCCGCATAACAAGAAGAGAGAAGACAAAGGTGGAAGATGCCAACCACATAACCATTGAAGAGGTTGAAGAATCGAAGGAAAATAAGAATGTTGGTCATAGGGTACCCGCCTTTTAA

mRNA sequence

ATGCATGTTTGTTTCAATTTCCTTCTCACAAATTGGACAACAAATATTAATATCCACCCCTCTCTTATAAATATTGCACTTAGTCGGAATGGCATTAGCAATAACGCTCCACAAGGAGCATTACCAAGAGGGGCTGATAAAAAATCACCATTGGAAAAATACTTCCCCCTAAGCACTCTACTCAACAAGCTATTAGGAATCGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTAAAAAATAACCCATTGTTCGACCAAGTCAGTCCTACCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTAATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAGAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGATACAACCACCAAATGGTGCAACACCGCGTTGGTCTCAATGCCTTGTTCAATTTGGTTCCTTTGAGCCAGTTGTTGTTCAATGTCAAAATCGCAGCTTTCAAAGGGAAAATATTCAACAAGCTTCCATTCAAGAAAGATGTGTTTTAGAGCCAACCGTAGATGAGAATGAAGGTTGGACTGTTGTAACCCGTCGCAGGAAGCAAAAACAAACGTATGCTCAGAAAGAATCACGCTTATTTCAAGAGTCAAAGAGGAAGAGATTGCCTAAGAAACGAGGCAAAAGATGTGTAAGGAAATCTAAGCCCGTCATAGAGGAGAACGAAGATTTTCTACGAGCACGTCATGCTATAATGTTGGCTGATTTCATCCCGAAGGAATTTTTACGTGAAGGAAAAAATGAAGTGATAGACACTGCTACATGTCATGCAATTTGCGCAAGTGATGACTCAGCGAGCTCTTCAAAAGCTCTAAAACCAGAGGCCGACATAAAGAAATGGGTAGAAAAGTCATGCCCAGTAAAGATTGAGGCTTCAACGAGTCTAGTAGCTCCTAAGGCTCCAAAAGATGAGAAACTTCCAACTTCACCCATCTTACGCTATGTCCCTATATCCCGCCGAAAAAAGGGTGAAGCGCCTTTCACCGAATGTTCTAAAAAATTGAAAGTAGGTGATATTGAAGTATTGAGGGAAAGTTTCACCACTCCTTTGACAAAGATGAAAAAGCAATGGAGTCAGAGGAGCGAAGAAGATGAGAAGAATGTGGTTTTGCCTGAGAAGCGGACAAAGGATGGATTTGACCCCAATGCGTACAGACTGCTAGCTAAAGCAGGGTATGATTTCACGACACATACCGAGTTCAAACGCTTAAGTATATTTGATGACCAAGCCAAGCTTTCTTCGACGCAAAAGAAGCTGTTGAAGAAAGGTTACGCTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCACCTGAACCAGTCCGCATAACAAGAAGAGAGAAGACAAAGGTGGAAGATGCCAACCACATAACCATTGAAGAGGTTGAAGAATCGAAGGAAAATAAGAATGTTGGTCATAGGGTACCCGCCTTTTAA

Coding sequence (CDS)

ATGCATGTTTGTTTCAATTTCCTTCTCACAAATTGGACAACAAATATTAATATCCACCCCTCTCTTATAAATATTGCACTTAGTCGGAATGGCATTAGCAATAACGCTCCACAAGGAGCATTACCAAGAGGGGCTGATAAAAAATCACCATTGGAAAAATACTTCCCCCTAAGCACTCTACTCAACAAGCTATTAGGAATCGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTAAAAAATAACCCATTGTTCGACCAAGTCAGTCCTACCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTAATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAGAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGATACAACCACCAAATGGTGCAACACCGCGTTGGTCTCAATGCCTTGTTCAATTTGGTTCCTTTGAGCCAGTTGTTGTTCAATGTCAAAATCGCAGCTTTCAAAGGGAAAATATTCAACAAGCTTCCATTCAAGAAAGATGTGTTTTAGAGCCAACCGTAGATGAGAATGAAGGTTGGACTGTTGTAACCCGTCGCAGGAAGCAAAAACAAACGTATGCTCAGAAAGAATCACGCTTATTTCAAGAGTCAAAGAGGAAGAGATTGCCTAAGAAACGAGGCAAAAGATGTGTAAGGAAATCTAAGCCCGTCATAGAGGAGAACGAAGATTTTCTACGAGCACGTCATGCTATAATGTTGGCTGATTTCATCCCGAAGGAATTTTTACGTGAAGGAAAAAATGAAGTGATAGACACTGCTACATGTCATGCAATTTGCGCAAGTGATGACTCAGCGAGCTCTTCAAAAGCTCTAAAACCAGAGGCCGACATAAAGAAATGGGTAGAAAAGTCATGCCCAGTAAAGATTGAGGCTTCAACGAGTCTAGTAGCTCCTAAGGCTCCAAAAGATGAGAAACTTCCAACTTCACCCATCTTACGCTATGTCCCTATATCCCGCCGAAAAAAGGGTGAAGCGCCTTTCACCGAATGTTCTAAAAAATTGAAAGTAGGTGATATTGAAGTATTGAGGGAAAGTTTCACCACTCCTTTGACAAAGATGAAAAAGCAATGGAGTCAGAGGAGCGAAGAAGATGAGAAGAATGTGGTTTTGCCTGAGAAGCGGACAAAGGATGGATTTGACCCCAATGCGTACAGACTGCTAGCTAAAGCAGGGTATGATTTCACGACACATACCGAGTTCAAACGCTTAAGTATATTTGATGACCAAGCCAAGCTTTCTTCGACGCAAAAGAAGCTGTTGAAGAAAGGTTACGCTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCACCTGAACCAGTCCGCATAACAAGAAGAGAGAAGACAAAGGTGGAAGATGCCAACCACATAACCATTGAAGAGGTTGAAGAATCGAAGGAAAATAAGAATGTTGGTCATAGGGTACCCGCCTTTTAA

Protein sequence

MHVCFNFLLTNWTTNINIHPSLINIALSRNGISNNAPQGALPRGADKKSPLEKYFPLSTLLNKLLGIAGLLEGTSDEIVVKNNPLFDQVSPTVDQPKETSNPDVMSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQIQPPNGATPRWSQCLVQFGSFEPVVVQCQNRSFQRENIQQASIQERCVLEPTVDENEGWTVVTRRRKQKQTYAQKESRLFQESKRKRLPKKRGKRCVRKSKPVIEENEDFLRARHAIMLADFIPKEFLREGKNEVIDTATCHAICASDDSASSSKALKPEADIKKWVEKSCPVKIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKENKNVGHRVPAF

Homology

[Close]

BLAST of Sed0010281 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 2.4e-55
Identity = 164/424 (38.68%), Postives = 218/424 (51.42%), Query Frame = 0


Query: 210 DENEGWTVVTRRRKQKQTYAQKESRLFQESKR-KRLPKKRGKRCVRKSKPVIEENEDFLR 269
           +++EGWTVVTRR+K+K T  QKESRL+   +R  +  K + K+  RK K V E+++DF R
Sbjct: 476 EDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVHEKDKDFPR 535

Query: 270 ARHAIMLADFIPKEFLREGKNE---VIDTAT--------------CHAICASDDSA---- 329
            +  + LADF P  FL + ++E   V+ +A+              C +I  SD+      
Sbjct: 536 TQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFSDEDLLLGS 595

Query: 330 -------------------------SSSKALKPEADIKKW-------------------- 389
                                     S+  + P++ +++                     
Sbjct: 596 KLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKLVIQGFNQG 655

Query: 390 -------------------VEKSCPV---------------------------KIEASTS 449
                              V    P+                           K EASTS
Sbjct: 656 SQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHSGKSEASTS 715

Query: 450 LVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMK 509
                   DEK    PILRYVP+SRRKKGE+PF E  + LKVGDIEVL+ESFTTPLTK+ 
Sbjct: 716 TAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESFTTPLTKIT 775

Query: 510 KQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSS 521
           K   Q  + D     LP++RTKDGFDP AY+ +AKAGYDFTTHTEFK L I  +Q KLSS
Sbjct: 776 K---QEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKI-HEQPKLSS 835

[Close]

BLAST of Sed0010281 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-11
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 26  ALSRNGISNNAPQGALPRGADKKSPLEKYFPLSTLLNKLLGIAGLLEGTSDEIVVKNNPL 85
           A S + +++NA  G + R   K    E+    S +   +L    L+E     IV+K NPL
Sbjct: 6   AASNSSVASNAYTGPITRSRSKGITQEQ-DQGSNVAQSIL--KQLMESLKAGIVIKENPL 65

Query: 86  FDQVSPTVDQPKETSNPDVMSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQ 145
           +D    +  + K+ ++PDVMSVMMA    +  MAE ERK+  +MK +EERD EI  L+ Q
Sbjct: 66  YDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQ 125

Query: 146 MQNRETAESSQ 157
           M+ RETAESSQ
Sbjct: 126 MRTRETAESSQ 133

HSP 2 Score: 216.5 bits (550), Expect = 5.5e-52
Identity = 116/191 (60.73%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 330 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFT 389
           K EAST+        DEK    PILRYVP+SRRKKGE+PF E  + LKVG+IEVL+ESFT
Sbjct: 311 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKVGEIEVLKESFT 370

Query: 390 TPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFD 449
           TPLTK+ K   Q  + D     LP++RTKDGFDP AY+L+AKAGYDFTTHTEFK L I+ 
Sbjct: 371 TPLTKITK---QEIKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIY- 430

Query: 450 DQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKE 509
           +Q KLSSTQKKLL++G+ +P SRKGLGYKSPEP+RITR+ K KV D+NHIT++E +  +E
Sbjct: 431 EQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKEADSMEE 490

Query: 510 NKNVGHRVPAF 521
            +    R  AF
Sbjct: 491 KEGDSQRTSAF 497

[Close]

BLAST of Sed0010281 vs. NCBI nr
Match: KAA0054152.1 (uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 9.5e-52
Identity = 117/191 (61.26%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 330 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFT 389
           K E STS        DEK    PILRYVP+SRRKKGE+PF E  + LKVGDIEVL+ESFT
Sbjct: 158 KSEVSTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKVGDIEVLKESFT 217

Query: 390 TPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFD 449
           TPLTK+ K   +  + D     LP++RTKDGFDP AY+L+AKAGYDF THTEFK L I  
Sbjct: 218 TPLTKINK---KEIKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFITHTEFKILKI-H 277

Query: 450 DQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKE 509
           +Q KLSSTQKKLL++G+A+P SRKGLGYKSPEP+RITR+ K KV D+NHIT++EV+  +E
Sbjct: 278 EQPKLSSTQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE 337

Query: 510 NKNVGHRVPAF 521
            ++   R  AF
Sbjct: 338 KEDDSQRTSAF 344

[Close]

BLAST of Sed0010281 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-51
Identity = 179/536 (33.40%), Postives = 237/536 (44.22%), Query Frame = 0


Query: 171 LVQFGSFEPVVVQCQNRSFQRENIQQASIQERCVLEPTVDENEGWTVVTRRRKQKQTYAQ 230
           L +FG+FEPVVV+     F +E   + S ++  ++E   +++E WT+VTRR+K+K T  Q
Sbjct: 341 LEEFGTFEPVVVR-----FHQEVAPEDSQEKERLIE---EDDERWTIVTRRKKRKSTPIQ 400

Query: 231 KESRLFQESKR-KRLPKKRGKRCVRKSKPVIEENEDFLRARHAIMLADFIPKEFLREGKN 290
           KE R ++  +R  +  K + K+  RK K + +E++DF R +  I LADF P  FL + ++
Sbjct: 401 KEHRFYRNYRRWNKAQKNKKKKKTRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQD 460

Query: 291 EVIDTATCHAICASDD-------------------------------------------S 350
           E      CHAI A+++                                           +
Sbjct: 461 ENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSA 520

Query: 351 ASSSKA------------------------------------------------------ 410
           ASSS A                                                      
Sbjct: 521 ASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAV 580

Query: 411 ---------------------------------------LKPEAD--------------- 470
                                                   K EAD               
Sbjct: 581 NIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAK 640

Query: 471 --------------------------IKKWVEKSCPVKI--------EASTSLVAPKAPK 521
                                     +K    K   + I        EASTS        
Sbjct: 641 FYLKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHISIGTFHSEKSEASTSTAKSVILM 700

[Close]

BLAST of Sed0010281 vs. NCBI nr
Match: KAA0062018.1 (uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 4.0e-50
Identity = 115/191 (60.21%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 330 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFT 389
           K EASTS        DEK    PIL YVP+SRRKKGE+PF E S+ LKVGDIEVL+ESFT
Sbjct: 236 KSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQGLKVGDIEVLKESFT 295

Query: 390 TPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFD 449
           TPLTK+ K   Q  + D     LP++RTKD FDP AY+L+AKAGYDFTTHTEFK L I  
Sbjct: 296 TPLTKITK---QEIKIDLTEASLPKRRTKDEFDPKAYKLMAKAGYDFTTHTEFKSLKI-H 355

Query: 450 DQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKE 509
           +Q K+SSTQKKLL++G+A+P SRKGLGYK PEP+RITR+ K K+ D+NHI ++EV+  +E
Sbjct: 356 EQPKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHIIVKEVDSMEE 415

Query: 510 NKNVGHRVPAF 521
            +    R  AF
Sbjct: 416 KEGDSQRTSAF 422

[Close]

BLAST of Sed0010281 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-55
Identity = 164/424 (38.68%), Postives = 218/424 (51.42%), Query Frame = 0


Query: 210 DENEGWTVVTRRRKQKQTYAQKESRLFQESKR-KRLPKKRGKRCVRKSKPVIEENEDFLR 269
           +++EGWTVVTRR+K+K T  QKESRL+   +R  +  K + K+  RK K V E+++DF R
Sbjct: 476 EDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVHEKDKDFPR 535

Query: 270 ARHAIMLADFIPKEFLREGKNE---VIDTAT--------------CHAICASDDSA---- 329
            +  + LADF P  FL + ++E   V+ +A+              C +I  SD+      
Sbjct: 536 TQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFSDEDLLLGS 595

Query: 330 -------------------------SSSKALKPEADIKKW-------------------- 389
                                     S+  + P++ +++                     
Sbjct: 596 KLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKLVIQGFNQG 655

Query: 390 -------------------VEKSCPV---------------------------KIEASTS 449
                              V    P+                           K EASTS
Sbjct: 656 SQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHSGKSEASTS 715

Query: 450 LVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMK 509
                   DEK    PILRYVP+SRRKKGE+PF E  + LKVGDIEVL+ESFTTPLTK+ 
Sbjct: 716 TAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESFTTPLTKIT 775

Query: 510 KQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSS 521
           K   Q  + D     LP++RTKDGFDP AY+ +AKAGYDFTTHTEFK L I  +Q KLSS
Sbjct: 776 K---QEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKI-HEQPKLSS 835

[Close]

BLAST of Sed0010281 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-11
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 26  ALSRNGISNNAPQGALPRGADKKSPLEKYFPLSTLLNKLLGIAGLLEGTSDEIVVKNNPL 85
           A S + +++NA  G + R   K    E+    S +   +L    L+E     IV+K NPL
Sbjct: 6   AASNSSVASNAYTGPITRSRSKGITQEQ-DQGSNVAQSIL--KQLMESLKAGIVIKENPL 65

Query: 86  FDQVSPTVDQPKETSNPDVMSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQ 145
           +D    +  + K+ ++PDVMSVMMA    +  MAE ERK+  +MK +EERD EI  L+ Q
Sbjct: 66  YDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQ 125

Query: 146 MQNRETAESSQ 157
           M+ RETAESSQ
Sbjct: 126 MRTRETAESSQ 133

HSP 2 Score: 216.5 bits (550), Expect = 2.7e-52
Identity = 116/191 (60.73%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 330 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFT 389
           K EAST+        DEK    PILRYVP+SRRKKGE+PF E  + LKVG+IEVL+ESFT
Sbjct: 311 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKVGEIEVLKESFT 370

Query: 390 TPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFD 449
           TPLTK+ K   Q  + D     LP++RTKDGFDP AY+L+AKAGYDFTTHTEFK L I+ 
Sbjct: 371 TPLTKITK---QEIKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIY- 430

Query: 450 DQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKE 509
           +Q KLSSTQKKLL++G+ +P SRKGLGYKSPEP+RITR+ K KV D+NHIT++E +  +E
Sbjct: 431 EQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKEADSMEE 490

Query: 510 NKNVGHRVPAF 521
            +    R  AF
Sbjct: 491 KEGDSQRTSAF 497

[Close]

BLAST of Sed0010281 vs. ExPASy TrEMBL
Match: A0A5A7UEC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00760 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.6e-52
Identity = 117/191 (61.26%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 330 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFT 389
           K E STS        DEK    PILRYVP+SRRKKGE+PF E  + LKVGDIEVL+ESFT
Sbjct: 158 KSEVSTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKVGDIEVLKESFT 217

Query: 390 TPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFD 449
           TPLTK+ K   +  + D     LP++RTKDGFDP AY+L+AKAGYDF THTEFK L I  
Sbjct: 218 TPLTKINK---KEIKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFITHTEFKILKI-H 277

Query: 450 DQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKE 509
           +Q KLSSTQKKLL++G+A+P SRKGLGYKSPEP+RITR+ K KV D+NHIT++EV+  +E
Sbjct: 278 EQPKLSSTQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE 337

Query: 510 NKNVGHRVPAF 521
            ++   R  AF
Sbjct: 338 KEDDSQRTSAF 344

[Close]

BLAST of Sed0010281 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.0e-52
Identity = 179/536 (33.40%), Postives = 237/536 (44.22%), Query Frame = 0


Query: 171 LVQFGSFEPVVVQCQNRSFQRENIQQASIQERCVLEPTVDENEGWTVVTRRRKQKQTYAQ 230
           L +FG+FEPVVV+     F +E   + S ++  ++E   +++E WT+VTRR+K+K T  Q
Sbjct: 341 LEEFGTFEPVVVR-----FHQEVAPEDSQEKERLIE---EDDERWTIVTRRKKRKSTPIQ 400

Query: 231 KESRLFQESKR-KRLPKKRGKRCVRKSKPVIEENEDFLRARHAIMLADFIPKEFLREGKN 290
           KE R ++  +R  +  K + K+  RK K + +E++DF R +  I LADF P  FL + ++
Sbjct: 401 KEHRFYRNYRRWNKAQKNKKKKKTRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQD 460

Query: 291 EVIDTATCHAICASDD-------------------------------------------S 350
           E      CHAI A+++                                           +
Sbjct: 461 ENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSA 520

Query: 351 ASSSKA------------------------------------------------------ 410
           ASSS A                                                      
Sbjct: 521 ASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAV 580

Query: 411 ---------------------------------------LKPEAD--------------- 470
                                                   K EAD               
Sbjct: 581 NIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAK 640

Query: 471 --------------------------IKKWVEKSCPVKI--------EASTSLVAPKAPK 521
                                     +K    K   + I        EASTS        
Sbjct: 641 FYLKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHISIGTFHSEKSEASTSTAKSVILM 700

[Close]

BLAST of Sed0010281 vs. ExPASy TrEMBL
Match: A0A5A7V356 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003490 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-50
Identity = 115/191 (60.21%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 330 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFTECSKKLKVGDIEVLRESFT 389
           K EASTS        DEK    PIL YVP+SRRKKGE+PF E S+ LKVGDIEVL+ESFT
Sbjct: 236 KSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQGLKVGDIEVLKESFT 295

Query: 390 TPLTKMKKQWSQRSEEDEKNVVLPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFD 449
           TPLTK+ K   Q  + D     LP++RTKD FDP AY+L+AKAGYDFTTHTEFK L I  
Sbjct: 296 TPLTKITK---QEIKIDLTEASLPKRRTKDEFDPKAYKLMAKAGYDFTTHTEFKSLKI-H 355

Query: 450 DQAKLSSTQKKLLKKGYALPTSRKGLGYKSPEPVRITRREKTKVEDANHITIEEVEESKE 509
           +Q K+SSTQKKLL++G+A+P SRKGLGYK PEP+RITR+ K K+ D+NHI ++EV+  +E
Sbjct: 356 EQPKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHIIVKEVDSMEE 415

Query: 510 NKNVGHRVPAF 521
            +    R  AF
Sbjct: 416 KEGDSQRTSAF 422

The following BLAST results are available for this feature:

BLAST of Sed0010281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	2.4e-55	38.68	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0061113.1	3.6e-11	41.22	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0054152.1	9.5e-52	61.26	uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa]	[more]
TYK05005.1	1.2e-51	33.40	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062018.1	4.0e-50	60.21	uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0010281 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	1.2e-55	38.68	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	1.8e-11	41.22	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UEC9	4.6e-52	61.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C0W6	6.0e-52	33.40	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V356	1.9e-50	60.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0010281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010281.1	Sed0010281.1	mRNA