Sed0010270 (gene) Chayote v1

Overview


Name	Sed0010270
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LSD1
Location	LG10: 195434 .. 201223 (+)
RNA-Seq Expression	Sed0010270
Synteny	Sed0010270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAAAGAAAAAATCAACATTAATCGAAGTTCTCGTTTCCATCCTCATCCTCTCGAGCCGGCAATAGCTCTGCGATCGTCTTCTTCATAATCGATCCTTCGTTCATCATCTCCTCCTCCTCCATTCAGGTTCTTCGTAATTTTATTTGTAATCTCTTCTTCTTTTTCAATTTCTTTCGTTCAATCACATTGTGGGTTTCTGATTGTGCCATAGATTTCATCTCGGGGATTCGACGTGATCGTTTCGGTCGATAATCGGCAAGGAGGAGGATCGGAAGAAGGTGATTCATATTATTTCTTTATTTGGATTTTTAGACTCTTTGTGCTTCTAGATTTTGTGCTCGCTTATGAATTTTCATTGGATGGGCGGATGATTTTTAGTTTTGGGGCATTCTGTTATAGTGCAAATTTCTCAATTACGCACCGTGATTTGATTTTGCAATGTTATTAATTACATATGTTCAACAACGAAGCAGTTTTCGTCGATTTTTCCCCAGTAAGAGATTTCAATATTGATTGTATAGGCTGTACCAAGAGGGCCGAGGACAAGAAGAGCTTCTTAACCCACAAGGTTAGGCGGGTTATGCTTTTCAATTAACTAATGTTGTAAGAGCAAATGAAAGATTAAATCTTTCCCGTGATACAGAGCTAGCGAAACCCAAAACGTCAATTGCCTCAGTTCTTCTAGATCCGTTTTTGTTATCCTTGTTTCTTGGATACAATTTTCAATAATTAGGTTTACTTTTTGGCTTCAGTTTTAGAACTTAATCTCTATGTACCACATCCATCAGTTATAGGCAGAAGAGGGAGCATTTTTCTTATTGAAATGTATGCCCTTGCTTCATCAATGACTTGTATAATTGTTATCTGTTGTTTAATTTTGAGTCTAGTTGAAGGGAAACTTCTGCTTTATATGGAGGAAACTTAATTTCATATTTGTTTATTATTTCAATCTTGCATATAGCTATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGGGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGTATGCATTTTTTCTTCTTCTTATCAATTCTTTTCCTCTTCTTTGGTTGTTGTTAAAAAACGTCAAGGAAATTAGATAAGTAGATGTAATGTGCTAAGATAACTATAGTCTACTTGACCTACTATTTAATTTGGGCTGGAGGGAGAATGGTCAGGTGAGCGACTTTTTTCCTGATACAAATGTGGCATGGAGATTAAATTATTCAAAATAATAGTGACACTCAAACAAATGAATATTTTCATAAAATCTGGAAGGGTCTATCATCGGGTATACAACTTAACAGTAGCTGAAAATTCAAAATTTCCTTATTTTTAGGGAATGTTTGGAAAACTATGCTCCAAGAAAGGGTATTTACATCCCAATGATAATAAACCAATCCATTTGGAAGAATTGCAATTTTATAGAGCCAAGGAAACTGAGACAACAAAGAGGTGTTATTACACCAAGGATCCTTTCAAAATAAAATTTTTCTTCCTAACTTAAACGTTGCCAAAGATTCCACTTGTTTCCATATTTTGGAAATACTGCTCCTAGGGCTGCGAAGACTCATATTGACTTTTACCAGATGTATGCCAGTAAAAAGGTATCATACCTATGAATACTTAGAACAACTTTGTGCCAAAAGGAGTTCGGTTCATGTCTAAATCCCCTACTCCATTTAGCCAAGAGAGCCAAATTCTTATGTTTCAATCAACCCGCCATTATCAAGACCACCTTCATGTTGTGCCTTTGACAATGTTTTAAAAGGCTAAAGGCAATCTCGAGGTTTTTTCTCTTGACCTAGAGGGGAAACCAAGATACAAGAAGGTAAAATGCTCAACTTTACAATTCAAAATAGAAGTTAATTGAATCTACGGTTCATCCACATTGATTCCACAAAATAAATGGCATTGTAACAATTCAATAGTTCTAATAAGTGTACAAGCAACCATCATGGGTTGACCTAAAGGACGTTGGAAATCACAAAATGCTCAACGGAAATGAACTTAATCCATGGTGGCCACCTACTCAAGAATGAATTTCTTATGAATTTTCTTGACAATCAAATGTAGTAGGGTCAAACAGTTGTCATGTGAGATAAGTCGAAGTGTGCTTGTTAGCCCAGCACCATGAGTATAAAAAAATGTACAAGCCATCATCATATTTGCTAAAAAAATGAGTGTGTCATCAGAAAATTGTAGGATAAAAACATGCACTTTAGCTTGACCCACAATGGGGATTATGACCAAGGATTGTGATATAAAATGCTTTAAGAGATTGGAATTTCATCAAGGTTATATCCAAGAGTATATTTTATGTAAGGATATTTTCATTTCATAAGGCAACAATAAAAACAGGGTTTTTTGTGAATAAGAAAAACAAGGTTATGATTTAGGTTGCTTTGCAAGTTTGGAGTCTTGTGGGTTTATGCAGAAAAAGTATACATTTTTTATAGTGGAATACATTCATGTGAAGAGGTTCCCTTTAAAAGATTATTGTGTTTTTCGCTTCTTCATGGAGTATCTTGTTTCGTTTTTTAAGGCTAAATCCTCCACCAAATGCTTCCTAATCGTGTCTTCACAATTTGGTTCTTAAATCTCTTAAAATTCTCAATTTTACCCTAAAGGCATTAAAAACTGTCAATTATGCCTTTCCATGACAAAGTCTATTGAAATTTGTTGGTAGAATTTTTTACCAGGTCTGATTTGAAATGCCATCTATCTCTTATACTTTGTTGATAAATGTGAAATTTTCAAATTATATGATAGCGGGCGGAATAAATCTCATCAATTTTGATAGGAAGTCCTTAATTTTTTTTACCCTCCAACTTACGCTCCCTCATCCTCAAGGCTTTTAGGCTGTGTTTTCCTCTTTTCTTTTATAAATTATGTCATACCTTTCCGAAAATAAAGTGATAGCAGAATAATTGACTTAGACTTGCTTATTCATGATGAATATTATTTGATTATTTCTAACTTTTTTATTTGTTGAAAATAGACGATTAGGTTCTGACAAGAGTAAGAAGAGGTGTTTAAGCATGTCTCTCTTTGTAATAATATATAGCCCCAGCAACTGTTTTAGTCCTTTATAGCTATTTGTCATGTGGTAACTCTTTTGAAGTTTATACCAGAGACTTGGGCCTTGCATATGCAGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTACTTATGCACGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACTGTGAACCTTGCACCTGGTATGGAGAAAATTATCGTTGATTTTGAGTTTTTGAAGGATATAATGGCTACTTGAATTTGACAGCTTCCTATGTGTGGTTGAGCTTTGATTTATTTAGTGAGTTAGGGATAGCAGTAACTGTAAAACTTGGGCATTGAGATGATTGAATTATTGATTTTACTATAATTCTCTTTGTTGTTTTTCATTTTCTCATGTTTATCCCTCTTTTACTTCTGTCGTTCTTTTGTTTATTGTATGCTTGAAGGGAAAAAAACATATAATATCTTTTTAGTAGGTTTTTATTCGCTTGACAACAAAAATTGATATATTGTTACTTGTCGATTGTCTCAAGCACTGCTGTTGTATTGTTTTTTCCCCTCTTTTTCTGATTATTACTTTAAAGGATTTGTTCTAAATATTTTTATTATTATTATGGGTGCAACCTAGAGTAATTGTTTTTAGTTCTTTCTTTAGGGTAGTCTTGCTTGGGAAATAAACTTTTGAAAATTGGGCTGTGGAATCTTATTTGTGCTAATTCAGATCTTGTTTATGGTGGTTTCTGTATCATGCTATTTATTATTAGACGCTCAAAATTTTCTGATGTTACAGTAGTTACTAGTTAGCTAGGTTACTAAGTTCTCATGTTTGGGCGTTGTGACTGTTTAAAAAAAAGCTACGAACCAGGTTGCACATGTTAATTGTGGAAACTGCCGAACAACTCTCGTTTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCACTATGTTACAAATGTTGGAGTAAGCATAATTTATTTTCTTTTAATAGGCAACTGAAATTTCTGGATATTTTTAGTTAGTTGAGTCAGTTGAATGTGATGCGTTGCTAGTACTCTCTTGTCTTGATATGAAGCCATACTTTCTACTGCGTGCCTCCATCATTTACAAGTATTCTTTATGTCGATTGTGGAAATCAACTTAGGTTAGTTTCTATGTGGCTTTAGTAAAACTTGACTAGCTTAATAGGATACAATACAATAACTAGATTTTTAGGTCAAAGCTAAGTTGGTTCAGTTTGTAGCAGTGAGTCCTACACTAGTTAAGTTTCTAAATTGTCGCTCGTTTTTCCGCATGGATCGATATGGAATATTAAGGAAGATTCATAAACGTAGAAAACTTGAAAAACGAATGTATATTCAAGGCATTTAGTTTATTATACTTTCCATGAACCCGAAGTGGTATAGCTGGGATCTGTTAATTGCTTCTGAATACGTTTTCTCTTGCTATACATGATTAATGCCGATATTTTTCTGTCAGTTTATTTTTTTCCATTGACATCTCTTTGCAGATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGACATAATGGAACAATTAGCTCTGGGATGCCCCCTGCATCATCAGTATGTTCTCAAGTTTTTCATTTCTCATATGTCCATCCTTTAAGGCCTATGCATTAAGTGGGTTTGTAATTTTGATTTTGGGCCATAATTGATTTGGGATTGTTCACTATTTTCAATTTTTGCAGTCTCAGACCCAAACTGTTGTAGTTGAGAATCCTATGTCAGTTGATGAAAGTGGCAAATTGGTAAGCATTCATACTGCTCATTCGGTTATTTTCCCTTTACCCTCTCTAGAATGATGTTTTAAAAAGATTAAGTAGCAATGGACTTTTGGGGCTTAGGCACAAAGACGTGCCATTTTTTTTTTGGAAGGCACACTAAACAATAAAAACATTCACAAACAAGAGATAGTTTATAAATATATATTAAAAATAAAAACCCTAAATGCAAGATTTTTTGTTGTTGTTTAGGATTAGTAAAAATTATTTTATTTTATAATTAATCAAGAAGTCTTGAGACACAAGATCAACACCTTAGGCTCCTTTTTAACTGAGCCCCGCTCATTGCTCAATCAAAGCTAGGGGCTAGACTTGTGCCTTGAATCTAGGTGTGCTCGTAAGCTTTTAAAAAAAACTATTACATCTAAACGTGTTAATTTTTAATCTCAATGATAGGTGAGCAATGTTGTTGTTGGTGTCACGACGGATAAAAGGTAACTTGGTGAGATGATGGTTGATTGATGGCATTTACTATTAGCGGCTTAAGAAGAAAGGATGGGAGGGAAGCGATCGATCTATATCTAGTACATCACTATACTGGTTGGGATATGATGATTATGGTTGTGGAAATTTCTGTATAGTTTGTCTTTGGATTTGCCCCGAGGTTACACCATTCATTCTTGAGTCAACTTCAATTTGAGGTTCAGAGAACTTTTGTACCCTGTGAATGTGATGTATATTGTGGACAAAGAAAAATTAAGGGTCTGTACTAAACTACTAGTGATTTCTGTACCGAATCATTGAGCTGTCTTGCAAGTAAAAATATTATACATCCATCATATCCCTTCAGGTATATATGAGTATAAACGTTGTCTTGTAATCTTTTTCCCTTGATTTGCTGATATGGATTTTGAATTT

mRNA sequence

GTAAAAAGAAAAAATCAACATTAATCGAAGTTCTCGTTTCCATCCTCATCCTCTCGAGCCGGCAATAGCTCTGCGATCGTCTTCTTCATAATCGATCCTTCGTTCATCATCTCCTCCTCCTCCATTCAGATTTCATCTCGGGGATTCGACGTGATCGTTTCGGTCGATAATCGGCAAGGAGGAGGATCGGAAGAAGGCTGTACCAAGAGGGCCGAGGACAAGAAGAGCTTCTTAACCCACAAGCTATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGGGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTACTTATGCACGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACTGTGAACCTTGCACCTGCTACGAACCAGGTTGCACATGTTAATTGTGGAAACTGCCGAACAACTCTCGTTTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCACTATGTTACAAATGTTGGAATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGACATAATGGAACAATTAGCTCTGGGATGCCCCCTGCATCATCATCTCAGACCCAAACTGTTGTAGTTGAGAATCCTATGTCAGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTTGGTGTCACGACGGATAAAAGGTAACTTGGTGAGATGATGGTTGATTGATGGCATTTACTATTAGCGGCTTAAGAAGAAAGGATGGGAGGGAAGCGATCGATCTATATCTAGTACATCACTATACTGGTTGGGATATGATGATTATGGTTGTGGAAATTTCTGTATAGTTTGTCTTTGGATTTGCCCCGAGGTTACACCATTCATTCTTGAGTCAACTTCAATTTGAGGTTCAGAGAACTTTTGTACCCTGTGAATGTGATGTATATTGTGGACAAAGAAAAATTAAGGGTCTGTACTAAACTACTAGTGATTTCTGTACCGAATCATTGAGCTGTCTTGCAAGTAAAAATATTATACATCCATCATATCCCTTCAGGTATATATGAGTATAAACGTTGTCTTGTAATCTTTTTCCCTTGATTTGCTGATATGGATTTTGAATTT

Coding sequence (CDS)

ATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGGGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTACTTATGCACGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACTGTGAACCTTGCACCTGCTACGAACCAGGTTGCACATGTTAATTGTGGAAACTGCCGAACAACTCTCGTTTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCACTATGTTACAAATGTTGGAATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGACATAATGGAACAATTAGCTCTGGGATGCCCCCTGCATCATCATCTCAGACCCAAACTGTTGTAGTTGAGAATCCTATGTCAGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTTGGTGTCACGACGGATAAAAGGTAA

Protein sequence

MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR

Homology

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BLAST of Sed0010270 vs. NCBI nr
Match: XP_011658526.1 (vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 2.9e-90
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 236 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 295

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 296 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 355

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGTISSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 356 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 406

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BLAST of Sed0010270 vs. NCBI nr
Match: XP_008439499.1 (PREDICTED: protein LSD1 [Cucumis melo] >XP_008439500.1 PREDICTED: protein LSD1 [Cucumis melo] >KGN49498.1 hypothetical protein Csa_004386 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 2.9e-90
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGTISSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of Sed0010270 vs. NCBI nr
Match: KAA0052452.1 (vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 166/170 (97.65%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 304 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 363

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 364 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 423

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDK 171
           PVHR NGTISSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK
Sbjct: 424 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 473

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BLAST of Sed0010270 vs. NCBI nr
Match: XP_022925664.1 (vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 4.2e-89
Identity = 164/171 (95.91%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 230 MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 289

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 290 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 349

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGT+SSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 350 PVHRRNGTLSSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 400

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BLAST of Sed0010270 vs. NCBI nr
Match: KAG7026406.1 (Vacuolar protein sorting-associated protein 2-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.4 bits (864), Expect = 7.1e-89
Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLIC GCRTLLM+ARGAT
Sbjct: 234 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 293

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTL+FPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 294 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 353

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGTISSGMPPASSSQ+QTVVVENPMSVDESGKLVSN+VVGVTTDKR
Sbjct: 354 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 404

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BLAST of Sed0010270 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-62
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMHARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LM+ RG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 121 NVGISNVRVPIPVHRHNGTISSGMPPASS-----SQTQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQTQTVVVENPMSVDESGKLVSNVVV
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 185

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BLAST of Sed0010270 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.8e-56
Identity = 112/186 (60.22%), Postives = 132/186 (70.97%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMHARG 60
           MQSQ+VC GCRS+L YP GA +VCCALC  +T+VPPP    +MA LICGGCRTLLM+ R 
Sbjct: 1   MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60

Query: 61  ATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVR- 120
           A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAPSVKCAICHY+TN G++ V  
Sbjct: 61  ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120

Query: 121 VPIPVHRHNGTISSGMP-------------PASSSQTQTVVVENPMSVDESGKLVSNVVV 171
            P P+   +G+  +  P             P S  Q  TVVVENPM+VDE GKLVSNVVV
Sbjct: 121 TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVV 180

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BLAST of Sed0010270 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-54
Identity = 106/169 (62.72%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMHARGA 60
           MQSQ+VC GCR+ILLYP GA +VCCA+C+ V+S  P PG D+A LICGGCRTLLM+ R A
Sbjct: 1   MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60

Query: 61  TSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVP 120
           TSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPSVKCAIC+++TN G++ +R  
Sbjct: 61  TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMR-H 120

Query: 121 IPVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTT 169
           +P +  + T  S   P + SQ  TVVVENPM+VD  GKLVSNVVVGVTT
Sbjct: 121 LPPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVVGVTT 168

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BLAST of Sed0010270 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.0e-47
Identity = 84/113 (74.34%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 2   QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGATS 61
           QSQLVCSGCR++L+YP GAT+VCCA+C+TVT+VP PGT+MAQL+CGGC TLLM+ RGATS
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 122

Query: 62  VRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGIS 115
           V+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVKCA+C++VT+VG S
Sbjct: 123 VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 175

[Close]

BLAST of Sed0010270 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-46
Identity = 83/111 (74.77%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 2   QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGATS 61
           QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+CGGC TLLM+ RGATS
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG 113
           V+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVKCA+C++VT+VG
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

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BLAST of Sed0010270 vs. ExPASy TrEMBL
Match: A0A1S3AZJ7 (protein LSD1 OS=Cucumis melo OX=3656 GN=LOC103484280 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGTISSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of Sed0010270 vs. ExPASy TrEMBL
Match: A0A0A0KJ18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526320 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGTISSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of Sed0010270 vs. ExPASy TrEMBL
Match: A0A5A7U9M7 (Vacuolar protein sorting-associated protein 2-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00490 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.3e-90
Identity = 166/170 (97.65%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 304 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 363

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 364 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 423

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDK 171
           PVHR NGTISSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK
Sbjct: 424 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 473

[Close]

BLAST of Sed0010270 vs. ExPASy TrEMBL
Match: A0A6J1ECU7 (vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111433013 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 164/171 (95.91%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLM+ARGAT
Sbjct: 230 MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 289

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 290 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 349

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGT+SSGMPP+SSSQ+QTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 350 PVHRRNGTLSSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 400

[Close]

BLAST of Sed0010270 vs. ExPASy TrEMBL
Match: A0A6J1KY38 (vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111497397 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.4e-89
Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMHARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLIC GCRTLLM+ARGAT
Sbjct: 229 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 288

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTL+FPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 289 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 348

Query: 121 PVHRHNGTISSGMPPASSSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHR NGTISSGMPPASSSQ+QTVVVENPMSVDESGKLVSN+VVGVTTDKR
Sbjct: 349 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 399

[Close]

BLAST of Sed0010270 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMHARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LM+ RG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 121 NVGISNVRVPIPVHRHNGTISSGMPPASS-----SQTQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQTQTVVVENPMSVDESGKLVSNVVV
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 185

[Close]

BLAST of Sed0010270 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMHARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LM+ RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRHNGTISSGMPPASS-----SQTQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQTQTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of Sed0010270 vs. TAIR 10
Match: AT4G20380.3 (LSD1 zinc finger family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMHARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LM+ RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRHNGTISSGMPPASS-----SQTQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQTQTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of Sed0010270 vs. TAIR 10
Match: AT4G20380.4 (LSD1 zinc finger family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMHARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LM+ RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRHNGTISSGMPPASS-----SQTQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQTQTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of Sed0010270 vs. TAIR 10
Match: AT4G20380.5 (LSD1 zinc finger family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMHARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LM+ RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRHNGTISSGMPPASS-----SQTQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQTQTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

The following BLAST results are available for this feature:

BLAST of Sed0010270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658526.1	2.9e-90	97.66	vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus]	[more]
XP_008439499.1	2.9e-90	97.66	PREDICTED: protein LSD1 [Cucumis melo] >XP_008439500.1 PREDICTED: protein LSD1 [...	[more]
KAA0052452.1	1.1e-89	97.65	vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. ...	[more]
XP_022925664.1	4.2e-89	95.91	vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata...	[more]
KAG7026406.1	7.1e-89	95.91	Vacuolar protein sorting-associated protein 2-like 2 [Cucurbita argyrosperma sub...	[more]

BLAST of Sed0010270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P94077	2.0e-62	66.84	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]
Q6ASS2	2.8e-56	60.22	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
Q2QMB3	1.6e-54	62.72	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q0J7V9	7.0e-47	74.34	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	2.7e-46	74.77	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]

BLAST of Sed0010270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZJ7	1.4e-90	97.66	protein LSD1 OS=Cucumis melo OX=3656 GN=LOC103484280 PE=4 SV=1	[more]
A0A0A0KJ18	1.4e-90	97.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526320 PE=4 SV=1	[more]
A0A5A7U9M7	5.3e-90	97.65	Vacuolar protein sorting-associated protein 2-like protein 2 OS=Cucumis melo var...	[more]
A0A6J1ECU7	2.0e-89	95.91	vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita moscha...	[more]
A0A6J1KY38	3.4e-89	95.91	vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita maxima...	[more]

BLAST of Sed0010270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20380.2	1.4e-63	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.1	1.4e-63	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.3	1.4e-63	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.4	1.4e-63	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.5	1.4e-63	66.84	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 46..70 e-value: 1.2E-11 score: 44.2 coord: 7..31 e-value: 3.5E-10 score: 39.5 coord: 84..108 e-value: 6.6E-13 score: 48.2
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 43..72 e-value: 2.2E-15 score: 54.0 coord: 4..34 e-value: 6.3E-12 score: 42.9 coord: 81..111 e-value: 2.3E-11 score: 41.1
None	No IPR available	PANTHER	PTHR31747:SF19	LSD1-LIKE PROTEIN	coord: 1..169
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010270.1	Sed0010270.1	mRNA
Sed0010270.2	Sed0010270.2	mRNA
Sed0010270.3	Sed0010270.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0005634	nucleus