Sed0010246 (gene) Chayote v1

Overview


Name	Sed0010246
Type	gene
Organism	Sechium edule (Chayote v1)
Description	photosystem I reaction center subunit N, chloroplastic
Location	LG10: 9870270 .. 9872163 (-)
RNA-Seq Expression	Sed0010246
Synteny	Sed0010246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAGATGGAACAGAAATTTGAAGCACTCATTCAGATTTTCAAAGTGGGTCCAAAATGGAAGCTCGCCACACGCAATTCCATGTCCAAAAACCCTAATCACAGCGCCAATTGGGAACGAGGAAATCTCACCTTATCCACAATCCCTTATCCAAATCCCTCTTTTATCAGATTCCCCAATAATCCCTTTTCCCCCATTAACAACCCTCCGCCATTAATCCCTCCTTCAGAGCTCCCATTTCCTCTAACCAATGGCGACCATGAATTCCACCGTCCTGGCCTGCAACTACGCCATTTCCGGCGCTGGGTCGCCCGAGCTTAGCTCGAAGCTCACCGCCGCCGTGCCGTCGTCCGTTGCGCCGCCTGGTTACAAGTTGCCTGCGATCAGGGCTCAACAGGCCAGGGCTCCTGAACCCAAGAATGAAGGAAGAAGAACTGCGCTTCTGCTCCTTGGAGCTTCCCTCTTGGCTGCGGCTTCATCGTCCAACTCTTCGGCTAATGCCGGAGTCATTGATGACTACCTTGAGAAGAGTAAAGCTAACAAGGTACCTCTACTCTACTCTCTCATTTACTCAAATTGCTTTTTTCATTTATTTTTAGATCATGTTTTGTTAATGTAGCTTCAAATGCTCTGTTTGGATTCTTTGTTCTGTCTTAGCATACAACTGTATTTGGTTCTTGTTTGTTGCTGAAATTTTCATGGTACATGAAACAAGAAACTTTTGGATGGCATTTGTATTGTATCTGGTAGACTATGGAGTCTAAGATTTAAGGATAAGAAACACCAAGTATAGATATGACCTAATAAATCTATATCATTTTATACCAAAAGAAAGTCAATGACTAATGTATTTATGTGCTTAGACCACGAGTTCGATGTATTTCACTTTCTAAATTTATTGTTTTCATCTTATGTTACTATTTATATCAATTTAGTGTGCATAATAAGTCTTTCAATTGTGTCTAACAAATGTAGGACTTATATTTATTCTGTATAACAGTGTCTAACGCATGTCTAGTGTGCTAACAAGTGTATGATGTATGTCAAACAAGTATTGCCAAAATGAACATACCTCAACTGGTGTCTTATATTAATGACCTTTGGTTAGAGGTTCGATTCCCGACCCCACGTATTGTAAAAAAAAGTATGCGACACGGACATGCTAGGCAAACATAAATTATGTGCTTCCTACTTGTGAGAATGTCACAAGGACGAAAATAGGATGGTTTAGTCGTTTGTATGATAAATCTATCATGTTCTTAACCCTGCTATTGCAATAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGGTTTGAACATTGTTTAGCTGTGGTATATTCACTATTTGGCTTTGAAATGTTGACAGGTAGTAAATGTCTATTTTGTTGATGAATTGTTTCTATGTTTTTTTTTCTTGAATGCAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAGTGGTGAAGAAGAGAACAATTTAAAGTTTTTATATCCCTCACCACCATTGGTCACTCACTCTTCCCTTGTATCTAATTTTCAACTTTTAAAAAGTGTGAAATTTTATTATGTCTTTTTGGGGTCATTTGTTCCAATTCCATTGCTTTCTTTGCTCTTTGAGACAAAAAGAAGCCAAGTGAAATAGTAGAAACCCTAGACATTTATTGCATTAGCATTTGTTAATGTTCTTCCTCAATGGACATCACACTTCCAGTTAATATATTATCTAAAAGAAATAGCCTTTTGAAAGAG

mRNA sequence

ACAAGATGGAACAGAAATTTGAAGCACTCATTCAGATTTTCAAAGTGGGTCCAAAATGGAAGCTCGCCACACGCAATTCCATGTCCAAAAACCCTAATCACAGCGCCAATTGGGAACGAGGAAATCTCACCTTATCCACAATCCCTTATCCAAATCCCTCTTTTATCAGATTCCCCAATAATCCCTTTTCCCCCATTAACAACCCTCCGCCATTAATCCCTCCTTCAGAGCTCCCATTTCCTCTAACCAATGGCGACCATGAATTCCACCGTCCTGGCCTGCAACTACGCCATTTCCGGCGCTGGGTCGCCCGAGCTTAGCTCGAAGCTCACCGCCGCCGTGCCGTCGTCCGTTGCGCCGCCTGGTTACAAGTTGCCTGCGATCAGGGCTCAACAGGCCAGGGCTCCTGAACCCAAGAATGAAGGAAGAAGAACTGCGCTTCTGCTCCTTGGAGCTTCCCTCTTGGCTGCGGCTTCATCGTCCAACTCTTCGGCTAATGCCGGAGTCATTGATGACTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAGTGGTGAAGAAGAGAACAATTTAAAGTTTTTATATCCCTCACCACCATTGGTCACTCACTCTTCCCTTGTATCTAATTTTCAACTTTTAAAAAGTGTGAAATTTTATTATGTCTTTTTGGGGTCATTTGTTCCAATTCCATTGCTTTCTTTGCTCTTTGAGACAAAAAGAAGCCAAGTGAAATAGTAGAAACCCTAGACATTTATTGCATTAGCATTTGTTAATGTTCTTCCTCAATGGACATCACACTTCCAGTTAATATATTATCTAAAAGAAATAGCCTTTTGAAAGAG

Coding sequence (CDS)

ATGGCGACCATGAATTCCACCGTCCTGGCCTGCAACTACGCCATTTCCGGCGCTGGGTCGCCCGAGCTTAGCTCGAAGCTCACCGCCGCCGTGCCGTCGTCCGTTGCGCCGCCTGGTTACAAGTTGCCTGCGATCAGGGCTCAACAGGCCAGGGCTCCTGAACCCAAGAATGAAGGAAGAAGAACTGCGCTTCTGCTCCTTGGAGCTTCCCTCTTGGCTGCGGCTTCATCGTCCAACTCTTCGGCTAATGCCGGAGTCATTGATGACTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAGTGGTGA

Protein sequence

MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPPGYKLPAIRAQQARAPEPKNEGRRTALLLLGASLLAAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

Homology

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BLAST of Sed0010246 vs. NCBI nr
Match: XP_038883748.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 151/172 (87.79%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAP--PGYKLPAIRAQQARAPEPKNE 60
           MATMNS+VLACNYAISGAGS +L+SKLT AVPS  +P   GYKLPAIRAQQAR PE KNE
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLT-AVPSVASPGVVGYKLPAIRAQQARVPEAKNE 60

Query: 61  GRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRTALL LGA+L  AAA++SNSSANAGVI+DYLEKSKANKELNDKKRLATSGANFARAY
Sbjct: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           TV+FGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

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BLAST of Sed0010246 vs. NCBI nr
Match: XP_023518442.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.4 bits (729), Expect = 3.2e-73
Identity = 152/173 (87.86%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPP---GYKLPAIRAQQARAPEPKN 60
           MATMNS+VLACNYAISGAGS EL+SKL+A   +SVA P   GYKLPAIRAQQAR PE KN
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAV--TSVASPGVSGYKLPAIRAQQARVPEAKN 60

Query: 61  EGRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           EGRRTALL LGASL  AAA+SSNSSANAGVI++YLEKSKANKELNDKKRLATSGANFARA
Sbjct: 61  EGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           YTVQFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 YTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. NCBI nr
Match: KAG6595132.1 (Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.4 bits (729), Expect = 3.2e-73
Identity = 152/173 (87.86%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPP---GYKLPAIRAQQARAPEPKN 60
           MATMNS+VLACNYAISGAGS EL+SKL+A   +SVA P   GYKLPAIRAQQAR PE KN
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAV--TSVASPGVSGYKLPAIRAQQARVPESKN 60

Query: 61  EGRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           EGRRTALL LGASL  AAA+SSNSSANAGVI++YLEKSKANKELNDKKRLATSGANFARA
Sbjct: 61  EGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           YTVQFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 YTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. NCBI nr
Match: XP_008441057.1 (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo] >KAA0025524.1 photosystem I reaction center subunit N [Cucumis melo var. makuwa] >TYK25680.1 photosystem I reaction center subunit N [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 150/172 (87.21%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAP--PGYKLPAIRAQQARAPEPKNE 60
           MATMNS+VLACNYAISGAGS +L+SKLT AVPS  +P   GYKLPAIRAQQAR PE KNE
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLT-AVPSVASPGVVGYKLPAIRAQQARVPEAKNE 60

Query: 61  GRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRTALL LGA+L  AAA++SNSSANAGVI+DYLEKSKANKELNDKKRLATSGANFARAY
Sbjct: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           TV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. NCBI nr
Match: XP_023003251.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 7.0e-73
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPP---GYKLPAIRAQQARAPEPKN 60
           MATMNS+VLACNYAISGAGS EL+SKL+A   +SVA P   GYKLPAIRAQQAR PE KN
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAV--TSVASPGVSGYKLPAIRAQQARVPEAKN 60

Query: 61  EGRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           EGRRTALL LGASL  AAA+SSNS+ANAGVI++YLEKSKANKELNDKKRLATSGANFARA
Sbjct: 61  EGRRTALLFLGASLFAAAAASSNSTANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           YTVQFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 YTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

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BLAST of Sed0010246 vs. ExPASy Swiss-Prot
Match: P49107 (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAN PE=1 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-54
Identity = 116/173 (67.05%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPPGYK---LPAIRAQQARAPE-PK 60
           MA MNS+VL C+YAI+G+GS EL+ K+   V SSV     K   +P I+AQ+    +   
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKV-GLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDG 60

Query: 61  NEGRRTALLLLGASLLAAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           + GRR+A++ L A+L + A+ S +SANAGVID+YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  SNGRRSAMVFLAATLFSTAAVS-ASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           +TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. ExPASy Swiss-Prot
Match: P31093 (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAN PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-45
Identity = 100/155 (64.52%), Postives = 117/155 (75.48%), Query Frame = 0


Query: 15  ISGAGSPELSSKLTAAVPSSVAPPGYKLPAIRAQQARAPEPKNEGRRTALLLLGASLLAA 74
           ++G  +  +  K  AAVP S +P   K    R Q A A +     RR+ALL L A++ AA
Sbjct: 1   MAGVNTSVVGLKPAAAVPQSASPAAAK----RVQVAPAKD-----RRSALLGL-AAVFAA 60

Query: 75  ASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQ 134
            ++S  SA A V D+YLEKSK NKELNDKKR ATSGANFARAYTVQFG+CKFP NFTGCQ
Sbjct: 61  TAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQ 120

Query: 135 DLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           DLAKQKKVPFI+DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 121 DLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145

[Close]

BLAST of Sed0010246 vs. ExPASy Swiss-Prot
Match: O65107 (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=PSAN PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-41
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 77  SSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDL 136
           ++  SA A + D+YLEKSKANKELNDKKRLATSGANFARAYTV+FG+C+FP NFTGCQDL
Sbjct: 20  TTTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDL 79

Query: 137 AKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           AKQKKVPFISDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 80  AKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

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BLAST of Sed0010246 vs. ExPASy Swiss-Prot
Match: Q9SBN5 (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067 GN=PSAN PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-25
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 66  LLGASLLAAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCK 125
           LLG  +L  A++   +ANAGV++D L KS ANK LN+KKRLATS AN AR+ TV  GTC+
Sbjct: 35  LLGLGVLLGAAALAPAANAGVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQ 94

Query: 126 FPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGS 164
           FPENF GC++LA  K V +I++DL++ECEGKD   CGS
Sbjct: 95  FPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132

[Close]

BLAST of Sed0010246 vs. ExPASy TrEMBL
Match: A0A5D3DQX9 (Photosystem I reaction center subunit N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00100 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 150/172 (87.21%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAP--PGYKLPAIRAQQARAPEPKNE 60
           MATMNS+VLACNYAISGAGS +L+SKLT AVPS  +P   GYKLPAIRAQQAR PE KNE
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLT-AVPSVASPGVVGYKLPAIRAQQARVPEAKNE 60

Query: 61  GRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRTALL LGA+L  AAA++SNSSANAGVI+DYLEKSKANKELNDKKRLATSGANFARAY
Sbjct: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           TV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. ExPASy TrEMBL
Match: A0A1S3B240 (photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485284 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 150/172 (87.21%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAP--PGYKLPAIRAQQARAPEPKNE 60
           MATMNS+VLACNYAISGAGS +L+SKLT AVPS  +P   GYKLPAIRAQQAR PE KNE
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLT-AVPSVASPGVVGYKLPAIRAQQARVPEAKNE 60

Query: 61  GRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRTALL LGA+L  AAA++SNSSANAGVI+DYLEKSKANKELNDKKRLATSGANFARAY
Sbjct: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           TV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. ExPASy TrEMBL
Match: A0A6J1KNN3 (photosystem I reaction center subunit N, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496916 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.4e-73
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPP---GYKLPAIRAQQARAPEPKN 60
           MATMNS+VLACNYAISGAGS EL+SKL+A   +SVA P   GYKLPAIRAQQAR PE KN
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAV--TSVASPGVSGYKLPAIRAQQARVPEAKN 60

Query: 61  EGRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           EGRRTALL LGASL  AAA+SSNS+ANAGVI++YLEKSKANKELNDKKRLATSGANFARA
Sbjct: 61  EGRRTALLFLGASLFAAAAASSNSTANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           YTVQFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 YTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. ExPASy TrEMBL
Match: A0A6J1HHG7 (photosystem I reaction center subunit N, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463523 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.5e-73
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPP---GYKLPAIRAQQARAPEPKN 60
           MATMNS+VLACNYAISGAGS EL+SKL+A   +SVA P   GYKLPAIRA+QAR PE KN
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAV--TSVASPGVSGYKLPAIRARQARVPEAKN 60

Query: 61  EGRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           EGRRTALL LGASL  AAA+SSNSSANAGVI++YLEKSKANKELNDKKRLATSGANFARA
Sbjct: 61  EGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           YTVQFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 YTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Sed0010246 vs. ExPASy TrEMBL
Match: A0A0A0KFM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 148/172 (86.05%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAP--PGYKLPAIRAQQARAPEPKNE 60
           MATMNS+VLACNYAISGAGS +L+SKLTAA PS  +P   GYKLPAIRAQQ + PE KN+
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAA-PSVASPGVVGYKLPAIRAQQTKVPEAKND 60

Query: 61  GRRTALLLLGASLL-AAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRTALL LGASL  AAA++SNSSANAGVI+DYLEKSKANKELNDKKRLATSGANFARAY
Sbjct: 61  GRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           TV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

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BLAST of Sed0010246 vs. TAIR 10
Match: AT5G64040.1 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) )

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-55
Identity = 116/173 (67.05%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPPGYK---LPAIRAQQARAPE-PK 60
           MA MNS+VL C+YAI+G+GS EL+ K+   V SSV     K   +P I+AQ+    +   
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKV-GLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDG 60

Query: 61  NEGRRTALLLLGASLLAAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           + GRR+A++ L A+L + A+ S +SANAGVID+YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  SNGRRSAMVFLAATLFSTAAVS-ASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
           +TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

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BLAST of Sed0010246 vs. TAIR 10
Match: AT5G64040.2 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) )

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-37
Identity = 90/144 (62.50%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MATMNSTVLACNYAISGAGSPELSSKLTAAVPSSVAPPGYK---LPAIRAQQARAPE-PK 60
           MA MNS+VL C+YAI+G+GS EL+ K+   V SSV     K   +P I+AQ+    +   
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKV-GLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDG 60

Query: 61  NEGRRTALLLLGASLLAAASSSNSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARA 120
           + GRR+A++ L A+L + A+ S +SANAGVID+YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  SNGRRSAMVFLAATLFSTAAVS-ASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQK 141
           +TVQFG+CKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

The following BLAST results are available for this feature:

BLAST of Sed0010246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883748.1	2.4e-73	87.79	photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa his...	[more]
XP_023518442.1	3.2e-73	87.86	photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita pep...	[more]
KAG6595132.1	3.2e-73	87.86	Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyr...	[more]
XP_008441057.1	5.4e-73	87.21	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]...	[more]
XP_023003251.1	7.0e-73	87.28	photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita max...	[more]

BLAST of Sed0010246 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49107	1.5e-54	67.05	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana O...	[more]
P31093	2.9e-45	64.52	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=451...	[more]
O65107	1.9e-41	82.80	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX...	[more]
Q9SBN5	7.4e-25	59.18	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067...	[more]

BLAST of Sed0010246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQX9	2.6e-73	87.21	Photosystem I reaction center subunit N OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3B240	2.6e-73	87.21	photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A6J1KNN3	3.4e-73	87.28	photosystem I reaction center subunit N, chloroplastic isoform X1 OS=Cucurbita m...	[more]
A0A6J1HHG7	4.5e-73	87.28	photosystem I reaction center subunit N, chloroplastic-like isoform X1 OS=Cucurb...	[more]
A0A0A0KFM1	2.2e-72	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=3 SV=1	[more]

BLAST of Sed0010246 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64040.1	1.1e-55	67.05	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]
AT5G64040.2	3.9e-37	62.50	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044907	Photosystem I reaction centre subunit N superfamily	GENE3D	4.10.1190.10		coord: 85..169 e-value: 3.7E-53 score: 179.8
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 43..169 e-value: 8.4E-66 score: 220.1
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PANTHER	PTHR36814	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 1..169
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010246.1	Sed0010246.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0009522	photosystem I