Sed0010236 (gene) Chayote v1

Overview
NameSed0010236
Typegene
OrganismSechium edule (Chayote v1)
Descriptionprotein Asterix-like
LocationLG08: 1506733 .. 1508757 (-)
RNA-Seq ExpressionSed0010236
SyntenySed0010236
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACACAATCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTCGTTGCTCCGGCAGTAAATCCTCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGGTTTGTCTCTTTCTTTTTCACGACTGATATGACCGATAACTTTTGGGGATCTTACTTTTCACTCTTAATTTTGGTTGAAATTAATCAGTACAAGCTTAGTTCGTGGATTGCCATCATATTTTGCGCCCAATCGCTTGCCAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTGAGTCTCTGTTTATTAGTAATTGTGTCTTTTTTATCGAATTAATAGCTAAATTTGGGCTTATCTGCTGAGTTGGGTTTATTAGGTTGACTTTTATGTTATGTAGATGCAAGTTTTGATGTTTCTTAGCTAGGGATTGTTCTAATTCTAGGGTTCAACCATGTTGGATTGCAAATTCTTTTATTTGTTTATTTTGATATCCATGATTGTCCGGGTCTGCTTACGTGCACCTCGACTAATGTCACGAGATCTGACTCTACAATATTTGGATGTCAAGGAAACAACTAGAAAATTAATGTCCAGGTAGGTGGCCACCGGGGATCGAAACCCATCGCTATGGATTTATATGTTGATATCATAGAATTGTGCTCGCACTTCAATCATTTTACCCTGTACAAATTACTATAATGATTGTGAAATTTGGACTACAGAAAATGTTTGAATCAGTGTACCTCTACACGGGTGGCCTGATTTTGTTTGAATCTTAGTAGTCAGCCACCTGATTTATTTTTTCTTTTTTTATATAAGTGAGTATCTAAATCAGCTTCTGTGCATCTCGACTACGGTTAGAGAGATATTATCGGACCTTACAACATTTGCATATCAAGAAAATCTATAAGAAACTAATTCCTAAGTAGGTTGTCATCATGGATTGAATCCATAGCCATTTATTTACTTAAGGTCTTTTTAACCATTAGGTTATTCTATGATTGTTATAACCCTGTAAGTTTTTGGATACCAAATATTGCAAGATTGGCTTTGCACCATGAATATTGAATTTGATATGATCACACTAAAAAAAGGATTGAAGAGATAGATTCTACAATTTTTAGATTCAGAATTCCTTGTGTTCTCAACACTTAGATTTAGGAATCTTGAATCTTAGATATGAACTGGCATCTAGTCATTTACAATTGTAGTTTACTTTACCTGATGTACGCCTTTTGTATGCCAATACTAAACATTCCCTCCTGACAGATTTCTATTACATTTCGATTTTTCATTACTGTATTGTACTTTAGAGTCTTAGAACGGTTAACTTTCCTTGCTAATTAATTGGAACCACCAGATGATTGAAACAAGAACCGGATTATAAACTTGCAAGATAAGAAATTAGGTAGAATATCCCAAAGTGGAACTTAAACATTTTCTCTCAAGCAAACTCAAGCTTCTATGACTATATATAAATTGTGTTTTCACCCCTCTCATTAACTCTGTTTACAACCACCTATCAGTAGCAAACTACTTAGCTAATGATACTAATACGTCCTTGGAATCCTAGTACTATTTCTTACTCCTGCCCTAATAGTATTCCTAACGGTTACTTGGGAAAAAATATTGTCAGGATTTAGTTATGGTTTATGAGTAATTATTATTATTATTATTTGTATATATTAATGAGTGTCTATTCTTACTATACAAATTGCTTGATCCTCTAACTTTTGGTCATGGATTTGAATTCCTCACCACACAAGCCCAACTGTCATTTGAAACTGCAACTCTTTAGTTTATCTTGAATCATCTTGTTTTAATGATTTTTCTTTAGCATTATCACATTTTAGTATGATTCAATGGCGTTGGCTTGTTCTCGCTCGTGTGTGGCTTTAACTCCTCTTTGTTCTTAAATCCAGGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGACCTGCACGACCAGGAACAAAGAGTTAG

mRNA sequence

ATGTCGACACAATCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTCGTTGCTCCGGCAGTAAATCCTCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGATTGCCATCATATTTTGCGCCCAATCGCTTGCCAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGACCTGCACGACCAGGAACAAAGAGTTAG

Coding sequence (CDS)

ATGTCGACACAATCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTCGTTGCTCCGGCAGTAAATCCTCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGATTGCCATCATATTTTGCGCCCAATCGCTTGCCAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGACCTGCACGACCAGGAACAAAGAGTTAG

Protein sequence

MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCAQSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS
Homology
BLAST of Sed0010236 vs. NCBI nr
Match: XP_022933634.1 (protein Asterix-like [Cucurbita moschata] >XP_023007397.1 protein Asterix-like [Cucurbita maxima] >XP_023529496.1 protein Asterix-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSAAKPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS
Sbjct: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 101

BLAST of Sed0010236 vs. NCBI nr
Match: KAG6587575.1 (Protein Asterix, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSAAKPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 47  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 106

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS
Sbjct: 107 QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 147

BLAST of Sed0010236 vs. NCBI nr
Match: XP_038880376.1 (protein Asterix [Benincasa hispida])

HSP 1 Score: 197.2 bits (500), Expect = 6.8e-47
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 30  MSTQANDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 89

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYLGPARPGTKS
Sbjct: 90  QSLANMRNVENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 130

BLAST of Sed0010236 vs. NCBI nr
Match: XP_008453260.1 (PREDICTED: protein Asterix [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 9.8e-46
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSA KPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYL PARPGTKS
Sbjct: 61  QSLANMRNVENDLKQISMAMMFAIMGLVTNYLSPARPGTKS 101

BLAST of Sed0010236 vs. NCBI nr
Match: XP_004138191.1 (protein Asterix [Cucumis sativus] >KGN63717.1 hypothetical protein Csa_014204 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.7e-45
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSA KPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYL PARPG KS
Sbjct: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPARPGAKS 101

BLAST of Sed0010236 vs. ExPASy Swiss-Prot
Match: Q9SD88 (Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-39
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0

Query: 6   NDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCAQSLAN 65
           NDPRQPSAAKP++   V P+DLPVDYSGFIAV+ G++GVMFRYK+ SW+AIIFCAQSLAN
Sbjct: 12  NDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLAN 71

Query: 66  MRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTK 101
           MRN+ENDLKQISMAMMFAIMGLVTNYLGP RP TK
Sbjct: 72  MRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106

BLAST of Sed0010236 vs. ExPASy Swiss-Prot
Match: Q09993 (Protein Asterix OS=Caenorhabditis elegans OX=6239 GN=K10B2.4 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 31/101 (30.69%), Postives = 50/101 (49.50%), Query Frame = 0

Query: 4   QSNDPRQPSAA---KPFVAPAVNPQDLPVD----YSGFIAVVFGIAGVMFRYKLSSWIAI 63
           Q+ DPR+ +     KP  + A   Q +  D    Y   + ++F + G+M R K  SW+A+
Sbjct: 3   QNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWLAL 62

Query: 64  IFCAQSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARP 98
           +    S AN R   +D KQI  + M ++  +V +YL    P
Sbjct: 63  VCSCISFANTRT-SDDAKQIVSSFMLSVSAVVMSYLQNPSP 102

BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A6J1KYK4 (protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111499903 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSAAKPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS
Sbjct: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 101

BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A6J1F0A5 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111440996 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSAAKPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS
Sbjct: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 101

BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A1S3BWL0 (protein Asterix OS=Cucumis melo OX=3656 GN=LOC103494034 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.7e-46
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSA KPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYL PARPGTKS
Sbjct: 61  QSLANMRNVENDLKQISMAMMFAIMGLVTNYLSPARPGTKS 101

BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A0A0LSF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSA KPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYL PARPG KS
Sbjct: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPARPGAKS 101

BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A6J1E5Z1 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCA 60
           MSTQ+NDPRQPSAAKPFV+P VNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSW+AIIFCA
Sbjct: 1   MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYL P RPGTKS
Sbjct: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 101

BLAST of Sed0010236 vs. TAIR 10
Match: AT5G07960.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 163.7 bits (413), Expect = 7.7e-41
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0

Query: 6   NDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCAQSLAN 65
           NDPRQPSAAKP++   V P+DLPVDYSGFIAV+ G++GVMFRYK+ SW+AIIFCAQSLAN
Sbjct: 12  NDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLAN 71

Query: 66  MRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTK 101
           MRN+ENDLKQISMAMMFAIMGLVTNYLGP RP TK
Sbjct: 72  MRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022933634.15.2e-4797.03protein Asterix-like [Cucurbita moschata] >XP_023007397.1 protein Asterix-like [... [more]
KAG6587575.15.2e-4797.03Protein Asterix, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038880376.16.8e-4797.03protein Asterix [Benincasa hispida][more]
XP_008453260.19.8e-4695.05PREDICTED: protein Asterix [Cucumis melo][more]
XP_004138191.13.7e-4594.06protein Asterix [Cucumis sativus] >KGN63717.1 hypothetical protein Csa_014204 [C... [more]
Match NameE-valueIdentityDescription
Q9SD881.1e-3982.11Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1[more]
Q099933.3e-0430.69Protein Asterix OS=Caenorhabditis elegans OX=6239 GN=K10B2.4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1KYK42.5e-4797.03protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111499903 PE=4 SV=1[more]
A0A6J1F0A52.5e-4797.03protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111440996 PE=4 SV=1[more]
A0A1S3BWL04.7e-4695.05protein Asterix OS=Cucumis melo OX=3656 GN=LOC103494034 PE=4 SV=1[more]
A0A0A0LSF01.8e-4594.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1[more]
A0A6J1E5Z14.0e-4593.07protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G07960.17.7e-4182.11unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005351PAT complex subunit AsterixPFAMPF03669UPF0139coord: 5..98
e-value: 2.9E-36
score: 123.2
IPR005351PAT complex subunit AsterixPANTHERPTHR13193CGI-140coord: 2..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010236.1Sed0010236.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0045048 protein insertion into ER membrane
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
molecular_function GO:0044183 protein folding chaperone