Sed0010236 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGACACAATCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTCGTTGCTCCGGCAGTAAATCCTCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGGTTTGTCTCTTTCTTTTTCACGACTGATATGACCGATAACTTTTGGGGATCTTACTTTTCACTCTTAATTTTGGTTGAAATTAATCAGTACAAGCTTAGTTCGTGGATTGCCATCATATTTTGCGCCCAATCGCTTGCCAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTGAGTCTCTGTTTATTAGTAATTGTGTCTTTTTTATCGAATTAATAGCTAAATTTGGGCTTATCTGCTGAGTTGGGTTTATTAGGTTGACTTTTATGTTATGTAGATGCAAGTTTTGATGTTTCTTAGCTAGGGATTGTTCTAATTCTAGGGTTCAACCATGTTGGATTGCAAATTCTTTTATTTGTTTATTTTGATATCCATGATTGTCCGGGTCTGCTTACGTGCACCTCGACTAATGTCACGAGATCTGACTCTACAATATTTGGATGTCAAGGAAACAACTAGAAAATTAATGTCCAGGTAGGTGGCCACCGGGGATCGAAACCCATCGCTATGGATTTATATGTTGATATCATAGAATTGTGCTCGCACTTCAATCATTTTACCCTGTACAAATTACTATAATGATTGTGAAATTTGGACTACAGAAAATGTTTGAATCAGTGTACCTCTACACGGGTGGCCTGATTTTGTTTGAATCTTAGTAGTCAGCCACCTGATTTATTTTTTCTTTTTTTATATAAGTGAGTATCTAAATCAGCTTCTGTGCATCTCGACTACGGTTAGAGAGATATTATCGGACCTTACAACATTTGCATATCAAGAAAATCTATAAGAAACTAATTCCTAAGTAGGTTGTCATCATGGATTGAATCCATAGCCATTTATTTACTTAAGGTCTTTTTAACCATTAGGTTATTCTATGATTGTTATAACCCTGTAAGTTTTTGGATACCAAATATTGCAAGATTGGCTTTGCACCATGAATATTGAATTTGATATGATCACACTAAAAAAAGGATTGAAGAGATAGATTCTACAATTTTTAGATTCAGAATTCCTTGTGTTCTCAACACTTAGATTTAGGAATCTTGAATCTTAGATATGAACTGGCATCTAGTCATTTACAATTGTAGTTTACTTTACCTGATGTACGCCTTTTGTATGCCAATACTAAACATTCCCTCCTGACAGATTTCTATTACATTTCGATTTTTCATTACTGTATTGTACTTTAGAGTCTTAGAACGGTTAACTTTCCTTGCTAATTAATTGGAACCACCAGATGATTGAAACAAGAACCGGATTATAAACTTGCAAGATAAGAAATTAGGTAGAATATCCCAAAGTGGAACTTAAACATTTTCTCTCAAGCAAACTCAAGCTTCTATGACTATATATAAATTGTGTTTTCACCCCTCTCATTAACTCTGTTTACAACCACCTATCAGTAGCAAACTACTTAGCTAATGATACTAATACGTCCTTGGAATCCTAGTACTATTTCTTACTCCTGCCCTAATAGTATTCCTAACGGTTACTTGGGAAAAAATATTGTCAGGATTTAGTTATGGTTTATGAGTAATTATTATTATTATTATTTGTATATATTAATGAGTGTCTATTCTTACTATACAAATTGCTTGATCCTCTAACTTTTGGTCATGGATTTGAATTCCTCACCACACAAGCCCAACTGTCATTTGAAACTGCAACTCTTTAGTTTATCTTGAATCATCTTGTTTTAATGATTTTTCTTTAGCATTATCACATTTTAGTATGATTCAATGGCGTTGGCTTGTTCTCGCTCGTGTGTGGCTTTAACTCCTCTTTGTTCTTAAATCCAGGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGACCTGCACGACCAGGAACAAAGAGTTAG ATGTCGACACAATCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTCGTTGCTCCGGCAGTAAATCCTCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGATTGCCATCATATTTTGCGCCCAATCGCTTGCCAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGACCTGCACGACCAGGAACAAAGAGTTAG ATGTCGACACAATCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTCGTTGCTCCGGCAGTAAATCCTCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGATTGCCATCATATTTTGCGCCCAATCGCTTGCCAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGACCTGCACGACCAGGAACAAAGAGTTAG MSTQSNDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWIAIIFCAQSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS Homology
BLAST of Sed0010236 vs. NCBI nr
Match: XP_022933634.1 (protein Asterix-like [Cucurbita moschata] >XP_023007397.1 protein Asterix-like [Cucurbita maxima] >XP_023529496.1 protein Asterix-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Sed0010236 vs. NCBI nr
Match: KAG6587575.1 (Protein Asterix, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Sed0010236 vs. NCBI nr
Match: XP_038880376.1 (protein Asterix [Benincasa hispida]) HSP 1 Score: 197.2 bits (500), Expect = 6.8e-47 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Sed0010236 vs. NCBI nr
Match: XP_008453260.1 (PREDICTED: protein Asterix [Cucumis melo]) HSP 1 Score: 193.4 bits (490), Expect = 9.8e-46 Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of Sed0010236 vs. NCBI nr
Match: XP_004138191.1 (protein Asterix [Cucumis sativus] >KGN63717.1 hypothetical protein Csa_014204 [Cucumis sativus]) HSP 1 Score: 191.4 bits (485), Expect = 3.7e-45 Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy Swiss-Prot
Match: Q9SD88 (Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.1e-39 Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy Swiss-Prot
Match: Q09993 (Protein Asterix OS=Caenorhabditis elegans OX=6239 GN=K10B2.4 PE=3 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04 Identity = 31/101 (30.69%), Postives = 50/101 (49.50%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A6J1KYK4 (protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111499903 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A6J1F0A5 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111440996 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A1S3BWL0 (protein Asterix OS=Cucumis melo OX=3656 GN=LOC103494034 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 4.7e-46 Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A0A0LSF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45 Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0
BLAST of Sed0010236 vs. ExPASy TrEMBL
Match: A0A6J1E5Z1 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45 Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 0
BLAST of Sed0010236 vs. TAIR 10
Match: AT5G07960.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). ) HSP 1 Score: 163.7 bits (413), Expect = 7.7e-41 Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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